Cla000452 (gene) Watermelon (97103) v1

Overview
NameCla000452
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 4884203 .. 4884505 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAAGAACAGCGAGAACTCTGACCCACCTGTTGTAAATGCAGAAGCATCATCATCCTCTCCTCAATCTCTCAACCGATGTCTAACTCATGTGGAAACATCACTCGAAGAGCAGAATGCTCGGCTGCTGGATGTACAATCCAAGACGGTTGGTCTCATGGATTCAATGGCAGAAATTCAACCAGCTGTAGAACTCCTCACTCAAGAAAAAGGTAAGATGACTGCTCCCTCTGTCAAAGAACAAAACCACAACCCTTTGTGCATTCAAGAACAAACTAATCCACTGAACAAAAACACGTGA

mRNA sequence

ATGACCAAGAACAGCGAGAACTCTGACCCACCTGTTGTAAATGCAGAAGCATCATCATCCTCTCCTCAATCTCTCAACCGATGTCTAACTCATGTGGAAACATCACTCGAAGAGCAGAATGCTCGGCTGCTGGATGTACAATCCAAGACGGTTGGTCTCATGGATTCAATGGCAGAAATTCAACCAGCTGTAGAACTCCTCACTCAAGAAAAAGGTAAGATGACTGCTCCCTCTGTCAAAGAACAAAACCACAACCCTTTGTGCATTCAAGAACAAACTAATCCACTGAACAAAAACACGTGA

Coding sequence (CDS)

ATGACCAAGAACAGCGAGAACTCTGACCCACCTGTTGTAAATGCAGAAGCATCATCATCCTCTCCTCAATCTCTCAACCGATGTCTAACTCATGTGGAAACATCACTCGAAGAGCAGAATGCTCGGCTGCTGGATGTACAATCCAAGACGGTTGGTCTCATGGATTCAATGGCAGAAATTCAACCAGCTGTAGAACTCCTCACTCAAGAAAAAGGTAAGATGACTGCTCCCTCTGTCAAAGAACAAAACCACAACCCTTTGTGCATTCAAGAACAAACTAATCCACTGAACAAAAACACGTGA

Protein sequence

MTKNSENSDPPVVNAEASSSSPQSLNRCLTHVETSLEEQNARLLDVQSKTVGLMDSMAEIQPAVELLTQEKGKMTAPSVKEQNHNPLCIQEQTNPLNKNT
Homology
[Close]
BLAST of Cla000452 vs. TrEMBL
Match: A0A0A0KE02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G416830 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 1 

Query: 21 SPQSLNRCLTHVETSLEEQNARLLDVQSKTVGLMDSMAEIQPAVELLTQEKGKMTAPSVK 80
          SPQS N  L HVE  L+ +  RLLDVQSK VG++ S+AEIQ A+ELLTQ+KGK TA  V+
Sbjct: 8  SPQSFNWRLNHVEQPLKSKIHRLLDVQSKMVGILASVAEIQRAIELLTQDKGKSTAAPVQ 67

Query: 81 EQNHNPL 88
            N NPL
Sbjct: 68 APNSNPL 74

[Close]
BLAST of Cla000452 vs. NCBI nr
Match: gi|700192726|gb|KGN47930.1| (hypothetical protein Csa_6G416830 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 1 

Query: 21 SPQSLNRCLTHVETSLEEQNARLLDVQSKTVGLMDSMAEIQPAVELLTQEKGKMTAPSVK 80
          SPQS N  L HVE  L+ +  RLLDVQSK VG++ S+AEIQ A+ELLTQ+KGK TA  V+
Sbjct: 8  SPQSFNWRLNHVEQPLKSKIHRLLDVQSKMVGILASVAEIQRAIELLTQDKGKSTAAPVQ 67

Query: 81 EQNHNPL 88
            N NPL
Sbjct: 68 APNSNPL 74

The following BLAST results are available for this feature:
BLAST of Cla000452 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE02_CUCSA1.4e-1161.19Uncharacterized protein OS=Cucumis sativus GN=Csa_6G416830 PE=4 SV=1[more]
BLAST of Cla000452 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192726|gb|KGN47930.1|2.0e-1161.19hypothetical protein Csa_6G416830 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000452Cla000452.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000452Watermelon (97103) v1wmwmB000
Cla000452Watermelon (97103) v1wmwmB001