Cla000732 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000732
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 14192338 .. 14192544 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGCCGATCTGGGGCTTGCCTAAGGTGTTGTCTCGTAATTTTTGCTGTAGTTTCTGCTTTGGCTGTTTGTGGACCGGCTTTGTATTGGAGATTCAAGAAGGCTTTCCAATTGGGAGATTTCAAAGCCTCCTGTCCTCCTTGCATCTGCGATTGTCCACCCCCATTATCCCTTTTGAAGATTTCTCCTGGTAAAACTCGTTAA

mRNA sequence

ATGTCACGCCGATCTGGGGCTTGCCTAAGGTGTTGTCTCGTAATTTTTGCTGTAGTTTCTGCTTTGGCTGTTTGTGGACCGGCTTTGTATTGGAGATTCAAGAAGGCTTTCCAATTGGGAGATTTCAAAGCCTCCTGTCCTCCTTGCATCTGCGATTGTCCACCCCCATTATCCCTTTTGAAGATTTCTCCTGGTAAAACTCGTTAA

Coding sequence (CDS)

ATGTCACGCCGATCTGGGGCTTGCCTAAGGTGTTGTCTCGTAATTTTTGCTGTAGTTTCTGCTTTGGCTGTTTGTGGACCGGCTTTGTATTGGAGATTCAAGAAGGCTTTCCAATTGGGAGATTTCAAAGCCTCCTGTCCTCCTTGCATCTGCGATTGTCCACCCCCATTATCCCTTTTGAAGATTTCTCCTGGTAAAACTCGTTAA

Protein sequence

MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLLKISPGKTR

Homology

[Close]

BLAST of Cla000732 vs. TrEMBL
Match: A0A0A0LG38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008730 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-29
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLV FAVVSALAVCGPALYWRFKKA QLGD KASCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVFFAVVSALAVCGPALYWRFKKALQLGDSKASCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KISPG
Sbjct: 61 KISPG 65

[Close]

BLAST of Cla000732 vs. TrEMBL
Match: W9SA01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016882 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-27
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKK   LG+ K SCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKGINLGNSKNSCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

[Close]

BLAST of Cla000732 vs. TrEMBL
Match: A0A061GJK9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037096 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-26
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRR+G CLR CLVIFAVVSAL VCGPALYWRFKK  +LGD K+SCPPCICDCPPPLSLL
Sbjct: 1  MSRRAGTCLRLCLVIFAVVSALGVCGPALYWRFKKTLRLGDSKSSCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

[Close]

BLAST of Cla000732 vs. TrEMBL
Match: A0A067KQZ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03999 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.3e-26
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKK       K SCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKTIGFSGSKISCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

[Close]

BLAST of Cla000732 vs. TrEMBL
Match: B9SBY9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0700860 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-25
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          M+RRSG+CLRCCLVIFAVVSAL VCGPALYWRFKK       K SCPPCICDCPPPLSLL
Sbjct: 1  MTRRSGSCLRCCLVIFAVVSALGVCGPALYWRFKKTIAFSSSKTSCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

[Close]

BLAST of Cla000732 vs. TAIR10
Match: AT4G30996.1 (AT4G30996.1 Protein of unknown function (DUF1068))

HSP 1 Score: 100.9 bits (250), Expect = 3.2e-22
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKAS--CPPCICDCPPPLS 60
          M RRSG C+R CLVIFAVVSAL VCGPALYW+F K F +G  +A+  CPPC+CDCPPPLS
Sbjct: 1  MPRRSGDCMR-CLVIFAVVSALVVCGPALYWKFNKGF-VGSTRANSLCPPCVCDCPPPLS 60

Query: 61 LLKISPG 66
          LL+I+PG
Sbjct: 61 LLQIAPG 65

[Close]

BLAST of Cla000732 vs. TAIR10
Match: AT2G24290.1 (AT2G24290.1 Protein of unknown function (DUF1068))

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKAS---CPPCICDCPPPL 60
          M+RRSG C+R CLVIF+VVSAL VCGPALYW+  K F +G  +++   CPPC+CD PPPL
Sbjct: 1  MARRSGNCMR-CLVIFSVVSALLVCGPALYWKLNKGF-VGSARSTNSICPPCVCDFPPPL 60

Query: 61 SLLKISPG 66
          SLL+I+PG
Sbjct: 61 SLLQIAPG 66

[Close]

BLAST of Cla000732 vs. NCBI nr
Match: gi|449443017|ref|XP_004139277.1| (PREDICTED: uncharacterized protein LOC101212944 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLV FAVVSALAVCGPALYWRFKKA QLGD KASCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVFFAVVSALAVCGPALYWRFKKALQLGDSKASCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KISPG
Sbjct: 61 KISPG 65

[Close]

BLAST of Cla000732 vs. NCBI nr
Match: gi|659070941|ref|XP_008457359.1| (PREDICTED: uncharacterized protein LOC103497063 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLV FAVVSALAVCGPALYWRFKKA QLGD KASCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVFFAVVSALAVCGPALYWRFKKALQLGDSKASCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KISPG
Sbjct: 61 KISPG 65

[Close]

BLAST of Cla000732 vs. NCBI nr
Match: gi|703125702|ref|XP_010103371.1| (hypothetical protein L484_016882 [Morus notabilis])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKK   LG+ K SCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKGINLGNSKNSCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

[Close]

BLAST of Cla000732 vs. NCBI nr
Match: gi|590572923|ref|XP_007011979.1| (Uncharacterized protein TCM_037096 [Theobroma cacao])

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRR+G CLR CLVIFAVVSAL VCGPALYWRFKK  +LGD K+SCPPCICDCPPPLSLL
Sbjct: 1  MSRRAGTCLRLCLVIFAVVSALGVCGPALYWRFKKTLRLGDSKSSCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

[Close]

BLAST of Cla000732 vs. NCBI nr
Match: gi|802592215|ref|XP_012071463.1| (PREDICTED: uncharacterized protein LOC105633478 [Jatropha curcas])

HSP 1 Score: 124.4 bits (311), Expect = 7.6e-26
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKAFQLGDFKASCPPCICDCPPPLSLL 60
          MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKK       K SCPPCICDCPPPLSLL
Sbjct: 1  MSRRSGACLRCCLVIFAVVSALAVCGPALYWRFKKTIGFSGSKISCPPCICDCPPPLSLL 60

Query: 61 KISPG 66
          KI+PG
Sbjct: 61 KIAPG 65

The following BLAST results are available for this feature:

BLAST of Cla000732 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG38_CUCSA	1.0e-29	95.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008730 PE=4 SV=1	[more]
W9SA01_9ROSA	1.6e-27	89.23	Uncharacterized protein OS=Morus notabilis GN=L484_016882 PE=4 SV=1	[more]
A0A061GJK9_THECC	4.1e-26	84.62	Uncharacterized protein OS=Theobroma cacao GN=TCM_037096 PE=4 SV=1	[more]
A0A067KQZ7_JATCU	5.3e-26	86.15	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03999 PE=4 SV=1	[more]
B9SBY9_RICCO	3.4e-25	81.54	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0700860 PE=4 SV=1	[more]

BLAST of Cla000732 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30996.1	3.2e-22	71.64	Protein of unknown function (DUF1068)	[more]
AT2G24290.1	1.5e-19	64.71	Protein of unknown function (DUF1068)	[more]

BLAST of Cla000732 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443017\|ref\|XP_004139277.1\|	1.5e-29	95.38	PREDICTED: uncharacterized protein LOC101212944 [Cucumis sativus]	[more]
gi\|659070941\|ref\|XP_008457359.1\|	1.5e-29	95.38	PREDICTED: uncharacterized protein LOC103497063 [Cucumis melo]	[more]
gi\|703125702\|ref\|XP_010103371.1\|	2.4e-27	89.23	hypothetical protein L484_016882 [Morus notabilis]	[more]
gi\|590572923\|ref\|XP_007011979.1\|	5.8e-26	84.62	Uncharacterized protein TCM_037096 [Theobroma cacao]	[more]
gi\|802592215\|ref\|XP_012071463.1\|	7.6e-26	86.15	PREDICTED: uncharacterized protein LOC105633478 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010471	DUF1068

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU69141	watermelon EST collection version 2.0	transcribed_cluster
WMU72243	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000732	Cla000732.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU69141	WMU69141	transcribed_cluster
WMU72243	WMU72243	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010471	Protein of unknown function DUF1068	PFAM	PF06364	DUF1068	coord: 7..65 score: 8.3
None	No IPR available	PANTHER	PTHR32254	FAMILY NOT NAMED	coord: 1..65 score: 1.5
None	No IPR available	PANTHER	PTHR32254:SF4	EXPRESSED PROTEIN	coord: 1..65 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000732	Watermelon (97103) v1	wmwmB000
Cla000732	Watermelon (97103) v1	wmwmB001
Cla000732	Watermelon (97103) v1	wmwmB002
Cla000732	Watermelon (97103) v1	wmwmB005