Cla000493 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000493
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr3 : 21600556 .. 21600954 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCAAGAAAGCTACGTACAAAGGTCCTGCTGCAAACGACACCTACATGGGACCCATCACCCGAAGTCGCTCAAAAAGGGTCATGCAAGAGAAGGAACAAAATTTTGCCATCGCGGAGAACATTTGGAGGCGATTGATAGAATCTCCTAAAGGGGCGATTGTCATCAAAGAAAATCCTTTGTTTGACAGCTCCATTATTACTCCTGACCGATCCAAGAAGGAATCACACCCTAATGTGATATCTGTCATGATGGCCGATGTAAGGGCAGAGGCAGCCATGGCGAAAATGGAGAGGAAAATAAATCTTTTAATGAAAGTTGTTGAGAAGCGAGACCACGAGATCGCTACCTTGAGAGATCAGATGCAGGCTCGAGAAACTGCTGAGTCGAGCTAA

mRNA sequence

ATGGCCTCCAAGAAAGCTACGTACAAAGGTCCTGCTGCAAACGACACCTACATGGGACCCATCACCCGAAGTCGCTCAAAAAGGGTCATGCAAGAGAAGGAACAAAATTTTGCCATCGCGGAGAACATTTGGAGGCGATTGATAGAATCTCCTAAAGGGGCGATTGTCATCAAAGAAAATCCTTTGTTTGACAGCTCCATTATTACTCCTGACCGATCCAAGAAGGAATCACACCCTAATGTGATATCTGTCATGATGGCCGATGTAAGGGCAGAGGCAGCCATGGCGAAAATGGAGAGGAAAATAAATCTTTTAATGAAAGTTGTTGAGAAGCGAGACCACGAGATCGCTACCTTGAGAGATCAGATGCAGGCTCGAGAAACTGCTGAGTCGAGCTAA

Coding sequence (CDS)

ATGGCCTCCAAGAAAGCTACGTACAAAGGTCCTGCTGCAAACGACACCTACATGGGACCCATCACCCGAAGTCGCTCAAAAAGGGTCATGCAAGAGAAGGAACAAAATTTTGCCATCGCGGAGAACATTTGGAGGCGATTGATAGAATCTCCTAAAGGGGCGATTGTCATCAAAGAAAATCCTTTGTTTGACAGCTCCATTATTACTCCTGACCGATCCAAGAAGGAATCACACCCTAATGTGATATCTGTCATGATGGCCGATGTAAGGGCAGAGGCAGCCATGGCGAAAATGGAGAGGAAAATAAATCTTTTAATGAAAGTTGTTGAGAAGCGAGACCACGAGATCGCTACCTTGAGAGATCAGATGCAGGCTCGAGAAACTGCTGAGTCGAGCTAA

Protein sequence

MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQNFAIAENIWRRLIESPKGAIVIKENPLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIATLRDQMQARETAESS

Homology

[Close]

BLAST of Cla000493 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.1e-31
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQN--FAIAENIWRRLIESPKGAIVIK 60
           MA+ KA  K   A+D+Y+G +T+S  KR MQE+EQ   F + +    +LIESPKG I+I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENPLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIAT 120
           +NPLF++S    + S K SH  V+SVMM DV AEA + +MERKIN LMKV+E+RDHEIA 
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120

Query: 121 LRDQMQARETAESS 133
           L+DQM+A ET ESS
Sbjct: 121 LKDQMKACETGESS 134

[Close]

BLAST of Cla000493 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-29
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQNFAIAENIWRRLIESPKGAIVIKEN 60
           MA +K   K    ND+Y G +T+S SKR +QE+EQ+  + +  W +LIESPKG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIATLR 120
           PLF++S    + S KESH  V+SV+MA V AE  M +MERKIN LMK V+ RDHEI  L 
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALE 120

Query: 121 DQMQARETAE 131
           DQM+A  TAE
Sbjct: 121 DQMKACVTAE 130

[Close]

BLAST of Cla000493 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 30  MQEKEQNFAIAENIWRRLIESPKGAIVIKENPLFDSSIITPDRSKKESHPNVISVMMADV 89
           MQE+EQ F + +    +LIES KG I+I++NPLF++S  T + S KESH  V+SVMM DV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  RAEAAMAKMERKINLLMKVVEKRDHEIATLRDQMQARETAESS 133
            AEA MA+ME+KIN LMKVVE+RDHEIA L+DQM+A E+AESS
Sbjct: 61  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESS 103

[Close]

BLAST of Cla000493 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQNFAIAENIWRRLIESPKGAIVIKEN 60
           MA  K   K    NDTY   I +S SKR  Q++EQN  +A+  W +L+ESPK  I+IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  PLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIATL 120
           PLF+ S    + S+KESH  V+S+MMADV  EA M +ME KIN LMKVVE+RD+ I  L
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla000493 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-19
Identity = 56/135 (41.48%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQ-NFAIAENIWRRLIESPKGAIVIKE 60
           M S+  T K  A +D    P TRS S+ +   ++   F +A+NIW ++ + PKG I+IKE
Sbjct: 1   MTSQGNTSK--ALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKE 60

Query: 61  NPLFDSSIITPDRSKKES-HPNVISVMMADV-RAEAAMAKMERKINLLMKVVEKRDHEIA 120
           NP  D      + S +E+  PN++SVM+ DV  +EA M ++E+K+N+LMK VE+RD +IA
Sbjct: 61  NPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIA 120

Query: 121 TLRDQMQARETAESS 133
           +L++ +++R+TAES+
Sbjct: 121 SLKNHIESRDTAEST 133

[Close]

BLAST of Cla000493 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQN--FAIAENIWRRLIESPKGAIVIK 60
           MA+ KA  K   A+D+Y+G +T+S  KR MQE+EQ   F + +    +LIESPKG I+I+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENPLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIAT 120
           +NPLF++S    + S K SH  V+SVMM DV AEA + +MERKIN LMKV+E+RDHEIA 
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120

Query: 121 LRDQMQARETAESS 133
           L+DQM+A ET ESS
Sbjct: 121 LKDQMKACETGESS 134

[Close]

BLAST of Cla000493 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 135.6 bits (340), Expect = 6.4e-29
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQNFAIAENIWRRLIESPKGAIVIKEN 60
           MA +K   K    ND+Y G +T+S SKR +QE+EQ+  + +  W +LIESPKG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIATLR 120
           PLF++S    + S KESH  V+SV+MA V AE  M +MERKIN LMK V+ RDHEI  L 
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALE 120

Query: 121 DQMQARETAE 131
           DQM+A  TAE
Sbjct: 121 DQMKACVTAE 130

[Close]

BLAST of Cla000493 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 30  MQEKEQNFAIAENIWRRLIESPKGAIVIKENPLFDSSIITPDRSKKESHPNVISVMMADV 89
           MQE+EQ F + +    +LIES KG I+I++NPLF++S  T + S KESH  V+SVMM DV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  RAEAAMAKMERKINLLMKVVEKRDHEIATLRDQMQARETAESS 133
            AEA MA+ME+KIN LMKVVE+RDHEIA L+DQM+A E+AESS
Sbjct: 61  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESS 103

[Close]

BLAST of Cla000493 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-24
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 1   MASKKATYKGPAANDTYMGPITRSRSKRVMQEKEQNFAIAENIWRRLIESPKGAIVIKEN 60
           MA  K   K    NDTY   I +S SKR  Q++EQN  +A+  W +L+ESPK  I+IKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  PLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMERKINLLMKVVEKRDHEIATL 120
           PLF+ S    + S+KESH  V+S+MMADV  EA M +ME KIN LMKVVE+RD+ I  L
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla000493 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-20
Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 41  ENIWRRLIESPKGAIVIKENPLFDSSIITPDRSKKESHPNVISVMMADVRAEAAMAKMER 100
           ++I ++L+ SPK  I IKENPL+D+      + KKE+HP+V+SVMM D+ AEAAM +MER
Sbjct: 2   QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEAHPDVMSVMMVDITAEAAMTEMER 61

Query: 101 KINLLMKVVEKRDHEIATLRDQMQARETAESS 133
           KINL+MKVV+++DH+I  LR+QMQ  ET +SS
Sbjct: 62  KINLVMKVVKEQDHKITALREQMQIHETTKSS 93

The following BLAST results are available for this feature:

BLAST of Cla000493 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCP6_CUCME	8.1e-31	55.22	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	4.5e-29	53.85	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	1.0e-25	62.14	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	2.5e-24	52.94	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	9.3e-19	41.48	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla000493 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136441\|gb\|ADN34247.1\|	1.2e-30	55.22	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	6.4e-29	53.85	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	1.5e-25	62.14	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	3.6e-24	52.94	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	3.2e-20	56.52	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000493	Cla000493.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000493	Silver-seed gourd	carwmB0532
Cla000493	Silver-seed gourd	carwmB0971
Cla000493	Cucumber (Chinese Long) v3	cucwmB021
Cla000493	Watermelon (97103) v2	wmwmbB128
Cla000493	Watermelon (97103) v2	wmwmbB129
Cla000493	Cucumber (Gy14) v1	cgywmB639
Cla000493	Cucurbita maxima (Rimu)	cmawmB054
Cla000493	Cucurbita maxima (Rimu)	cmawmB096
Cla000493	Cucurbita moschata (Rifu)	cmowmB046
Cla000493	Cucurbita moschata (Rifu)	cmowmB086
Cla000493	Watermelon (Charleston Gray)	wcgwmB228
Cla000493	Watermelon (Charleston Gray)	wcgwmB230
Cla000493	Cucumber (Chinese Long) v2	cuwmB016
Cla000493	Cucurbita pepo (Zucchini)	cpewmB008
Cla000493	Cucurbita pepo (Zucchini)	cpewmB353
Cla000493	Melon (DHL92) v3.6.1	medwmB260
Cla000493	Bottle gourd (USVL1VR-Ls)	lsiwmB393
Cla000493	Cucumber (Gy14) v2	cgybwmB018