Cla000609 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000609
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Mitochondrial ribosomal protein L37 (AHRD V1 ***- Q1PDW9_ARATH); contains Interpro domain(s) IPR013870 Ribosomal protein L37, mitochondrial
Location	Chr0 : 5101972 .. 5102376 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAACATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCAGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA

mRNA sequence

ATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAACATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCAGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA

Coding sequence (CDS)

ATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAACATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCAGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA

Protein sequence

MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

Homology

[Close]

BLAST of Cla000609 vs. Swiss-Prot
Match: RM54_MOUSE (39S ribosomal protein L54, mitochondrial OS=Mus musculus GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-06
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1


Query: 37  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPVWLWHLLDKHP 96
           KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  ++  P
Sbjct: 42  KGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYPTWLFQ-VNLGP 101

Query: 97  PLSELRRKNVESLPYADLKRFVKLDTRARIKENNSI 131
           P  +L     ES  Y  L R   +    R+ +N  +
Sbjct: 102 P-KKLEELEPESREYWRLLRKQNIWRHNRLSKNKKL 135

[Close]

BLAST of Cla000609 vs. TrEMBL
Match: A0A0A0KYS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.5e-61
Identity = 120/131 (91.60%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 3   MSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 62
           MSQ+RLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 63  VGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRA 122
           VGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRKN ESLPYADLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 123 RIKENNSIKAK 134
           RIKENNSIKAK
Sbjct: 121 RIKENNSIKAK 131

[Close]

BLAST of Cla000609 vs. TrEMBL
Match: A0A0A0KP92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218850 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-48
Identity = 100/134 (74.63%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           + ++QI LFRRSI+VN+K LIQLTSVRTF AGGKSKKGSKGGAA DAPKASIL       
Sbjct: 3   LNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL------- 62

Query: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 120
             +GANIL EG DPK+MADSEY +WLWHLLDKH PLSELRR+NV++LPYAD K FVKLDT
Sbjct: 63  --IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDT 122

Query: 121 RARIKENNSIKAKN 135
           RARIKEN S +AKN
Sbjct: 123 RARIKENTSTEAKN 127

[Close]

BLAST of Cla000609 vs. TrEMBL
Match: A0A0V0HSD2_SOLCH (Putative 39S ribosomal protein L54, mitochondrial-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           M ++ IR  R    VN   +IQ+   RTFA GG  KKG KGGAA D PKAS +SKEVK++
Sbjct: 1   MALTYIRSLRN---VNFHEVIQIGGCRTFAVGGGKKKGGKGGAAGDGPKASTISKEVKAS 60

Query: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 120
           TVVGANILK+GADPK++ DSEYP WLWHLLDK P LSELRRKN+ESLPY DLKRFVKLDT
Sbjct: 61  TVVGANILKDGADPKVLPDSEYPDWLWHLLDKRPALSELRRKNLESLPYDDLKRFVKLDT 120

Query: 121 RARIKENNSIKAKN 135
           RARIKENNS++AKN
Sbjct: 121 RARIKENNSVRAKN 131

[Close]

BLAST of Cla000609 vs. TrEMBL
Match: F6I5L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00420 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           M M++I+  R  I+  T+  ++L   RTFA GGK+KKGSKGG A+DAPKAS LSKEVKST
Sbjct: 6   MTMNRIKSVRSIII--TREAVRLVGCRTFAVGGKAKKGSKGGGASDAPKASTLSKEVKST 65

Query: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 120
           T VGANILK+G DPK++ DSEYP WLWHLLDK P LSELRRK+VESLPY  LKRFVKLD 
Sbjct: 66  TTVGANILKDGTDPKVLPDSEYPDWLWHLLDKRPALSELRRKSVESLPYEALKRFVKLDN 125

Query: 121 RARIKENNSIKAKN 135
           RARIKENN++KAKN
Sbjct: 126 RARIKENNNLKAKN 137

[Close]

BLAST of Cla000609 vs. TrEMBL
Match: A0A059AGY6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02294 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 99/135 (73.33%), Postives = 111/135 (82.22%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGG-KSKKGSKGGAAADAPKASILSKEVKS 60
           M M+ +R  +   +VN K  I +   RTF+AGG K+KKGSKGGAA DA KAS LSKEVKS
Sbjct: 1   MAMNHLRSLKG--IVNVKEAIGIVGRRTFSAGGSKAKKGSKGGAAGDAAKASTLSKEVKS 60

Query: 61  TTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLD 120
           TTVVGANILK+GADPK++ DSEYP WL HL+DK PPLSELRRKNVE+LPY DLKRFVKLD
Sbjct: 61  TTVVGANILKDGADPKVLPDSEYPDWLCHLIDKKPPLSELRRKNVETLPYEDLKRFVKLD 120

Query: 121 TRARIKENNSIKAKN 135
            RARIKENNSIKAKN
Sbjct: 121 NRARIKENNSIKAKN 133

[Close]

BLAST of Cla000609 vs. TAIR10
Match: AT3G01740.1 (AT3G01740.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 174.1 bits (440), Expect = 5.8e-44
Identity = 91/133 (68.42%), Postives = 106/133 (79.70%), Query Frame = 1


Query: 3   MSQIRLFRRSIVVNTKHLIQLTSVRTFAAGG-KSKKGSKGGAAADAPKASILSKEVKSTT 62
           M++I L R S   ++K +++    RTFAA   K+KKG KGG A+DAPK S L+KE+KSTT
Sbjct: 1   MNRIGLIRGS---SSKDVVR----RTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTT 60

Query: 63  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTR 122
           VVGAN LK+G+DPKI+ DS+YP WLWHLLDK P LSELRRKNVE+LPY DLKRFVKLDTR
Sbjct: 61  VVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTR 120

Query: 123 ARIKENNSIKAKN 135
            +IKENNSIKAKN
Sbjct: 121 GKIKENNSIKAKN 126

[Close]

BLAST of Cla000609 vs. TAIR10
Match: AT5G14290.1 (AT5G14290.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-38
Identity = 84/133 (63.16%), Postives = 101/133 (75.94%), Query Frame = 1


Query: 3   MSQIRLFRRSIVVNTKHLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTT 62
           M+ IR+F  SI   +K +++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ 
Sbjct: 1   MNLIRMFGDSIS-RSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSM 60

Query: 63  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTR 122
           VV AN LK+G DPKI+ +S++P +LWHLLDK P LSELRRKNVE+L + DLKRFVKLDTR
Sbjct: 61  VVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTR 120

Query: 123 ARIKENNSIKAKN 135
           ARIKEN+SIKAKN
Sbjct: 121 ARIKENHSIKAKN 132

[Close]

BLAST of Cla000609 vs. NCBI nr
Match: gi|659083108|ref|XP_008442186.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-62
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           MG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKST
Sbjct: 28  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 87

Query: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 120
           TVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFVKLDT
Sbjct: 88  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 147

Query: 121 RARIKENNSIKAK 134
           RARIKENNSIKAK
Sbjct: 148 RARIKENNSIKAK 160

[Close]

BLAST of Cla000609 vs. NCBI nr
Match: gi|659083110|ref|XP_008442187.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-62
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           MG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 120
           TVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

Query: 121 RARIKENNSIKAK 134
           RARIKENNSIKAK
Sbjct: 121 RARIKENNSIKAK 133

[Close]

BLAST of Cla000609 vs. NCBI nr
Match: gi|778695065|ref|XP_004144674.2| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 6.4e-61
Identity = 120/131 (91.60%), Postives = 129/131 (98.47%), Query Frame = 1


Query: 3   MSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 62
           MSQ+RLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 63  VGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRA 122
           VGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRKN ESLPYADLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 123 RIKENNSIKAK 134
           RIKENNSIKAK
Sbjct: 121 RIKENNSIKAK 131

[Close]

BLAST of Cla000609 vs. NCBI nr
Match: gi|700195542|gb|KGN50719.1| (hypothetical protein Csa_5G218850 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 6.3e-48
Identity = 100/134 (74.63%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60
           + ++QI LFRRSI+VN+K LIQLTSVRTF AGGKSKKGSKGGAA DAPKASIL       
Sbjct: 3   LNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL------- 62

Query: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 120
             +GANIL EG DPK+MADSEY +WLWHLLDKH PLSELRR+NV++LPYAD K FVKLDT
Sbjct: 63  --IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDT 122

Query: 121 RARIKENNSIKAKN 135
           RARIKEN S +AKN
Sbjct: 123 RARIKENTSTEAKN 127

[Close]

BLAST of Cla000609 vs. NCBI nr
Match: gi|1009117870|ref|XP_015875550.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 195.7 bits (496), Expect = 5.3e-47
Identity = 104/135 (77.04%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 1   MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAA-GGKSKKGSKGGAAADAPKASILSKEVKS 60
           M M+  R  + +I    K  I L   RTFAA GGK+KKGSKGGAA DAPKASILSKEVKS
Sbjct: 1   MAMNHARTLKTTIT--GKKAIGLVFQRTFAAGGGKAKKGSKGGAAGDAPKASILSKEVKS 60

Query: 61  TTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLD 120
           TTVVGANILKEGADPKI+ADSEYP WL HLLDK PPLSELRRKN+E+LPY DLKRFVKLD
Sbjct: 61  TTVVGANILKEGADPKILADSEYPDWLGHLLDKRPPLSELRRKNIETLPYEDLKRFVKLD 120

Query: 121 TRARIKENNSIKAKN 135
            RARIKENNS+KAKN
Sbjct: 121 NRARIKENNSVKAKN 133

The following BLAST results are available for this feature:

BLAST of Cla000609 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM54_MOUSE	5.9e-06	37.50	39S ribosomal protein L54, mitochondrial OS=Mus musculus GN=Mrpl54 PE=1 SV=1	[more]

BLAST of Cla000609 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYS4_CUCSA	4.5e-61	91.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1	[more]
A0A0A0KP92_CUCSA	4.4e-48	74.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218850 PE=4 SV=1	[more]
A0A0V0HSD2_SOLCH	1.2e-45	70.90	Putative 39S ribosomal protein L54, mitochondrial-like OS=Solanum chacoense PE=4...	[more]
F6I5L7_VITVI	1.2e-45	70.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00420 PE=4 SV=...	[more]
A0A059AGY6_EUCGR	2.0e-45	73.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02294 PE=4 SV=1	[more]

BLAST of Cla000609 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01740.1	5.8e-44	68.42	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	1.6e-38	63.16	Mitochondrial ribosomal protein L37	[more]

BLAST of Cla000609 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083108\|ref\|XP_008442186.1\|	5.8e-62	91.73	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]	[more]
gi\|659083110\|ref\|XP_008442187.1\|	5.8e-62	91.73	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
gi\|778695065\|ref\|XP_004144674.2\|	6.4e-61	91.60	PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus]	[more]
gi\|700195542\|gb\|KGN50719.1\|	6.3e-48	74.63	hypothetical protein Csa_5G218850 [Cucumis sativus]	[more]
gi\|1009117870\|ref\|XP_015875550.1\|	5.3e-47	77.04	PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013870	Ribosomal_L37_mit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU39030	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU53428	watermelon EST collection version 2.0	transcribed_cluster
WMU58869	watermelon EST collection version 2.0	transcribed_cluster
WMU62066	watermelon EST collection version 2.0	transcribed_cluster
WMU76835	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000609	Cla000609.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU39030	WMU39030	transcribed_cluster
WMU76835	WMU76835	transcribed_cluster
WMU62066	WMU62066	transcribed_cluster
WMU58869	WMU58869	transcribed_cluster
WMU53428	WMU53428	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 54..92 score: 1.2
None	No IPR available	PANTHER	PTHR28595	FAMILY NOT NAMED	coord: 1..134 score: 7.5
None	No IPR available	PANTHER	PTHR28595:SF1	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 1..134 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000609	Watermelon (97103) v1	wmwmB000
Cla000609	Watermelon (97103) v1	wmwmB001