Cla000468 (gene) Watermelon (97103) v1

Overview
NameCla000468
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 13670158 .. 13670397 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACGCAATCCAAGTATTGGCGAAACCCGGGGCTAAGTGGGATGTTGCACCCACAGGTATCAAAACGCTATCCGCTAGCAGCCTAAGACCAGAGGCAAACCTGGGGGTATACTTGGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAAACAGTATCAAGGGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCACCCTGAATATTGGACGCATAATCGCGGCGTAG

mRNA sequence

ATGGAGGACGCAATCCAAGTATTGGCGAAACCCGGGGCTAAGTGGGATGTTGCACCCACAGGTATCAAAACGCTATCCGCTAGCAGCCTAAGACCAGAGGCAAACCTGGGGGTATACTTGGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAAACAGTATCAAGGGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCACCCTGAATATTGGACGCATAATCGCGGCGTAG

Coding sequence (CDS)

ATGGAGGACGCAATCCAAGTATTGGCGAAACCCGGGGCTAAGTGGGATGTTGCACCCACAGGTATCAAAACGCTATCCGCTAGCAGCCTAAGACCAGAGGCAAACCTGGGGGTATACTTGGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAAACAGTATCAAGGGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCACCCTGAATATTGGACGCATAATCGCGGCGTAG

Protein sequence

MEDAIQVLAKPGAKWDVAPTGIKTLSASSLRPEANLGVYLVKKRLIPTTHDKTVSRDRVMAAYCIMRRITLNIGRIIAA
Homology
[Close]
BLAST of Cla000468 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 

Query: 1  MEDAIQVLAKPGAKWDVAPTGIKTLSASSLRPEANLGVYLVKKRLIPTTHDKTVSRDRVM 60
          +E A++ +  P    D+ PTG   L   +L  EA + +  VKK+++PT HD  +S +RVM
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AAYCIMRRITLNI 74
            YCIM+ I + +
Sbjct: 78 LVYCIMKEILVEV 90

[Close]
BLAST of Cla000468 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-06
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 

Query: 1  MEDAIQVLAKPGAKWDVAPTGIKTLSASSLRPEANLGVYLVKKRLIPTTHDKTVSRDRVM 60
          +E A++ +  P    D+ PTG   L   +L  EA + +  VKK+++PT HD  +S +RVM
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AAYCIMRRITLNI 74
            YCIM+ I + +
Sbjct: 78 LVYCIMKEILVEV 90

The following BLAST results are available for this feature:
BLAST of Cla000468 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P0_CUCSA2.4e-0636.99Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
BLAST of Cla000468 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199714|gb|KGN54872.1|3.5e-0636.99hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000468Cla000468.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla000468ClCG05G013100Watermelon (Charleston Gray)wcgwmB289
Cla000468MELO3C023733.2Melon (DHL92) v3.6.1medwmB448
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None