Cla000904 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000904
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	MMS19 nucleotide excision repair protein-like protein (AHRD V1 **-- E2A8P5_CAMFO)
Location	Chr0 : 21100613 .. 21103616 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAATGGACTAATGAGAATATATGTGATACTACAGGCCACAAGCTTGGAAGCAATCACCTCCCTTGCGAAGAACAATGATCTAACAATAGAAACTCTGGTATTTTCTGCCTAGCTTCTACTTCCCTTCCACTTTGTTCATGTTTCCTTTAACTCTATGCTGTTTGTTATACTGCCTTAAATTCTTATTTACATGATTTAGGTTAGAGAAATGGGGATGTATTTGACAATTACTGATAACATTATTCGAGGCAGAGGTACTTCTACATAAACTTCTGATTTGTTATATTTTTATTACCATTACGAGTTAATATTGTTATTACCATTACAAATTATTATTATCTGTACTTTCTGTATATTTTACTTGCTTGCTTTAACTTTTGAACAGTGTCTGTGGTTTGATGGTTGGCCATGAATCAGTCTGTACTTTGCAGCTGTGACTCTCCCTCTACGCTGAAAGACTCTAGTTGGCTAAAAGACAAAAGCGATTAAGGAAATTTTTATGTGACACATAACCTATTGGACTCACTAACCCTCACCCACCCCAAATTTTTGGTCCCTCAGAAATCCTCCTGTTTCTTTCTTTCCACATCTTTGGTAAAATAGGCAGTATAGCTATTATCTAGATAGACCTAGCTTTCATAAAATTTATTGCAAAGACTAGCTAAAACACAAGTTACTTTCAGATGTACTGCCTTATTGATGTTTATGGCTTAAAAAGCTGTGTCCGAGCGAACAAATTCTGAATGTTGTCATTGGTGCCTAACACTGAGTTGTCTATTAAATAACATGTCCCTATCTTTTGTTTGTTCTAGTGATGTTAGTTAACCATGTTACTGGGCCTTGCTGTTCACCTTAGTCTGTCGAGATATCTGTTATGCACACACCATCTTTTGTGGTTTGTATGTGCTGTGGGTAGTCAAAATTTTGACACGTTGCCTTGCATTTTCAATTTATTTTTCTGCATTTTTGAAAAAGAAACAACAAGCTTGCTATCCTTTTCAGGTATACTTCTTCTTGGGGAACTACTTGCATGTCTTGCATCAAAGCCTCTGGATGGTGCAACAATACACAGCCTCATTGCCTTCTTCACAGAGAGACTGGTGAGTATTCACTTTTAATTTCTTTTTCTCGACACCAATCACCTATCCAAACAGAGGGGCGATGGGTGTTCTCTATTGGTCTTTCTAGATTTTGATTTCCATTCTTTTTTGTTTTCATTTGTCTTTGTTCTATATGTTATTGCCTTTTCTTCTCTTTGTAACTGATTCCTTGTGTTGAAAATAATTCAAGGTTGCTTCCAACTTTGTACTGGGATATTAAATAAACATAGATGTTTCACTCTTTATAATTCTTGTACTATCTATTAGGTTGTAATGATTTTCTTTTAAACACGCACACCCCATATTGCAAGATTGGTCAAACACAAGTTTCATTCTTTATTCTTTTTTGTAAATTCTTTTACATTGTAGCGATTTTCTTTTGGAGTATGGGGCAACATGTTTTTGTTTGAGCTAATAATATGAAAGAAATGCTGGGCCTTTTCAAGAAAAGGAAAGATCTCCTGATGTTCTCATTGATCTTATTTGTTTCTTAGCTATGTCTCTACTTTGTCATACTTATAGTTTAAATTCTCTTATATCCGATTTGAGAAGTTTTCTTTGTTAGTTCATTGTATGGGTTTCTCTCATTTGTTTTTGGTTTTTGATAAAGTATCAAACTATCATAGTTAAAAAATGAAAGAATACAAGTAAAGTAACACTAAGAGGATAATTATTTTTGTAAAAAAGAACAATTTCTTTTGGGATTTGTATCCATTGAACATTTATTCTTTTTCATTATATGAATAATAATGTGTTTCTTGAAAAAAGAAAACCATTACGTAAGTCTACAAAGAAACATGGAATCTAACAAGAGACTAAACATTCCTTGATCTCTCCAACTCTCTAAAGATTCTTTTGAATACTTTTTGCTTTTCAGAAAAGTGCTAATATTTATTAGGATTGGAAATAAAAGTGCTTCTATTTTGTACCTGAGCACAAGCCTTTGAGGGAGGAACTGATTTTTATCATTTAGAAACATTTTTGTCAAAATTAAAAACACTCCCAAATACTTCATATTGTAGATTCATTTTAATACACCAGGATGCAAGTTTCTCTATTCAATGTGATAGATAACTTGATACTTACTATCAGGCAGATTGGAAAGCTTTACGAGGTGCCCTTGTTGGCTGCTTGGCACTGATGAGGAGGAAAACGAATGTTGGGACAATTTCTCAGAGTGATGCAAAGTCTGTTGCCCAGTCTTATTTTCAAAATCTTCAAGTACAGTCCTTGGGACAGCATGATCGAAAGGTGAGTTAACAAACTTATCATGTACATGTAGGGAACTTATGCAGATACTTGCTGGCAAATGTTTTCAAATTTTAATAAGGTTTCTGATATTCTTTTCTTCCGTTTCACTTTGATTTATTTATTTTGACAGCTGAGTTTTGAACTTCTGGTGTGCCTTTTGGAACATTATCCTGATGCAGTTGTTTCACTGGTACTATATTTTCTTGCTTTCTTCCAGCCTTTTAATCCGTGTCTTCTTTCAGGAGTCATGAAAACCACAAGAAGCGATTAAAAAATGTTCCCTTGACCCATTTGCTCAACCCCTTTTTGGGTTACATCACATCTTGATGTCTATATGACGCTTCTCATGTTTCACTGCTTGACCCTTTTTTTGGAGTCAGTATCAATGAATTCCTCACTGATGTCCAGGGTGATGATCTTGTGTATGGAATCTGTGAAGCCATCGATGGGGAAAAAGATCCACACTGCTTAATGCTTACTTTTCACATCGTTGAGCTTGTGGCAAAGCTATTCCCAGATCCAACTGGAACACTTGCAAGTAGTTCCAGCGATCTTTTTGAATTCCTGGGTTGCTATTTCCCAATCCATTTTACACATGTAAGTTCAATGCATCTTGTTTCATCATTTCCTTTCCTGATTTCTTGA

mRNA sequence

ATGAAGAACAATGGACTAATGAGAATATATGTGATACTACAGGCCACAAGCTTGGAAGCAATCACCTCCCTTGCGAAGAACAATGATCTAACAATAGAAACTCTGGTTAGAGAAATGGGGATGTATTTGACAATTACTGATAACATTATTCGAGGCAGAGGTATACTTCTTCTTGGGGAACTACTTGCATGTCTTGCATCAAAGCCTCTGGATGGTGCAACAATACACAGCCTCATTGCCTTCTTCACAGAGAGACTGGCAGATTGGAAAGCTTTACGAGGTGCCCTTGTTGGCTGCTTGGCACTGATGAGGAGGAAAACGAATGTTGGGACAATTTCTCAGAGTGATGCAAAGTCTGTTGCCCAGTCTTATTTTCAAAATCTTCAAGTACAGTCCTTGGGACAGCATGATCGAAAGCTGAGTTTTGAACTTCTGGTGTGCCTTTTGGAACATTATCCTGATGCAGTTGTTTCACTGGGTGATGATCTTGTGTATGGAATCTGTGAAGCCATCGATGGGGAAAAAGATCCACACTGCTTAATGCTTACTTTTCACATCGTTGAGCTTGTGGCAAAGCTATTCCCAGATCCAACTGGAACACTTGCAAGTAGTTCCAGCGATCTTTTTGAATTCCTGGGTTGCTATTTCCCAATCCATTTTACACATGTAAGTTCAATGCATCTTGTTTCATCATTTCCTTTCCTGATTTCTTGA

Coding sequence (CDS)

ATGAAGAACAATGGACTAATGAGAATATATGTGATACTACAGGCCACAAGCTTGGAAGCAATCACCTCCCTTGCGAAGAACAATGATCTAACAATAGAAACTCTGGTTAGAGAAATGGGGATGTATTTGACAATTACTGATAACATTATTCGAGGCAGAGGTATACTTCTTCTTGGGGAACTACTTGCATGTCTTGCATCAAAGCCTCTGGATGGTGCAACAATACACAGCCTCATTGCCTTCTTCACAGAGAGACTGGCAGATTGGAAAGCTTTACGAGGTGCCCTTGTTGGCTGCTTGGCACTGATGAGGAGGAAAACGAATGTTGGGACAATTTCTCAGAGTGATGCAAAGTCTGTTGCCCAGTCTTATTTTCAAAATCTTCAAGTACAGTCCTTGGGACAGCATGATCGAAAGCTGAGTTTTGAACTTCTGGTGTGCCTTTTGGAACATTATCCTGATGCAGTTGTTTCACTGGGTGATGATCTTGTGTATGGAATCTGTGAAGCCATCGATGGGGAAAAAGATCCACACTGCTTAATGCTTACTTTTCACATCGTTGAGCTTGTGGCAAAGCTATTCCCAGATCCAACTGGAACACTTGCAAGTAGTTCCAGCGATCTTTTTGAATTCCTGGGTTGCTATTTCCCAATCCATTTTACACATGTAAGTTCAATGCATCTTGTTTCATCATTTCCTTTCCTGATTTCTTGA

Protein sequence

MKNNGLMRIYVILQATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGATIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSLGQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKLFPDPTGTLASSSSDLFEFLGCYFPIHFTHVSSMHLVSSFPFLIS

Homology

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BLAST of Cla000904 vs. Swiss-Prot
Match: MMS19_ARATH (MMS19 nucleotide excision repair protein homolog OS=Arabidopsis thaliana GN=MMS19 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.2e-71
Identity = 124/209 (59.33%), Postives = 165/209 (78.95%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           Q  SL+AI S  +N+ L+I  LVREM MYLT TDN++R RGILLL E+L CL +KPL+  
Sbjct: 25  QDDSLKAIASSLENDSLSITQLVREMEMYLTTTDNLVRARGILLLAEILDCLKAKPLNDT 84

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
            +H+L+ FF+E+LADW+A+ GALVGCLAL++RK   G ++  D +++A+S  QN+QVQ+L
Sbjct: 85  IVHTLVGFFSEKLADWRAMCGALVGCLALLKRKDVAGVVTDIDVQAMAKSMIQNVQVQAL 144

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
             H+RKL+FELL CLL+ + +A++++GD LVY +CEAIDGEKDP CLM+ FH+VEL+A L
Sbjct: 145 ALHERKLAFELLECLLQQHSEAILTMGDLLVYAMCEAIDGEKDPQCLMIVFHLVELLAPL 204

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FP P+G LAS +SDLFE +GCYFP+HFTH
Sbjct: 205 FPSPSGPLASDASDLFEVIGCYFPLHFTH 233

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BLAST of Cla000904 vs. Swiss-Prot
Match: MMS19_DICDI (MMS19 nucleotide excision repair protein homolog OS=Dictyostelium discoideum GN=mms19 PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 4.8e-19
Identity = 59/208 (28.37%), Postives = 100/208 (48.08%), Query Frame = 1


Query: 13  LQATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDG 72
           ++  ++  +    K+N + ++ +V+ +G YL   D+I+R RG LLL E+L  L   PL+ 
Sbjct: 24  VKTNAINMVLLYMKSNKIDLQDVVQGLGDYLKSNDSILRARGTLLLSEVLCRLPDLPLNQ 83

Query: 73  ATIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQS 132
             +H L  F+ +RL D+      + G   L+   T        D + + ++ F  +   S
Sbjct: 84  DQVHFLAMFYCDRLQDYACSSEVVKGITGLITNHTP----DYPDNQKLLRNIFSEVHPTS 143

Query: 133 LGQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAK 192
           L Q  RK+  +++  +       +  L +D + G  + ID EKDP  L+ +F ++  V  
Sbjct: 144 LTQAHRKMVLQVIDIMFNKCLSEIQELKNDFMVGYLQFIDNEKDPRNLIFSFKLLPKVIY 203

Query: 193 LFPDPTGTLASSSSDLFEFLGCYFPIHF 221
             P+    L S    LFE + CYFPI F
Sbjct: 204 NIPEHKHFLES----LFEIISCYFPISF 223

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BLAST of Cla000904 vs. Swiss-Prot
Match: MMS19_BOVIN (MMS19 nucleotide excision repair protein homolog OS=Bos taurus GN=MMS19 PE=2 SV=3)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-18
Identity = 67/219 (30.59%), Postives = 108/219 (49.32%), Query Frame = 1


Query: 5   GLMRIYVILQATS-LEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLA 64
           GL++ +V+ Q     + + +  K+   T+  +V  +G  L   +   R RGI LL ++L 
Sbjct: 18  GLVQDFVMGQQEGPADQVAADVKSGSYTVLQVVEALGSSLENPEPRTRARGIQLLSQVLL 77

Query: 65  CLASKPLDGATIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQS 124
              S  L+   +H LI F+  RL D   +   +   L  +R  +   T+    A SV ++
Sbjct: 78  QCHSLLLEKEVVH-LILFYENRLKDHHLV---IPSVLQGLRALSLCVTLPPGLAVSVLKA 137

Query: 125 YFQNLQVQSLGQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLT 184
            FQ + VQSL Q DR   + ++   +    + +  LG D  +G  + +DGEKDP  L++ 
Sbjct: 138 IFQEVHVQSLPQVDRHTVYSIITNFMRAREEELKGLGADFTFGFIQVMDGEKDPRNLLVA 197

Query: 185 FHIV-ELVAKLFPDPTGTLASSSSDLFEFLGCYFPIHFT 222
           FHIV +L+++ +     +L     +LFE   CYFPI FT
Sbjct: 198 FHIVYDLISRDY-----SLGPFVEELFEVTSCYFPIDFT 227

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BLAST of Cla000904 vs. Swiss-Prot
Match: MMS19_XENTR (MMS19 nucleotide excision repair protein homolog OS=Xenopus tropicalis GN=mms19 PE=2 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-17
Identity = 69/220 (31.36%), Postives = 107/220 (48.64%), Query Frame = 1


Query: 5   GLMRIYVILQATSLEA-ITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLA 64
           GL+  +V+ +  S  A + +  K+   T+  +V  +G  L   +   R +G+ LL  +L 
Sbjct: 10  GLVEEFVVGEQDSRSAEVAAGVKDGIFTVLQVVEALGSCLANPEPRSRAKGMQLLSRVLL 69

Query: 65  CLASKPLDGATIHSLIAFFTERLADWKALRG-ALVGCLALMRRKTNVGTISQSDAKSVAQ 124
              S+ L    +  L+ F+  RL D   +    L G +AL    +    + Q  A SV +
Sbjct: 70  ECYSR-LTEKEVEVLVLFYENRLKDHHLITPHVLKGLMAL----SMCDVLPQGLAVSVLK 129

Query: 125 SYFQNLQVQSLGQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLML 184
           S FQ + VQSL Q DR   + ++   ++   + + SLG D  YG  + +DGEKDP  L++
Sbjct: 130 SVFQEVHVQSLMQIDRHTVYMIITNFMKTREEELKSLGADFTYGFIQVMDGEKDPRNLLV 189

Query: 185 TFHIV-ELVAKLFPDPTGTLASSSSDLFEFLGCYFPIHFT 222
            FHIV +++ K +      L     +LFE   CYFPI FT
Sbjct: 190 AFHIVQDIITKNY-----ALGPFVEELFEVTSCYFPIDFT 219

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BLAST of Cla000904 vs. Swiss-Prot
Match: MMS19_XENLA (MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis GN=mms19 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-17
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 1


Query: 5   GLMRIYVILQATSLEA-ITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLA 64
           GL+  +V+ +  S  A + +  K+   T+  +V  +G  L   +  +R +G+ LL  +L 
Sbjct: 10  GLVEEFVVGEQDSKSAEVAAGVKDGVFTVLQVVESLGSCLANPEPRMRSKGVQLLSRVLL 69

Query: 65  CLASKPLDGATIHSLIAFFTERLADWKALRG-ALVGCLALMRRKTNVGTISQSDAKSVAQ 124
              S+ L    +  L+ F+  RL D   +    L G +AL    +    + Q  A SV +
Sbjct: 70  ECYSR-LTEKEVEVLVVFYENRLKDHHLITPHVLQGLMAL----SMCDVLPQGVAVSVLK 129

Query: 125 SYFQNLQVQSLGQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLML 184
           S FQ + VQSL Q DR   + ++   ++   + + +LG D  YG  + +DGEKDP  L++
Sbjct: 130 SVFQEVHVQSLMQIDRHTVYMIITNFMKTREEELKNLGADFTYGFIQVMDGEKDPRNLLV 189

Query: 185 TFHIV-ELVAKLFPDPTGTLASSSSDLFEFLGCYFPIHFT 222
            F+IV ++V K +      L     +LFE   CYFPI FT
Sbjct: 190 AFYIVQDIVTKNY-----ALGPFVEELFEVTSCYFPIDFT 219

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BLAST of Cla000904 vs. TrEMBL
Match: A0A0A0K7A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452350 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.1e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QATSLE ITSL KNN LTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLD A
Sbjct: 24  QATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDSA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVG+ISQ+DAKSVAQSYFQNLQVQSL
Sbjct: 84  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGSISQNDAKSVAQSYFQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQHDRKLSFELL CLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCL+LTF IVELVAKL
Sbjct: 144 GQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLLLTFRIVELVAKL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDPTG LASSSSDLFEFLGCYFPIHFTH
Sbjct: 204 FPDPTGALASSSSDLFEFLGCYFPIHFTH 232

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BLAST of Cla000904 vs. TrEMBL
Match: A0A0D2RCE6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G230600 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.6e-85
Identity = 158/209 (75.60%), Postives = 180/209 (86.12%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QA SLEAI SL KNN LTIETLVREM  YLT  DNIIR RGILLLGE+L  LASKPL  A
Sbjct: 24  QAASLEAIASLLKNNQLTIETLVREMEGYLTTVDNIIRARGILLLGEVLVRLASKPLGDA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLI FFT+RLADW+ALRGALVGCLALMRRK++ G +S SDAK+VA+SY QNLQVQSL
Sbjct: 84  TIHSLIGFFTDRLADWRALRGALVGCLALMRRKSSGGMVSGSDAKAVAESYLQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQ +RKLSFEL+ CLLE YP+AV SLGD L+YGICE++DGEKDPHCLMLTFHI+E++++L
Sbjct: 144 GQFERKLSFELMECLLERYPNAVASLGDTLIYGICESVDGEKDPHCLMLTFHIIEVLSRL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDP+  LA  + +LFE LGCYFPIHFTH
Sbjct: 204 FPDPSDALAGFAHELFEILGCYFPIHFTH 232

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BLAST of Cla000904 vs. TrEMBL
Match: A0A0B0MQY6_GOSAR (MMS19 nucleotide excision repair OS=Gossypium arboreum GN=F383_28568 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 6.0e-85
Identity = 157/209 (75.12%), Postives = 181/209 (86.60%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QA SLEAI SL KNN LTIETLVREM  YLT  DNIIR RGILLLGE+L  LA+KPLD A
Sbjct: 24  QAASLEAIASLLKNNQLTIETLVREMEGYLTTVDNIIRARGILLLGEVLVRLATKPLDDA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TI SLI FFT+RLADW+ALRGALVGCLALMRRK++ G +S SDAK+VA+SY QNLQVQSL
Sbjct: 84  TIRSLIGFFTDRLADWRALRGALVGCLALMRRKSSGGMVSGSDAKAVAESYLQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQ++RKLSFEL+ CLLE YP+AV SLGD L+YGICE++DGEKDPHCLMLTFHI+E++++L
Sbjct: 144 GQYERKLSFELMECLLERYPNAVASLGDTLIYGICESVDGEKDPHCLMLTFHIIEVLSRL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDP+  LA  + +LFE LGCYFPIHFTH
Sbjct: 204 FPDPSDALAGFAHELFEILGCYFPIHFTH 232

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BLAST of Cla000904 vs. TrEMBL
Match: V4SSJ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024743mg PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 160/209 (76.56%), Postives = 180/209 (86.12%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QA SL+ I SL K N LTIETLVREMGMYLT TD++IR RGILLLGELL  LASKPLD A
Sbjct: 24  QAASLDVIASLLKKNVLTIETLVREMGMYLTTTDDVIRARGILLLGELLTHLASKPLDDA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHS++AFFT+RLADWKALRGALVGCLAL+RRK++ G I+ +DAK+VAQSY QNLQVQSL
Sbjct: 84  TIHSMLAFFTDRLADWKALRGALVGCLALLRRKSSGGVITTNDAKAVAQSYIQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
            QHDRKL FELL CLL+ YPDAVVSLG+DL+Y ICEA+DGEKDPHCLMLTFHIVE+ A+L
Sbjct: 144 AQHDRKLCFELLECLLQRYPDAVVSLGEDLLYAICEAVDGEKDPHCLMLTFHIVEVAAEL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           F D    LA+ + DLFE LGCYFPIHFTH
Sbjct: 204 FSD--DLLANFAGDLFEILGCYFPIHFTH 230

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BLAST of Cla000904 vs. TrEMBL
Match: A0A061GCP6_THECC (MMS19 nucleotide excision repair protein, putative isoform 1 OS=Theobroma cacao GN=TCM_028892 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-82
Identity = 152/209 (72.73%), Postives = 177/209 (84.69%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QA SL+ I SL KNN LTIETLVREM  YLT  DNIIR RGILLLGE+L  LASKPLD A
Sbjct: 24  QAASLDVIASLLKNNQLTIETLVREMEGYLTTADNIIRARGILLLGEVLMHLASKPLDDA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLI FFT+RLADW+ALRGALVGCLAL+RRK++ G +S++DAK+VA+SY QNLQVQSL
Sbjct: 84  TIHSLIQFFTDRLADWRALRGALVGCLALLRRKSSGGIVSETDAKAVAESYLQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           G++DRKL FELL+CLLE YP A+ SLGD+L+YGICEA+DGEKDPHCLML FHI+E++ +L
Sbjct: 144 GKYDRKLCFELLLCLLERYPKAIASLGDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDP G   S + DLFE L  YFP+HFTH
Sbjct: 204 FPDPLGPFTSFAHDLFENLSYYFPVHFTH 232

[Close]

BLAST of Cla000904 vs. TAIR10
Match: AT5G48120.1 (AT5G48120.1 ARM repeat superfamily protein)

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-72
Identity = 124/209 (59.33%), Postives = 165/209 (78.95%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           Q  SL+AI S  +N+ L+I  LVREM MYLT TDN++R RGILLL E+L CL +KPL+  
Sbjct: 25  QDDSLKAIASSLENDSLSITQLVREMEMYLTTTDNLVRARGILLLAEILDCLKAKPLNDT 84

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
            +H+L+ FF+E+LADW+A+ GALVGCLAL++RK   G ++  D +++A+S  QN+QVQ+L
Sbjct: 85  IVHTLVGFFSEKLADWRAMCGALVGCLALLKRKDVAGVVTDIDVQAMAKSMIQNVQVQAL 144

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
             H+RKL+FELL CLL+ + +A++++GD LVY +CEAIDGEKDP CLM+ FH+VEL+A L
Sbjct: 145 ALHERKLAFELLECLLQQHSEAILTMGDLLVYAMCEAIDGEKDPQCLMIVFHLVELLAPL 204

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FP P+G LAS +SDLFE +GCYFP+HFTH
Sbjct: 205 FPSPSGPLASDASDLFEVIGCYFPLHFTH 233

[Close]

BLAST of Cla000904 vs. NCBI nr
Match: gi|659124929|ref|XP_008462419.1| (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X4 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.2e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QATSLE ITSL KNN LTIETLVREMGMYLTITDNIIRGRGILLLGELLACL SKPLD A
Sbjct: 24  QATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLTSKPLDSA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQ+DAKSVAQSYFQNLQVQSL
Sbjct: 84  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQNDAKSVAQSYFQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQHDRKLSFELL CLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCL+LTF IVELVAKL
Sbjct: 144 GQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLLLTFRIVELVAKL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDP+GTLASSSSDLFEFLGCYFPIHFTH
Sbjct: 204 FPDPSGTLASSSSDLFEFLGCYFPIHFTH 232

[Close]

BLAST of Cla000904 vs. NCBI nr
Match: gi|659124925|ref|XP_008462417.1| (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.2e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QATSLE ITSL KNN LTIETLVREMGMYLTITDNIIRGRGILLLGELLACL SKPLD A
Sbjct: 24  QATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLTSKPLDSA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQ+DAKSVAQSYFQNLQVQSL
Sbjct: 84  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQNDAKSVAQSYFQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQHDRKLSFELL CLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCL+LTF IVELVAKL
Sbjct: 144 GQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLLLTFRIVELVAKL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDP+GTLASSSSDLFEFLGCYFPIHFTH
Sbjct: 204 FPDPSGTLASSSSDLFEFLGCYFPIHFTH 232

[Close]

BLAST of Cla000904 vs. NCBI nr
Match: gi|659124923|ref|XP_008462416.1| (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.2e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QATSLE ITSL KNN LTIETLVREMGMYLTITDNIIRGRGILLLGELLACL SKPLD A
Sbjct: 24  QATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLTSKPLDSA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQ+DAKSVAQSYFQNLQVQSL
Sbjct: 84  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQNDAKSVAQSYFQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQHDRKLSFELL CLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCL+LTF IVELVAKL
Sbjct: 144 GQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLLLTFRIVELVAKL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDP+GTLASSSSDLFEFLGCYFPIHFTH
Sbjct: 204 FPDPSGTLASSSSDLFEFLGCYFPIHFTH 232

[Close]

BLAST of Cla000904 vs. NCBI nr
Match: gi|449448060|ref|XP_004141784.1| (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QATSLE ITSL KNN LTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLD A
Sbjct: 24  QATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDSA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVG+ISQ+DAKSVAQSYFQNLQVQSL
Sbjct: 84  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGSISQNDAKSVAQSYFQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQHDRKLSFELL CLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCL+LTF IVELVAKL
Sbjct: 144 GQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLLLTFRIVELVAKL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDPTG LASSSSDLFEFLGCYFPIHFTH
Sbjct: 204 FPDPTGALASSSSDLFEFLGCYFPIHFTH 232

[Close]

BLAST of Cla000904 vs. NCBI nr
Match: gi|778729960|ref|XP_011659673.1| (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 1


Query: 14  QATSLEAITSLAKNNDLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDGA 73
           QATSLE ITSL KNN LTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLD A
Sbjct: 24  QATSLETITSLVKNNVLTIETLVREMGMYLTITDNIIRGRGILLLGELLACLASKPLDSA 83

Query: 74  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGTISQSDAKSVAQSYFQNLQVQSL 133
           TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVG+ISQ+DAKSVAQSYFQNLQVQSL
Sbjct: 84  TIHSLIAFFTERLADWKALRGALVGCLALMRRKTNVGSISQNDAKSVAQSYFQNLQVQSL 143

Query: 134 GQHDRKLSFELLVCLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLMLTFHIVELVAKL 193
           GQHDRKLSFELL CLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCL+LTF IVELVAKL
Sbjct: 144 GQHDRKLSFELLACLLEHYPDAVVSLGDDLVYGICEAIDGEKDPHCLLLTFRIVELVAKL 203

Query: 194 FPDPTGTLASSSSDLFEFLGCYFPIHFTH 223
           FPDPTG LASSSSDLFEFLGCYFPIHFTH
Sbjct: 204 FPDPTGALASSSSDLFEFLGCYFPIHFTH 232

The following BLAST results are available for this feature:

BLAST of Cla000904 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MMS19_ARATH	4.2e-71	59.33	MMS19 nucleotide excision repair protein homolog OS=Arabidopsis thaliana GN=MMS1...	[more]
MMS19_DICDI	4.8e-19	28.37	MMS19 nucleotide excision repair protein homolog OS=Dictyostelium discoideum GN=...	[more]
MMS19_BOVIN	9.1e-18	30.59	MMS19 nucleotide excision repair protein homolog OS=Bos taurus GN=MMS19 PE=2 SV=...	[more]
MMS19_XENTR	1.6e-17	31.36	MMS19 nucleotide excision repair protein homolog OS=Xenopus tropicalis GN=mms19 ...	[more]
MMS19_XENLA	1.6e-17	30.91	MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis GN=mms19 PE=2...	[more]

BLAST of Cla000904 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7A1_CUCSA	1.1e-107	95.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452350 PE=4 SV=1	[more]
A0A0D2RCE6_GOSRA	4.6e-85	75.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G230600 PE=4 SV=1	[more]
A0A0B0MQY6_GOSAR	6.0e-85	75.12	MMS19 nucleotide excision repair OS=Gossypium arboreum GN=F383_28568 PE=4 SV=1	[more]
V4SSJ3_9ROSI	1.8e-84	76.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024743mg PE=4 SV=1	[more]
A0A061GCP6_THECC	2.8e-82	72.73	MMS19 nucleotide excision repair protein, putative isoform 1 OS=Theobroma cacao ...	[more]

BLAST of Cla000904 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48120.1	2.3e-72	59.33	ARM repeat superfamily protein	[more]

BLAST of Cla000904 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124929\|ref\|XP_008462419.1\|	1.2e-107	95.22	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X4 [Cucumis ...	[more]
gi\|659124925\|ref\|XP_008462417.1\|	1.2e-107	95.22	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis ...	[more]
gi\|659124923\|ref\|XP_008462416.1\|	1.2e-107	95.22	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis ...	[more]
gi\|449448060\|ref\|XP_004141784.1\|	1.6e-107	95.22	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis ...	[more]
gi\|778729960\|ref\|XP_011659673.1\|	1.6e-107	95.22	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000904	Cla000904.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 14..197 score: 4.5
None	No IPR available	PANTHER	PTHR12891	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	coord: 14..222 score: 1.8
None	No IPR available	PANTHER	PTHR12891:SF0	MMS19 NUCLEOTIDE EXCISION REPAIR PROTEIN HOMOLOG	coord: 14..222 score: 1.8
None	No IPR available	PFAM	PF14500	MMS19_N	coord: 36..223 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000904	ClCG09G000220	Watermelon (Charleston Gray)	wcgwmB006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000904	Melon (DHL92) v3.6.1	medwmB180
Cla000904	Melon (DHL92) v3.6.1	medwmB334
Cla000904	Silver-seed gourd	carwmB0742
Cla000904	Silver-seed gourd	carwmB1027
Cla000904	Cucumber (Chinese Long) v3	cucwmB191
Cla000904	Cucumber (Chinese Long) v3	cucwmB576
Cla000904	Watermelon (97103) v2	wmwmbB004
Cla000904	Watermelon (97103) v2	wmwmbB006
Cla000904	Wax gourd	wgowmB166
Cla000904	Wax gourd	wgowmB578
Cla000904	Watermelon (97103) v1	wmwmB003
Cla000904	Cucumber (Gy14) v1	cgywmB646
Cla000904	Cucurbita maxima (Rimu)	cmawmB218
Cla000904	Cucurbita maxima (Rimu)	cmawmB327
Cla000904	Cucurbita maxima (Rimu)	cmawmB847
Cla000904	Cucurbita moschata (Rifu)	cmowmB321
Cla000904	Cucurbita moschata (Rifu)	cmowmB836
Cla000904	Wild cucumber (PI 183967)	cpiwmB182
Cla000904	Wild cucumber (PI 183967)	cpiwmB569
Cla000904	Melon (DHL92) v3.5.1	mewmB183
Cla000904	Watermelon (Charleston Gray)	wcgwmB352
Cla000904	Cucumber (Chinese Long) v2	cuwmB179
Cla000904	Cucumber (Chinese Long) v2	cuwmB551
Cla000904	Cucurbita pepo (Zucchini)	cpewmB130
Cla000904	Cucurbita pepo (Zucchini)	cpewmB310
Cla000904	Bottle gourd (USVL1VR-Ls)	lsiwmB169
Cla000904	Bottle gourd (USVL1VR-Ls)	lsiwmB423
Cla000904	Cucumber (Gy14) v2	cgybwmB169
Cla000904	Cucumber (Gy14) v2	cgybwmB514