Cla000960 (gene) Watermelon (97103) v1

Overview
NameCla000960
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 14652485 .. 14653141 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGGAGGCAATTTTGTGAAAGTACCCAAGTCATCCAACCCATCGTCGTGGAGGCATTCTACAAAGGAACCATCCACATACAAGCACACAAAGTCAAAGTTGATGATGTGGTGATTTCCTTCAAGCCTTGGGAGATTAATGGGTTGTTTGATCTTCCCGACGTTGCTGCGGTAGATGGTAATAGAATCATGTCGACGCCAACAAAAGTCAAAATGCATGATGCCCTCAAGACTATCGCCAGACCGGGGTCAAAATGTAACACTTCCCCAAAGGGTATTCATATATTGACGCCAACTTGCTTGATCTCTGAGGCTAACCTGTGGCTTTACTTCATCAAGCGTTTGCTCCTCCCCAACATGTATGACGCCTCAATATCAAGGGACCGTGCCATGGTCATCTATTGCATCATGCGAGGGATTTGGCTAGATGTGGGATGCATCATTGCCCCACAAATTTGGGGGGTGTTTTTCAAGCCCAGGGGTCAATTGTTTTTCCCCTTTCTTGTGACACGACTGTGCGCCAACGCGGAATGGATGGAGGATGCGCTAGTCAGAGCAATAAATGGAGTCCTTTTAGCCCAAAGTCTGAGAAGGATATTGAAGGACTCCCCGCATCTACTTGAGGCGGCCAAGATAAAGAAGCGACCTGCCTAG

mRNA sequence

ATGGGTTGGAGGCAATTTTGTGAAAGTACCCAAGTCATCCAACCCATCGTCGTGGAGGCATTCTACAAAGGAACCATCCACATACAAGCACACAAAGTCAAAGTTGATGATGTGGTGATTTCCTTCAAGCCTTGGGAGATTAATGGGTTGTTTGATCTTCCCGACGTTGCTGCGGTAGATGGTAATAGAATCATGTCGACGCCAACAAAAGTCAAAATGCATGATGCCCTCAAGACTATCGCCAGACCGGGGTCAAAATGTAACACTTCCCCAAAGGGTATTCATATATTGACGCCAACTTGCTTGATCTCTGAGGCTAACCTGTGGCTTTACTTCATCAAGCGTTTGCTCCTCCCCAACATGTATGACGCCTCAATATCAAGGGACCGTGCCATGGTCATCTATTGCATCATGCGAGGGATTTGGCTAGATGTGGGATGCATCATTGCCCCACAAATTTGGGGGGTGTTTTTCAAGCCCAGGGGTCAATTGTTTTTCCCCTTTCTTGTGACACGACTGTGCGCCAACGCGGAATGGATGGAGGATGCGCTAGTCAGAGCAATAAATGGAGTCCTTTTAGCCCAAAGTCTGAGAAGGATATTGAAGGACTCCCCGCATCTACTTGAGGCGGCCAAGATAAAGAAGCGACCTGCCTAG

Coding sequence (CDS)

ATGGGTTGGAGGCAATTTTGTGAAAGTACCCAAGTCATCCAACCCATCGTCGTGGAGGCATTCTACAAAGGAACCATCCACATACAAGCACACAAAGTCAAAGTTGATGATGTGGTGATTTCCTTCAAGCCTTGGGAGATTAATGGGTTGTTTGATCTTCCCGACGTTGCTGCGGTAGATGGTAATAGAATCATGTCGACGCCAACAAAAGTCAAAATGCATGATGCCCTCAAGACTATCGCCAGACCGGGGTCAAAATGTAACACTTCCCCAAAGGGTATTCATATATTGACGCCAACTTGCTTGATCTCTGAGGCTAACCTGTGGCTTTACTTCATCAAGCGTTTGCTCCTCCCCAACATGTATGACGCCTCAATATCAAGGGACCGTGCCATGGTCATCTATTGCATCATGCGAGGGATTTGGCTAGATGTGGGATGCATCATTGCCCCACAAATTTGGGGGGTGTTTTTCAAGCCCAGGGGTCAATTGTTTTTCCCCTTTCTTGTGACACGACTGTGCGCCAACGCGGAATGGATGGAGGATGCGCTAGTCAGAGCAATAAATGGAGTCCTTTTAGCCCAAAGTCTGAGAAGGATATTGAAGGACTCCCCGCATCTACTTGAGGCGGCCAAGATAAAGAAGCGACCTGCCTAG

Protein sequence

MGWRQFCESTQVIQPIVVEAFYKGTIHIQAHKVKVDDVVISFKPWEINGLFDLPDVAAVDGNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLLPNMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGVFFKPRGQLFFPFLVTRLCANAEWMEDALVRAINGVLLAQSLRRILKDSPHLLEAAKIKKRPA
Homology
[Close]
BLAST of Cla000960 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 59/205 (28.78%), Postives = 100/205 (48.78%), Query Frame = 1 

Query: 2   GWRQFCES-TQVIQPIVVEAFYKGTIHIQAHKVKVDDVVISFKPWEINGLFDLPDVA--A 61
           GWRQFC+  +  I P+V E FY   +      V V +V + F    IN +F L +V    
Sbjct: 15  GWRQFCQHPSNPIVPLVRE-FYANLLDFNQETVFVQNVKVPFTARAINSIFGLEEVVDEY 74

Query: 62  VDGNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLL 121
           VD     S  T  ++   L  +A  G+    SP+G +      L   A +W +F+    +
Sbjct: 75  VD---FASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFM 134

Query: 122 PNMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGV-FFKPRGQLFFPFLVTRLC--A 181
           P+ +  ++++DR +++Y I+ GI +++  I   +I      + RG L+FP L+T+L   A
Sbjct: 135 PSTHGKTVAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKA 194

Query: 182 NAEWMEDALVRAINGVLLAQSLRRI 201
           N  + +D  +    G +   S+ RI
Sbjct: 195 NVPYHKDEAIVHNAGAISTLSISRI 215

[Close]
BLAST of Cla000960 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.1e-11
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 1 

Query: 2   GWRQFCESTQVIQPIV--VEAFYKGTIHIQAHKVKVDDVVISFKPWEINGLFDLPDVAAV 61
           GW+ FC     I PIV  V+ FY    +   + V V ++ I+F    ING+  +P+    
Sbjct: 87  GWQIFCRHP--IDPIVPLVKEFYANLQNQGQNTVFVWEIDITFTSNYINGVLGIPNQDD- 146

Query: 62  DGNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLLP 121
           +   +++   + ++ + LKTIA  G++   S KG +      L   A +W +F+   LL 
Sbjct: 147 EFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLL 206

Query: 122 NMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGVFFKPRGQLFFPFLVTRLC 175
           + +  +ISR+RA+++Y ++ G  ++VG +I  QI     K +G L+FP L++ LC
Sbjct: 207 STHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]
BLAST of Cla000960 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 61  GNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLLPN 120
           G+ I+  P    +  ALK +  P +  + +P G + L P  L +EA +WL F+K+ ++P 
Sbjct: 6   GHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPT 65

Query: 121 MYDASISRDRAMVIYCIMRGIWLDV 146
            +D +IS +R M++YCIM+ I ++V
Sbjct: 66  RHDNNISMERVMLVYCIMKEILVEV 90

[Close]
BLAST of Cla000960 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 108 LWLYFIKRLLLPNMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGVFFKPRGQLFFP 167
           +WL  IK+ ++P  + ++IS +R M++YCIM+ I +++G II+  I  +   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 168 FLVTRLCANAEWMEDAL--VRAINGVLLAQSLRRIL 202
           +L+ +LC  A  M + L  V   +G+ L  +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]
BLAST of Cla000960 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-12
Identity = 59/205 (28.78%), Postives = 100/205 (48.78%), Query Frame = 1 

Query: 2   GWRQFCES-TQVIQPIVVEAFYKGTIHIQAHKVKVDDVVISFKPWEINGLFDLPDVA--A 61
           GWRQFC+  +  I P+V E FY   +      V V +V + F    IN +F L +V    
Sbjct: 15  GWRQFCQHPSNPIVPLVRE-FYANLLDFNQETVFVQNVKVPFTARAINSIFGLEEVVDEY 74

Query: 62  VDGNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLL 121
           VD     S  T  ++   L  +A  G+    SP+G +      L   A +W +F+    +
Sbjct: 75  VD---FASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFM 134

Query: 122 PNMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGV-FFKPRGQLFFPFLVTRLC--A 181
           P+ +  ++++DR +++Y I+ GI +++  I   +I      + RG L+FP L+T+L   A
Sbjct: 135 PSTHGKTVAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKA 194

Query: 182 NAEWMEDALVRAINGVLLAQSLRRI 201
           N  + +D  +    G +   S+ RI
Sbjct: 195 NVPYHKDEAIVHNAGAISTLSISRI 215

[Close]
BLAST of Cla000960 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 1 

Query: 2   GWRQFCESTQVIQPIV--VEAFYKGTIHIQAHKVKVDDVVISFKPWEINGLFDLPDVAAV 61
           GW+ FC     I PIV  V+ FY    +   + V V ++ I+F    ING+  +P+    
Sbjct: 87  GWQIFCRHP--IDPIVPLVKEFYANLQNQGQNTVFVWEIDITFTSNYINGVLGIPNQDD- 146

Query: 62  DGNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLLP 121
           +   +++   + ++ + LKTIA  G++   S KG +      L   A +W +F+   LL 
Sbjct: 147 EFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLL 206

Query: 122 NMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGVFFKPRGQLFFPFLVTRLC 175
           + +  +ISR+RA+++Y ++ G  ++VG +I  QI     K +G L+FP L++ LC
Sbjct: 207 STHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]
BLAST of Cla000960 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 61  GNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLLPN 120
           G+ I+  P    +  ALK +  P +  + +P G + L P  L +EA +WL F+K+ ++P 
Sbjct: 6   GHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPT 65

Query: 121 MYDASISRDRAMVIYCIMRGIWLDV 146
            +D +IS +R M++YCIM+ I ++V
Sbjct: 66  RHDNNISMERVMLVYCIMKEILVEV 90

[Close]
BLAST of Cla000960 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 108 LWLYFIKRLLLPNMYDASISRDRAMVIYCIMRGIWLDVGCIIAPQIWGVFFKPRGQLFFP 167
           +WL  IK+ ++P  + ++IS +R M++YCIM+ I +++G II+  I  +   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 168 FLVTRLCANAEWMEDAL--VRAINGVLLAQSLRRIL 202
           +L+ +LC  A  M + L  V   +G+ L  +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]
BLAST of Cla000960 vs. NCBI nr
Match: gi|848863901|ref|XP_012832708.1| (PREDICTED: uncharacterized protein LOC105953582 [Erythranthe guttata])

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 42/141 (29.79%), Postives = 64/141 (45.39%), Query Frame = 1 

Query: 2   GWRQFCESTQVIQPIVVEAFYKGTIHIQAH-KVKVDDVVISFKPWEINGLFDLPDVAAVD 61
           GW+ F E        +V  F+    H   +  VKV DVV+ F P  IN  F+LPD++   
Sbjct: 84  GWQSFIEDPGEANVSMVREFFANAAHSDNNTSVKVRDVVVRFDPAHINNYFNLPDLSLEG 143

Query: 62  GNRIMSTPTKVKMHDALKTIARPGSKCNTSPKGIHILTPTCLISEANLWLYFIKRLLLPN 121
            N +     K    D ++T+   G+      K  +    + L  EA  W YF+   LLP 
Sbjct: 144 YNTVKK---KTIFDDLIRTLCPRGTSWKEEKKSFN---RSELSKEAKAWAYFVSARLLPT 203

Query: 122 MYDASISRDRAMVIYCIMRGI 142
              +++   R ++IY I+ GI
Sbjct: 204 SAVSTVLPPRLLLIYAIIIGI 218

The following BLAST results are available for this feature:
BLAST of Cla000960 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QTD9_9ROSA6.3e-1228.78Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
W9RBS1_9ROSA4.1e-1130.86Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
A0A0A0L2P0_CUCSA1.2e-0735.29Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
A0A0A0LAN0_CUCSA1.6e-0735.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
BLAST of Cla000960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703087370|ref|XP_010093253.1|9.0e-1228.78hypothetical protein L484_022412 [Morus notabilis][more]
gi|703082781|ref|XP_010092041.1|5.8e-1130.86hypothetical protein L484_000844 [Morus notabilis][more]
gi|700199714|gb|KGN54872.1|1.8e-0735.29hypothetical protein Csa_4G569710 [Cucumis sativus][more]
gi|700202594|gb|KGN57727.1|2.3e-0735.42hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|848863901|ref|XP_012832708.1|3.9e-0729.79PREDICTED: uncharacterized protein LOC105953582 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000960Cla000960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000960Cucumber (Chinese Long) v3cucwmB049
Cla000960Watermelon (97103) v2wmwmbB250
Cla000960Wax gourdwgowmB510
Cla000960Cucumber (Chinese Long) v2cuwmB042
Cla000960Bottle gourd (USVL1VR-Ls)lsiwmB260
Cla000960Cucumber (Gy14) v2cgybwmB043