Cla000766 (gene) Watermelon (97103) v1

Overview
NameCla000766
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 18776826 .. 18777311 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAGCGAGAGGCGAGAGGAAGGCGAGTGGAGCGGGAGAGCGAGAGGCGAGAGGAAGGCGAGTGGAGCGGGAGAGTAAGAGGCGAGAGGAAGGCGAGTGGAGAGGGAGACTGATAGGCGAGATGATAGCGAGTGGAGAGGGAGAGCGAGAGGCTAGAGGAAAGCGAGACGCTAGGGAGACCGACGGGCGAGAGGAGAGCGAGACGCCGGAGACACCCAGAGGCGACAGAAGCTTCGATTGGAGAGGGAGACCGAGAGACGAGGACAGCGAGACGCAAGGGAGACCGAGAGGCTACCGGATGTCGACTGGAGAGAGAGACCGAAAGACGAAGACAGCGACACTCCGGCAATGGTGGTCTAAGACGAGCGTGAGGGAGGCTATCGACGTGAATTCGAAATAG

mRNA sequence

ATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAGCGAGAGGCGAGAGGAAGGCGAGTGGAGCGGGAGAGCGAGAGGCGAGAGGAAGGCGAGTGGAGCGGGAGAGTAAGAGGCGAGAGGAAGGCGAGTGGAGAGGGAGACTGATAGGCGAGATGATAGCGAGTGGAGAGGGAGAGCGAGAGGCTAGAGGAAAGCGAGACGCTAGGGAGACCGACGGGCGAGAGGAGAGCGAGACGCCGGAGACACCCAGAGGCGACAGAAGCTTCGATTGGAGAGGGAGACCGAGAGACGAGGACAGCGAGACGCAAGGGAGACCGAGAGGCTACCGGATGTCGACTGGAGAGAGAGACCGAAAGACGAAGACAGCGACACTCCGGCAATGGTGGTCTAAGACGAGCGTGAGGGAGGCTATCGACGTGAATTCGAAATAG

Coding sequence (CDS)

ATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAGCGAGAGGCGAGAGGAAGGCGAGTGGAGCGGGAGAGCGAGAGGCGAGAGGAAGGCGAGTGGAGCGGGAGAGTAAGAGGCGAGAGGAAGGCGAGTGGAGAGGGAGACTGATAGGCGAGATGATAGCGAGTGGAGAGGGAGAGCGAGAGGCTAGAGGAAAGCGAGACGCTAGGGAGACCGACGGGCGAGAGGAGAGCGAGACGCCGGAGACACCCAGAGGCGACAGAAGCTTCGATTGGAGAGGGAGACCGAGAGACGAGGACAGCGAGACGCAAGGGAGACCGAGAGGCTACCGGATGTCGACTGGAGAGAGAGACCGAAAGACGAAGACAGCGACACTCCGGCAATGGTGGTCTAAGACGAGCGTGAGGGAGGCTATCGACGTGAATTCGAAATAG

Protein sequence

MXXXXXXXXXXXXXXXXXXXXXXXXXXXGRARGERKASGAGEREARGRRVERESKRREEGEWRGRLIGEMIASGEGEREARGKRDARETDGREESETPETPRGDRSFDWRGRPRDEDSETQGRPRGYRMSTGERDRKTKTATLRQWWSKTSVREAIDVNSK
Homology
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BLAST of Cla000766 vs. NCBI nr
Match: gi|654289124|ref|WP_027804067.1| (ribonuclease E [Paraburkholderia dilworthii])

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 43/113 (38.05%), Postives = 55/113 (48.67%), Query Frame = 1 

Query: 29  GRARGERKASGAGEREARGRRVERESKRREEGEWRGRLIGEMIASGEGEREARGKRDARE 88
           G ARG+  A+  GE    GR+ ++ S+RREE E R    G  +  G   RE RG R+ARE
Sbjct: 626 GAARGD--AAARGEAANGGRQGQQPSQRREEREPRE---GREVREGREPREPRGNREARE 685

Query: 89  TDGREESETPETPRGDRSFDWRGRPRDEDSETQGRPRGYRMSTGERDRKTKTA 142
             GRE  E  E   G  + D   R  D     +  PRG R   GER  + + A
Sbjct: 686 --GREPREAREPREGRENRDRDNRGGDRAEAVESAPRGERQERGERRERGERA 731

The following BLAST results are available for this feature:
BLAST of Cla000766 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|654289124|ref|WP_027804067.1|4.2e-0638.05ribonuclease E [Paraburkholderia dilworthii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000766Cla000766.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 1..1
scor