Cla000311 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000311
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Mitochondrial import inner membrane translocase (AHRD V1 **-- C1FD57_MICSR); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22
Location	Chr0 : 23389874 .. 23393393 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGTGTGACTCTGCTTCTTCCTGTTCCTTGTTTTGTTACAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCGAACGGCATCATACAGACAGAAGGATTTTGCCCCCGATTGAAAACCACCTCATTTCCGAAATTCAGTTCTTCAATGAACAAACACGATTTTATGGAATTTGGGTACCTAATTCTTTTGGTTTTCTTTGAAATTGTAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGGTAAGGTTTTACGACTGCCCCGCTGTTTCCTTCTCCTGATTGATAATTTGACCTATCATCAGGCTTTGCATTCCCTGGCTTTGTTAAGTTCATTTTACTTTTTTAATGCGAAATTAATTTTGTTGAAGAAATGAAATTATGAAAGAGGGATAGAAAAGCCAAGCTCTTGTGTCTGTCTTTATAATTTTTCTGTTTAAGGAAGAAAGGATAAATCTCTTCCAAGTAGCACAAAGAATACTAAGGTCGCAGTTAAAAATGGTGATTAAGTTTGCATCAAGGCCACAAAGATGAGAAAATCGAAAAGTTTTCATTGTTCATTCAATGATTAAGTGCCAAAAGAAGGCTCTTACATGCTGCAACCAAAGGATGGTCCTTATGTTTTTAGAACCAAGGACAGAATTATACAACTTACGGAAGAGATCATATTCAAGTAAGGTAGTCCAAATGAGGTTCCTTTTGGAGATCAAATCTGTTAGTTTGAGAACAGACCACTTATATCAAGAAAATTGAACTGTTTTTCAATTAACCTATGGTGGCTCCCTTGTTTTTGTTCCTCCTCATCAATCTTTGTAGGGAGAGTAAGGAGAAAAACCCTAAATGCAAACTCTTTATGCCTCCTGCAACTAGTATGAGGGCAGATCCTTTGAGGAGTAGGCATAGGACCTGATACCACATGTAGTAAAGAAGACAAAAAAAGAAGAGATTTGAAAAAATGAATGGAATATCACATTTATTAAAGAAGAATTATCTTATCCCAGTCATAAATGTAAACTCTGCCTCCTGCAACTAGTATAAGGCCAGACCCCTTGAGGAGTAGGCATAGGACCTGATACCACATGTATTAAATTAAAGAAGAGAAAAAAAGAATAGAATGTAAATATTAAGATTTGATTAAATGACTGGATAAGGTAATTCCACCCTAGAGAGTTCTAGTATGCTTTTTTAGATGTTTAGTGCTGTTTGGCGACCCAAAGAGTATAGCTCTATAGTGAAGGAGTTTCTTTTTCATTCACCCTTTCATCATAAAAGGTTGATTTCTTCAAAATGACACCAAGTTTTGTGTAGTTGTATGGAGCATTTTGGTCGAGAGTTCTTGGAAGAACGCTTAGTCATTGTGTTAGGTTTCATGTTTTCGGTATATAAGGACTTTTGTAATTACCCTGTAAGTCTTAATTTTTTAGATTCGAGCCCTTTTGTTTTAGACTTTTAGTTCAGCGCATTTTCCTAGGTTGTTTGAATTCCCCTTCTATTCTTTTCTTTCTTGTCAATGGAAGCATGGTTTCTCAAACATTGCAACTAGCTTACTAACCTACATTTCTTGGTTCCAATTATTTTATCAAACCAGCCAAATATCCTTTAGAGTTTGAACTTATTGGCTCTTAGAGAGAGAGTATGCAAGTTGGAATGTGCTTTCCAAACCCTTGGATCTCGGAGGCTTGGGAATGGGTAACATGAGGCTTTAGAATGGATCTCTTTTGGCAAAGTCCTTTGTAACGCCTCTATTTAGGCATTAGTCTCTTTAGAACTCAAGGACACAGTTGTACAACCTATAGAATAGATCTTGTTCAAGTGTGGTCGTATTTAGGCATTAGTCTCTAAAGGTTTTGTTTAATTATCCATTAATTCTTATTATTAGGGGTTGAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGGCTAGTTGTTTGGCTTTGGAGTAAATTGTTTTTTGTATGCACGTGGACATTTTGTTTTGTATTTCATTTCTTCACCATGAAAGCTTGGTTTCTCATAAGAACAAAATATTAAGATGGATGAACTAATTTTATGGAGGTCCATGAGAAATGTCAAAGGGCTTTACAATATTCGGTTGTTTTCTTTTAACATTGTATGGAGAGGATAAGGAGTTCTTTATAACAATCTAGTATCCAATTAGTATGTATGTATTTATTCTCTCTTTTTTTCCCTTTAGTATAATATATGTACTTATTCTTGCATCATATAATCGTGGGAAAAGAGTAAAGATTCCTATGTGGATAATCTTGTACACGGTTATAGTCCTTTGATGTACGTAGACTCTCTTTTATGTTTCTTGTAGCCGACAAATTTAAATTTGGTTCCATGTTTCATGTACTGACTTGTCCTTAGAATGTATTTCTGGTTCAAGATGCGGTCTTCTATTTTATGGTGTATTACCTTTTAGTTATTTTATGCGTTGCTGGCTTGTTTCCTGAAATTTGGCTAGTACAATTTGACTTGTTATTACAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGGTGTGCATCAATAGCACCTATTTTATTATTGCAAAACTTGCTGATAGCAGTCCTTTTGTTTTGATAATTTTGAAGCATTTCAAGCGTTCTTCTGTCTTGAAAGTCTTCGGCTATTCCTTTGTCCTGAGTCATATGTGAGAATTTCAATCATCTAAGCACAGGATGGTGAAGATATGGAATTATTAGATTAGAATTCACTTTGAAATATTCTGGTACAGCTCTAACAAAATTTTTGGAACGGGGCTCTACTTTCTACTTCACATTTATATTGTAAGTGGTTTTACGATTTTATCTTGGGGCACTTGCTTTAGAGTTAATGCTGTTTTGCAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATACCACTTTGCCTCTGCTCACTGATAGGCATGTAAATTGA

mRNA sequence

ATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATACCACTTTGCCTCTGCTCACTGATAGGCATGTAAATTGA

Coding sequence (CDS)

ATGGAGCAGGGGAAACAGGGAGTGGTAGTTAAATTCACTCCTCCTCAGAACCCTGTGGAGCAAATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGAACGTGGTTGGCCAAGCAGTCTCTCCCTGTTGAGGCCGCCGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGATGTTTCTTCTTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGGTCTGGGGCTATGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCAGCAAACGCTGTTACCTCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGTTAGGGGAAAAATTTTCTCAACCACCTGTGGAAGATATGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATACCACTTTGCCTCTGCTCACTGATAGGCATGTAAATTGA

Protein sequence

MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAIGGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN

Homology

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BLAST of Cla000311 vs. TrEMBL
Match: A0A0A0KJR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139080 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 6.1e-119
Identity = 223/228 (97.81%), Postives = 224/228 (98.25%), Query Frame = 1


Query: 1   MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60
           MEQGKQGVVVK  P QNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60

Query: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120
           GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKF 180
           MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQA NAVTSGLFFALVQGGLFKLGEKF
Sbjct: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFKLGEKF 180

Query: 181 SQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN 229
           SQPPVED+YYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN
Sbjct: 181 SQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN 228

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BLAST of Cla000311 vs. TrEMBL
Match: M5XLV4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010176mg PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 2.1e-103
Identity = 196/226 (86.73%), Postives = 211/226 (93.36%), Query Frame = 1


Query: 1   MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60
           M+QGKQGV+V     QNP+EQ+QARFKELE+GF+ WLAKQSLPVEAAVVT+TS AQGAAI
Sbjct: 1   MQQGKQGVMVIPQQNQNPIEQLQARFKELESGFKGWLAKQSLPVEAAVVTLTSGAQGAAI 60

Query: 61  GGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 120
           G FMGTLTNDVSSSLPTP  QAGLNPQAMASFKQAQALAGGPL+QARNFAVMTGVNAGIS
Sbjct: 61  GAFMGTLTNDVSSSLPTPPPQAGLNPQAMASFKQAQALAGGPLIQARNFAVMTGVNAGIS 120

Query: 121 SVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGE 180
            VMKRLRGKEDVQSSMVAAFGSGA+FSLVSGMGGPNQAANA TSGLFFALVQGGLFKLG+
Sbjct: 121 CVMKRLRGKEDVQSSMVAAFGSGALFSLVSGMGGPNQAANAATSGLFFALVQGGLFKLGQ 180

Query: 181 KFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           KFSQPP ED+YY+KTRSML+NLGLQ+YEKNFKKGLL+D TLPLL D
Sbjct: 181 KFSQPPTEDIYYSKTRSMLSNLGLQNYEKNFKKGLLSDNTLPLLND 226

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BLAST of Cla000311 vs. TrEMBL
Match: A0A061G2Z0_THECC (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein OS=Theobroma cacao GN=TCM_015552 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.4e-101
Identity = 191/226 (84.51%), Postives = 214/226 (94.69%), Query Frame = 1


Query: 1   MEQGK-QGVVV-KFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 60
           ME+GK QG++V +  P QNP+EQ+QA+FKE+ENGFRTWLAKQS+PVEAAVVT TSAAQGA
Sbjct: 50  MERGKEQGLMVPRLMPQQNPLEQLQAKFKEVENGFRTWLAKQSMPVEAAVVTGTSAAQGA 109

Query: 61  AIGGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 120
           AIG FMGTLTND+SSSLPTPQ+ LNPQAMAS +QAQAL+GGPLVQARNFAVMTGVNAGIS
Sbjct: 110 AIGAFMGTLTNDISSSLPTPQSSLNPQAMASLQQAQALSGGPLVQARNFAVMTGVNAGIS 169

Query: 121 SVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGE 180
            VM+RLRGKEDVQSSMVAAFGSGAMFSLVSG+GGPNQAANAV+SGLFFALVQGGLF+LG+
Sbjct: 170 CVMRRLRGKEDVQSSMVAAFGSGAMFSLVSGIGGPNQAANAVSSGLFFALVQGGLFQLGK 229

Query: 181 KFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           KFSQPP ED YY++TRSMLN+LGLQ+YEKNFKKGLLTD+TLPLLTD
Sbjct: 230 KFSQPPAEDPYYSRTRSMLNSLGLQNYEKNFKKGLLTDSTLPLLTD 275

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BLAST of Cla000311 vs. TrEMBL
Match: A0A058ZY00_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00480 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 5.8e-101
Identity = 191/226 (84.51%), Postives = 208/226 (92.04%), Query Frame = 1


Query: 1   MEQGKQGVVV-KFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAA 60
           MEQGK+G+VV K  PP NP+EQ+Q+RFKE+E GF+ WL+KQSLPVEAAVVT T A QGAA
Sbjct: 1   MEQGKRGIVVSKLLPPNNPIEQLQSRFKEIEAGFKDWLSKQSLPVEAAVVTATGATQGAA 60

Query: 61  IGGFMGTLTNDVSSSL-PTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 120
           IG  MGTLTNDVS+SL P P A LNPQAMAS KQAQAL+GGPL+QARNFAVMTGVNAGIS
Sbjct: 61  IGAIMGTLTNDVSASLGPPPGANLNPQAMASLKQAQALSGGPLIQARNFAVMTGVNAGIS 120

Query: 121 SVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGE 180
            VMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSG FFALVQGGLFKLG+
Sbjct: 121 CVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGFFFALVQGGLFKLGQ 180

Query: 181 KFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           KFSQPPVED+YY++TRSML+NLGLQ+YEKNFKKGLLTDTTLPLLTD
Sbjct: 181 KFSQPPVEDVYYSQTRSMLSNLGLQNYEKNFKKGLLTDTTLPLLTD 226

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BLAST of Cla000311 vs. TrEMBL
Match: A0A058ZZ62_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00480 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 5.8e-101
Identity = 191/226 (84.51%), Postives = 208/226 (92.04%), Query Frame = 1


Query: 1   MEQGKQGVVV-KFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAA 60
           MEQGK+G+VV K  PP NP+EQ+Q+RFKE+E GF+ WL+KQSLPVEAAVVT T A QGAA
Sbjct: 1   MEQGKRGIVVSKLLPPNNPIEQLQSRFKEIEAGFKDWLSKQSLPVEAAVVTATGATQGAA 60

Query: 61  IGGFMGTLTNDVSSSL-PTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 120
           IG  MGTLTNDVS+SL P P A LNPQAMAS KQAQAL+GGPL+QARNFAVMTGVNAGIS
Sbjct: 61  IGAIMGTLTNDVSASLGPPPGANLNPQAMASLKQAQALSGGPLIQARNFAVMTGVNAGIS 120

Query: 121 SVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGE 180
            VMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSG FFALVQGGLFKLG+
Sbjct: 121 CVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGFFFALVQGGLFKLGQ 180

Query: 181 KFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           KFSQPPVED+YY++TRSML+NLGLQ+YEKNFKKGLLTDTTLPLLTD
Sbjct: 181 KFSQPPVEDVYYSQTRSMLSNLGLQNYEKNFKKGLLTDTTLPLLTD 226

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BLAST of Cla000311 vs. TAIR10
Match: AT5G24650.1 (AT5G24650.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 263.8 bits (673), Expect = 9.5e-71
Identity = 135/209 (64.59%), Postives = 160/209 (76.56%), Query Frame = 1


Query: 16  QNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAIGGFMGTLTNDVSSSL 75
           QNP++Q Q +FKE+E GF++WL+KQ LPVEAAVVT     QGA IGG MGTL+ ++    
Sbjct: 24  QNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTLSPEM---- 83

Query: 76  PTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSSMV 135
             PQAG++PQAMAS KQ QAL GGPLVQARNFA +TGVNAGI+ VMKR+RGKED++S++V
Sbjct: 84  --PQAGIDPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIRGKEDLESAVV 143

Query: 136 AAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKFSQPPVEDMYYAKTRS 195
           AAFGSG  +SLVS  G   Q  NA+T+   FA+ QG  FKLGE+FS+P VED YY + RS
Sbjct: 144 AAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFKLGERFSKPSVEDPYYTRGRS 203

Query: 196 MLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           ML  LGL+ YEKNFKKGLL D TLPLLTD
Sbjct: 204 MLLKLGLEKYEKNFKKGLLADPTLPLLTD 225

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BLAST of Cla000311 vs. TAIR10
Match: AT3G49560.1 (AT3G49560.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 258.1 bits (658), Expect = 5.2e-69
Identity = 132/213 (61.97%), Postives = 162/213 (76.06%), Query Frame = 1


Query: 12  FTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAIGGFMGTLTNDV 71
           F   QNP++Q Q +FKE+E  F+TWL+KQS+PVEAAVV+  S  QGA IGG MGTL+ ++
Sbjct: 25  FNDQQNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSPEM 84

Query: 72  SSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQ 131
                 PQAG++PQA+AS KQAQAL GGP VQARNFA +TGVNAGI+SVMKR+RGKED++
Sbjct: 85  ------PQAGVDPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGKEDIE 144

Query: 132 SSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKFSQPPVEDMYYA 191
           S++VAA GSG  +SLVS  G   Q  NA+T+   FA+ QG  FKLGE+FS+P  ED ++ 
Sbjct: 145 SAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKLGERFSKPSTEDPFFT 204

Query: 192 KTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           + R+ML  LGL+ YEKNFKKGLLTD TLPLLTD
Sbjct: 205 RGRTMLVKLGLEKYEKNFKKGLLTDPTLPLLTD 230

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BLAST of Cla000311 vs. NCBI nr
Match: gi|700194651|gb|KGN49828.1| (hypothetical protein Csa_5G139080 [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 8.8e-119
Identity = 223/228 (97.81%), Postives = 224/228 (98.25%), Query Frame = 1


Query: 1   MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60
           MEQGKQGVVVK  P QNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60

Query: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120
           GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKF 180
           MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQA NAVTSGLFFALVQGGLFKLGEKF
Sbjct: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFKLGEKF 180

Query: 181 SQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN 229
           SQPPVED+YYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN
Sbjct: 181 SQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRHVN 228

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BLAST of Cla000311 vs. NCBI nr
Match: gi|659074526|ref|XP_008437651.1| (PREDICTED: uncharacterized protein LOC103482996 [Cucumis melo])

HSP 1 Score: 430.6 bits (1106), Expect = 1.7e-117
Identity = 220/224 (98.21%), Postives = 222/224 (99.11%), Query Frame = 1


Query: 1   MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60
           MEQGKQGVVVK TPPQNP+EQIQARFKELENGFRTWLAKQSLPVEAAVVT TSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLTPPQNPLEQIQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120
           GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKF 180
           MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKF
Sbjct: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKF 180

Query: 181 SQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           SQPPVED+YYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD
Sbjct: 181 SQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 224

[Close]

BLAST of Cla000311 vs. NCBI nr
Match: gi|449456433|ref|XP_004145954.1| (PREDICTED: uncharacterized protein LOC101208652 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 4.1e-116
Identity = 219/224 (97.77%), Postives = 220/224 (98.21%), Query Frame = 1


Query: 1   MEQGKQGVVVKFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60
           MEQGKQGVVVK  P QNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAI 60

Query: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120
           GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLGEKF 180
           MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQA NAVTSGLFFALVQGGLFKLGEKF
Sbjct: 121 MKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFKLGEKF 180

Query: 181 SQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           SQPPVED+YYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD
Sbjct: 181 SQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 224

[Close]

BLAST of Cla000311 vs. NCBI nr
Match: gi|657945823|ref|XP_008381679.1| (PREDICTED: uncharacterized protein LOC103444516 [Malus domestica])

HSP 1 Score: 396.4 bits (1017), Expect = 3.5e-107
Identity = 205/227 (90.31%), Postives = 214/227 (94.27%), Query Frame = 1


Query: 1   MEQGKQGVVV-KFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAA 60
           MEQGKQGV+V K  PPQNP+EQ+QARFKELE GFR WLAKQSLPVEAAVVT+TS AQGAA
Sbjct: 1   MEQGKQGVMVAKMVPPQNPIEQLQARFKELEAGFRGWLAKQSLPVEAAVVTLTSGAQGAA 60

Query: 61  IGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGI 120
           IG FMGTLTNDVSSSLPTP  QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGI
Sbjct: 61  IGAFMGTLTNDVSSSLPTPPPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGI 120

Query: 121 SSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLG 180
           S VMKR+RGKEDVQSSMVAAFGSGA+FSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLG
Sbjct: 121 SCVMKRVRGKEDVQSSMVAAFGSGALFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLG 180

Query: 181 EKFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           +KFSQPP ED+YYAKTRSMLNNLGLQSYEKNFKKGLL+D TLPLL D
Sbjct: 181 QKFSQPPTEDIYYAKTRSMLNNLGLQSYEKNFKKGLLSDNTLPLLND 227

[Close]

BLAST of Cla000311 vs. NCBI nr
Match: gi|694321447|ref|XP_009351884.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri])

HSP 1 Score: 391.7 bits (1005), Expect = 8.6e-106
Identity = 203/227 (89.43%), Postives = 212/227 (93.39%), Query Frame = 1


Query: 1   MEQGKQGVVV-KFTPPQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAA 60
           MEQGKQGV+V K  PPQNP+EQ+QARFKELE GFR WLAKQSLPVEAAVVT+TS AQGAA
Sbjct: 1   MEQGKQGVMVAKMVPPQNPIEQLQARFKELEAGFRGWLAKQSLPVEAAVVTLTSGAQGAA 60

Query: 61  IGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGI 120
           IG FMGTLTNDVSSSLPTP  QA LNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGI
Sbjct: 61  IGAFMGTLTNDVSSSLPTPPPQASLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGI 120

Query: 121 SSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKLG 180
           S VMKR+RGKEDVQSSMVAAFGSGA+FSLVSGM GPNQAANAVTSGLFFALVQGGLFKLG
Sbjct: 121 SCVMKRVRGKEDVQSSMVAAFGSGALFSLVSGMAGPNQAANAVTSGLFFALVQGGLFKLG 180

Query: 181 EKFSQPPVEDMYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 225
           +KFSQPP ED+YYAKTRSMLNNLGLQSYEKNFKKGLL+D TLPLL D
Sbjct: 181 QKFSQPPTEDIYYAKTRSMLNNLGLQSYEKNFKKGLLSDNTLPLLND 227

The following BLAST results are available for this feature:

BLAST of Cla000311 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR1_CUCSA	6.1e-119	97.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139080 PE=4 SV=1	[more]
M5XLV4_PRUPE	2.1e-103	86.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010176mg PE=4 SV=1	[more]
A0A061G2Z0_THECC	3.4e-101	84.51	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
A0A058ZY00_EUCGR	5.8e-101	84.51	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00480 PE=4 SV=1	[more]
A0A058ZZ62_EUCGR	5.8e-101	84.51	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00480 PE=4 SV=1	[more]

BLAST of Cla000311 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24650.1	9.5e-71	64.59	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/...	[more]
AT3G49560.1	5.2e-69	61.97	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/...	[more]

BLAST of Cla000311 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194651\|gb\|KGN49828.1\|	8.8e-119	97.81	hypothetical protein Csa_5G139080 [Cucumis sativus]	[more]
gi\|659074526\|ref\|XP_008437651.1\|	1.7e-117	98.21	PREDICTED: uncharacterized protein LOC103482996 [Cucumis melo]	[more]
gi\|449456433\|ref\|XP_004145954.1\|	4.1e-116	97.77	PREDICTED: uncharacterized protein LOC101208652 [Cucumis sativus]	[more]
gi\|657945823\|ref\|XP_008381679.1\|	3.5e-107	90.31	PREDICTED: uncharacterized protein LOC103444516 [Malus domestica]	[more]
gi\|694321447\|ref\|XP_009351884.1\|	8.6e-106	89.43	PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045039	protein import into mitochondrial inner membrane
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0071806	protein transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0042721	mitochondrial inner membrane protein insertion complex
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008320	protein transmembrane transporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17542	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU17999	watermelon EST collection version 2.0	transcribed_cluster
WMU31177	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU61228	watermelon EST collection version 2.0	transcribed_cluster
WMU64105	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000311	Cla000311.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17999	WMU17999	transcribed_cluster
WMU31177	WMU31177	transcribed_cluster
WMU17542	WMU17542	transcribed_cluster
WMU61228	WMU61228	transcribed_cluster
WMU64105	WMU64105	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 47..166 score: 2.5
None	No IPR available	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 16..224 score: 1.1E
None	No IPR available	PANTHER	PTHR14110:SF6	SUBFAMILY NOT NAMED	coord: 16..224 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000311	Cla97C01G000010	Watermelon (97103) v2	wmwmbB000
Cla000311	Csa5G139080	Cucumber (Chinese Long) v2	cuwmB360
Cla000311	MELO3C005915	Melon (DHL92) v3.5.1	mewmB002
Cla000311	ClCG01G000020	Watermelon (Charleston Gray)	wcgwmB115
Cla000311	CSPI05G02840	Wild cucumber (PI 183967)	cpiwmB366
Cla000311	Cucsa.202450	Cucumber (Gy14) v1	cgywmB396
Cla000311	CmoCh15G010530	Cucurbita moschata (Rifu)	cmowmB242
Cla000311	LsiUNG001500	Bottle gourd (USVL1VR-Ls)	lsiwmB000
Cla000311	Cp4.1LG13g03400	Cucurbita pepo (Zucchini)	cpewmB164
Cla000311	CsGy5G000120	Cucumber (Gy14) v2	cgybwmB336
Cla000311	MELO3C005915.2	Melon (DHL92) v3.6.1	medwmB000
Cla000311	CsaV3_5G000150	Cucumber (Chinese Long) v3	cucwmB384
Cla000311	Bhi12G000610	Wax gourd	wgowmB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000311	Watermelon (97103) v1	wmwmB002