Cla000641 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000641
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 16349667 .. 16350128 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCTGAAGACCATGCGTTAGACTCCAATGAAGGGCGTACTAAGGAGTACGTGGTGGCCAATGAAACCAAAAGAAAAAGAAAAGACGAAGAAGAATTGACACCACTGATAAGGAAAAAGAAGAAGACATCGAAAGGGTCGGAAAAATCTGTCGAGCTTGCAAGTAAGGCTGCCAAGGATAAGAAGCTGGTTAAGGCAGAGCGAGCGAACAATCCTGAGTCCGCCATTGCCACAACATCATTTGATCACCTTGCAGAGAAAATGGCAAAGAAAAGGGAAAAGCTTAGAAAGGAGCTAAGGATCCTGCGTAAAGGAGCAGAGAGCATCATGAAAGCAGAAATCACAAAGAAAAGGCCTCGCAAGGAAAAAGAAGGAGCTTCGACGCATATGCCTCCTGATCCTCAAATTGACCAAGCTACACTAGAATTTGAAGAGGAAAGGGGAAGGAAGAGAGAATAG

mRNA sequence

ATGAGCCCTGAAGACCATGCGTTAGACTCCAATGAAGGGCGTACTAAGGAGTACGTGGTGGCCAATGAAACCAAAAGAAAAAGAAAAGACGAAGAAGAATTGACACCACTGATAAGGAAAAAGAAGAAGACATCGAAAGGGTCGGAAAAATCTGTCGAGCTTGCAAGTAAGGCTGCCAAGGATAAGAAGCTGGTTAAGGCAGAGCGAGCGAACAATCCTGAGTCCGCCATTGCCACAACATCATTTGATCACCTTGCAGAGAAAATGGCAAAGAAAAGGGAAAAGCTTAGAAAGGAGCTAAGGATCCTGCGTAAAGGAGCAGAGAGCATCATGAAAGCAGAAATCACAAAGAAAAGGCCTCGCAAGGAAAAAGAAGGAGCTTCGACGCATATGCCTCCTGATCCTCAAATTGACCAAGCTACACTAGAATTTGAAGAGGAAAGGGGAAGGAAGAGAGAATAG

Coding sequence (CDS)

ATGAGCCCTGAAGACCATGCGTTAGACTCCAATGAAGGGCGTACTAAGGAGTACGTGGTGGCCAATGAAACCAAAAGAAAAAGAAAAGACGAAGAAGAATTGACACCACTGATAAGGAAAAAGAAGAAGACATCGAAAGGGTCGGAAAAATCTGTCGAGCTTGCAAGTAAGGCTGCCAAGGATAAGAAGCTGGTTAAGGCAGAGCGAGCGAACAATCCTGAGTCCGCCATTGCCACAACATCATTTGATCACCTTGCAGAGAAAATGGCAAAGAAAAGGGAAAAGCTTAGAAAGGAGCTAAGGATCCTGCGTAAAGGAGCAGAGAGCATCATGAAAGCAGAAATCACAAAGAAAAGGCCTCGCAAGGAAAAAGAAGGAGCTTCGACGCATATGCCTCCTGATCCTCAAATTGACCAAGCTACACTAGAATTTGAAGAGGAAAGGGGAAGGAAGAGAGAATAG

Protein sequence

MSPEDHALDSNEGRTKEYVVANETKRKRKDEEELTPLIRKKKKTSKGSEKSVELASKAAKDKKLVKAERANNPESAIATTSFDHLAEKMAKKREKLRKELRILRKGAESIMKAEITKKRPRKEKEGASTHMPPDPQIDQATLEFEEERGRKRE

Homology

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BLAST of Cla000641 vs. Swiss-Prot
Match: NOP58_DICDI (Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 2   SPEDHALDSNEGRTKEYVVANETKRKRKDEEELTPLIR--KKKKTSKGSEKSVELASKAA 61
           S E+ +  S + + +E  VA E K+++K ++E TP+ +  KK+K  K  +K  +   +  
Sbjct: 473 SEEEKSKKSKKSKKEETPVAKEEKKEKKSKKEETPVAKEEKKEKEEKKEKKDKKEKKEEK 532

Query: 62  KDKKLVKAERANNPESAIAT-TSFDHLAEKMAKKREKLRKELRILRKGAESIMKAEITKK 121
           +DKK  K E+ +  E    T  + +   EK  KK EK  K+     K  +   K E  +K
Sbjct: 533 EDKKEEKKEKKDKKEKTEETPVAKEEKKEKKEKKEEKEEKK----DKKEKKEKKEEKEEK 592

Query: 122 RPRKEKEGAS 129
           + +KEK+ +S
Sbjct: 593 KEKKEKKSSS 598

HSP 2 Score: 32.3 bits (72), Expect = 5.5e+00
Identity = 24/86 (27.91%), Postives = 38/86 (44.19%), Query Frame = 1


Query: 14  RTKEYVVANETKRKRKDEEELTPLIRKKKKTSKGSEKSVELASKAAKDKKLVKAERANNP 73
           +T+E  VA E K+++K+++E      KK K  K  +K  +   K  K+KK    E     
Sbjct: 548 KTEETPVAKEEKKEKKEKKEEKE--EKKDKKEKKEKKEEKEEKKEKKEKKSSSKEDKKEK 607

Query: 74  ESAIATTSFDHLAEKMAKKREKLRKE 100
           E        +   +K + K +K RK+
Sbjct: 608 E--------EKKEKKSSSKEDKKRKD 623

The following BLAST results are available for this feature:

BLAST of Cla000641 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NOP58_DICDI	3.0e-06	30.00	Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000641	Cla000641.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 86..106 score: -coord: 137..153 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000641	Watermelon (97103) v1	wmwmB000
Cla000641	Watermelon (97103) v1	wmwmB001
Cla000641	Watermelon (97103) v1	wmwmB002