Cla000989 (gene) Watermelon (97103) v1

NameCla000989
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr6 : 16405298 .. 16407932 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGATGTATTGGCAAAGAAACACGAATCCTTGATTACTGCAAAGGAAATCTTGGATTCTTTAAAGGACATGTTCGGGATACCTTCATGGACCTTACGGCATGAGGCACTTAAATACGTTTATAACAAGCATATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATACTGCTGAAGTAAACGGGGTCACCATTGATGAGGCCAGTCAAGTAAGTTTTATTTTGGAGTCTCTTCCAAAGAGCTTCATACCATTTTGGACCAATGTTGATCTGAATAAAATAGAATTTAACTTGACAACCCTTATGAATGAGCTCTAGCATTTCCAGAACCTTACCAAGTCTAAGGGGAAGGAAGTGGAGGCAAACGTTGTAAGCACTGACTTGTGATACCAAGTGTTGGGGTGCGACAATGAGATTGTGGCTATGCGTTGCAAAAGGAGAAGTAGCCGAGAATGAGAGCAAAAATTTTTGGGAAGTAAAATTTTGGCTAAGTGTTGGTCAAGACCATGCGTTGTTGATTGACTCACGAAGGGTTGTGAGCTGAAGTAGCTGCCGCATCGAAGGATAAGTGATTTTTGGCGGGGAAGAAATGTGCTTGAACCATGCGTTAAAGTCACTCTGCGTTGAGGACAGACATGCGTTGAAGTCGCTCCGCGTCGAAGACAGAGTGGTCTTGACGCGACGAAGATAGTGTTGTATGACTGAGATGTATGCGTCAAAAATAGGAGGTGTTGAGGACGACGCCATGCGTTGGGTGTGGCTTGTTGCTGAAGGCGTTGGAGGAGAAGTTTAACTTGAGCGCCTCGCGTCGAAGTGAGAACCCCGCACCAGCCTGCAGGTGAGGGGTAATTCGGCAACATAATCTTGGTGTTTGTGAAGGTTAAGTCGGTAGTATATATAGTTGAATTAATTAAATGTTTAATCATTTTTAAAACATTTTCGAGAGCTTAAGTCGGTTCCACATTTCAGACAAACTTCAGGAGAAGATTAAGGAAGGTGTTCTTGTAGATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGGAACTGAAGATTGATCTTTAGTCGCACAGACTGAACAGTGGTTGATATTTGGAGTAGAACGAATAGAGGAAGCTGAGTTTAGAGCTGGAATTTGGAGGTCGGTAAGTTAACATAATTCTTAACAAGTCTTATGAAGGATAGTAAATTTGAAATTGAAGTTAATCATGTGAATCTTTAGGTGAAAGCAGCGCTTACGGGATTGTTAAGCAATCTATAGCAGCATGACGTGATTTTGAAATAACTAAAGAACGAAGAAGAGTTAAGCCTTGGAATTTTGAGGTAAGTTGTGAAACTCAATTCTCTATAAGTTTGTAGAAGGGAAGAAGTTCTAAATCCATCTGAATTTATGACTTTTAATAGATAGAAATAAGAACAAGAGGAAAGAAAGAAATCACGGTTGCTGGGTGCTGCTAAGAATCAGGTATCAGTGCGCTGTTTAAGTATTGATAGTGAGAGGAGTGTCGCTGAGACGCAAAGGAGGCTTCCGTCTCACAAAACTCGCTAGATATCGCTGGGTGTCGCTACTAAGATAAGGTAACGCTAGTGTCGCTCAACCTAGTATCGCTAGTAACAGATTCTGTTGGGTAGTATTGCTAGAAATCTCACTTATGATGTTAGTTTGGAAAAAATGGGAGATTCAATGTTAAGTAACGCAAGGTGAAATGTTTATTGCAGGTCAGGAAGAGATAGGGAAGGCGTATAACCCATGCAAGGCCTAGGAAGAGTTGTGAGTGACTACTTTATTCTTCAATTGATTTTCATTAAAAATGTTCTTATGGAATATGATTTTGCGATGAACTGTTTAAAATGTAAAATGTTGATTGCATTTCTTACAAGGTATGTTATACGTTTTCTAAAGTTGATAGAAAGCATTTACTGTTATGAAAGGTTATTGAATAAAGATCTGCATGATTTTCTATGAAGGGTTTTCCATATGAACTATTCATGTAAACGGATTCTAAAATGTTTTAGAGGAGGCTCAGTGCTCAAGGACATGAGAAGGCACGTGAGTTTCCCCGGGACCCAGTACTGAAGGACATGGAGAAGGTACTCGGGCAACCCGTCATATTCCTATGCACAAAGAGGTTGATTTGGCTATTGCGTCGAGTTGCTCCGCATTAAGCTAGGGATGATTTCGACGTTGGGTGTGTTAAGCCTTGCTCCACCCCCAACTAAGGTTGTTTTCGACGTTGAGTGCGTTGAACCGTTGCTCCGCCTCAACTAAAGGAAAAGTTTTGAAAAATCAAACTGTTACTGTTTCACTTCTTTGGAAAACAGTCATATATGATTTGAAATTGGATTTATGAGATTGATGGATTTGTGGAAAGTATGCTTTAATTGAATAATATGTTAAATCCCTGTTTATCTGTTATATGTAACATGCCTGTTTTCAATAAATGTCCGTTCTACAAAGATTGGTTACTCACTGGACTGTTAGCTTATGTTTTTCAATGTTTTCTTTTTCTCCCCCCAGGTAGCAAGGACGTTCCCGGTGCTTAGCCTACTTCAGCTCACCCTGCCTAAGTCTCGAGTTTCAAAATTCAATCAAGTCTGA

mRNA sequence

ATGTCTGATGTATTGGCAAAGAAACACGAATCCTTGATTACTGCAAAGGAAATCTTGGATTCTTTAAAGGACATGTTCGGGATACCTTCATGGACCTTACGGCATGAGGCACTTAAATACGTTTATAACAAGCATATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATACTGCTGAAGTAAACGGGGTCACCATTGATGAGGCCAGTCAACATTTCCAGAACCTTACCAAGTCTAAGGGGAAGGAAGTGGAGGCAAACGTTGTAGCAAGGACGTTCCCGGTGCTTAGCCTACTTCAGCTCACCCTGCCTAAGTCTCGAGTTTCAAAATTCAATCAAGTCTGA

Coding sequence (CDS)

ATGTCTGATGTATTGGCAAAGAAACACGAATCCTTGATTACTGCAAAGGAAATCTTGGATTCTTTAAAGGACATGTTCGGGATACCTTCATGGACCTTACGGCATGAGGCACTTAAATACGTTTATAACAAGCATATGAAGGAGGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATACTGCTGAAGTAAACGGGGTCACCATTGATGAGGCCAGTCAACATTTCCAGAACCTTACCAAGTCTAAGGGGAAGGAAGTGGAGGCAAACGTTGTAGCAAGGACGTTCCCGGTGCTTAGCCTACTTCAGCTCACCCTGCCTAAGTCTCGAGTTTCAAAATTCAATCAAGTCTGA

Protein sequence

MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMMVHFNTAEVNGVTIDEASQHFQNLTKSKGKEVEANVVARTFPVLSLLQLTLPKSRVSKFNQV
BLAST of Cla000989 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-29
Identity = 73/131 (55.73%), Postives = 85/131 (64.89%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           M+DVLAKKH+S+ TAK I+DSL++MFG PSW+LRHEA+K++Y K MKEGTSVREHVLDMM
Sbjct: 77  MTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMM 136

Query: 61  VHFNTAEVNGVTIDEASQ------------------------------------HFQNLT 96
           +HFN AEVNG  IDEA+Q                                     FQNLT
Sbjct: 137 MHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLT 196

BLAST of Cla000989 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-23
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           M+DVLAKK++S+ T K I+DS ++MFG PSW+LRHEA+K +Y K MKEGTSVREHVLDMM
Sbjct: 77  MTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTKRMKEGTSVREHVLDMM 136

Query: 61  VHFNTAEVNGVTIDEASQ 79
           +HFN A+V+G  IDEA+Q
Sbjct: 137 MHFNIAKVHGGPIDEANQ 154

BLAST of Cla000989 vs. TrEMBL
Match: A5AVN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1

Query: 5  LAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMMVHFN 64
          L  KHE L TA EI++SL+ MFG PS   RHEA+K V N  MK G+SVREHVL M+ HFN
Sbjct: 4  LGTKHEGLETASEIMESLQQMFGRPSEQARHEAVKAVMNSKMKNGSSVREHVLKMIHHFN 63

Query: 65 TAEVNGVTIDEASQ 79
           AE+NG  IDE +Q
Sbjct: 64 KAEINGAKIDEKTQ 77

BLAST of Cla000989 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           MSDVL KKHE + TA EI++SL+ MFG PS   R +A++   N  MK+G+SV+ HVL+M+
Sbjct: 77  MSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMNDKMKKGSSVKAHVLNMI 136

Query: 61  VHFNTAEVNGVTIDEASQ 79
            H + AE+NG  IDEA+Q
Sbjct: 137 DHLHDAELNGARIDEATQ 154

BLAST of Cla000989 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           MS  L +++E + TAK I+D LK +F   +W+LRHEA    Y K MKEGTSV EHVLDM 
Sbjct: 78  MSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYTKRMKEGTSVSEHVLDMA 137

Query: 61  VHFNTAEVNGVTIDEA---SQHFQNLTKS 87
           ++ + AEVNG  IDEA   S   Q+L KS
Sbjct: 138 MYSSRAEVNGGPIDEANAVSFILQSLPKS 166

BLAST of Cla000989 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 135.2 bits (339), Expect = 7.7e-29
Identity = 73/131 (55.73%), Postives = 85/131 (64.89%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           M+DVLAKKH+S+ TAK I+DSL++MFG PSW+LRHEA+K++Y K MKEGTSVREHVLDMM
Sbjct: 77  MTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMM 136

Query: 61  VHFNTAEVNGVTIDEASQ------------------------------------HFQNLT 96
           +HFN AEVNG  IDEA+Q                                     FQNLT
Sbjct: 137 MHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLT 196

BLAST of Cla000989 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           MSDVLAKKHESL TAKEI+DSL+ MFG P W+LRHEA+KY+Y K MKEGTSVREHVLDMM
Sbjct: 77  MSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTKRMKEGTSVREHVLDMM 136

Query: 61  VHFNTAEVNGVTIDEASQ 79
           +HFN A+VNG  I+E +Q
Sbjct: 137 MHFNIAQVNGGLIEEVNQ 154

BLAST of Cla000989 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-25
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           MSDVLAKKHESL TAKEI++SLK MFG P W+LRHE +KY+Y K MKEGTS++EHVLDMM
Sbjct: 77  MSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTKRMKEGTSIKEHVLDMM 136

Query: 61  VHFNTAEVNGVTIDEASQ 79
           +HFN  EVNG  IDEA+Q
Sbjct: 137 MHFNIFEVNGGAIDEANQ 154

BLAST of Cla000989 vs. NCBI nr
Match: gi|659090028|ref|XP_008445796.1| (PREDICTED: uncharacterized protein LOC103488720 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 8.8e-25
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           M DVL KKHESL TA EI+DSL++MFG   W+LRHEA+KY+  KHMKEGTSVR+H+LD+ 
Sbjct: 50  MYDVLVKKHESLATATEIMDSLREMFGKKEWSLRHEAIKYIRTKHMKEGTSVRKHILDIR 109

Query: 61  VHFNTAEVNGVTIDEASQHFQNLTKSKGKEVEANV 96
           +HFN AEVNG  I+EA+Q   +L +S   E+   V
Sbjct: 110 MHFNIAEVNGTAINEANQENSSLKRSSKSEITLKV 144

BLAST of Cla000989 vs. NCBI nr
Match: gi|299474489|gb|ADJ18450.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-23
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 1

Query: 1   MSDVLAKKHESLITAKEILDSLKDMFGIPSWTLRHEALKYVYNKHMKEGTSVREHVLDMM 60
           M+DVLAKK++S+ T K I+DS ++MFG PSW+LRHEA+K +Y K MKEGTSVREHVLDMM
Sbjct: 77  MTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTKRMKEGTSVREHVLDMM 136

Query: 61  VHFNTAEVNGVTIDEASQ 79
           +HFN A+V+G  IDEA+Q
Sbjct: 137 MHFNIAKVHGGPIDEANQ 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E2GK51_BRYDI5.3e-2955.73Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI5.7e-2367.95Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A5AVN4_VITVI2.0e-1560.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1[more]
W9SH28_9ROSA1.4e-1353.85Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
A0A165U314_9ROSI2.4e-1352.81Gag/pol protein OS=Momordica dioica PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|7.7e-2955.73gag/pol protein [Bryonia dioica][more]
gi|778697615|ref|XP_011654359.1|4.6e-2675.64PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659086056|ref|XP_008443743.1|1.0e-2574.36PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
gi|659090028|ref|XP_008445796.1|8.8e-2560.00PREDICTED: uncharacterized protein LOC103488720 [Cucumis melo][more]
gi|299474489|gb|ADJ18450.1|8.2e-2367.95gag/pol protein [Bryonia dioica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000989Cla000989.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 7..78
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None