Cla000259 (gene) Watermelon (97103) v1

Overview
NameCla000259
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr0 : 15108517 .. 15109147 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCAAGCTCCTGCCTAAATGCATCACGAAATGTTCGTGAAGCATATGAGAGATGGATTAAGGCCAATAAAAAGGCTCGTGCATATATTTTGGCTAGCATGTCTGATGTATTAGCCAAAAAGTATGAGAACATGGTCTCTACTAGGGAGATCATGGATTTCTTGCATGGTATGTTTGGACAACTTTCCTCTCAGATCAAGCACAATGCTCTCAAATTCATCTTTAACTCACGGATGAACGAGGAACCATCTGTTAGAGAACATGTTCTCATCATGATGGTACACCTCAACGTGGTCAAGATGAATGGGGCAGTGATAGATGAAGACAGTCAGGTTAGCTTTATTCTAGAAACTCTTCCGAAGAGTTTTCTTCAATTCCTTAGCAACACTATTATGAACAAGCTTGCTGATAAGCACTTAAAAAGTGCTTTCTATCATCTCAAATTAAGGGAGCTTATATTATATTTCACTTCTTTGCTAGTGGTTTTCAGGTTAAAATGAGGAAAATTAAATGAAAAGACCAAAATATCAAACCAAGCAAGAATATGGTGAAAACAAGAAGAAAAACTCAAAGTTGCCACAATTGGGGCAGCGTTGCAGTGCCAGGACGGCGCTGCCGCGGCACTAA

mRNA sequence

ATGTCCTCAAGCTCCTGCCTAAATGCATCACGAAATGTTCGTGAAGCATATGAGAGATGGATTAAGGCCAATAAAAAGGCTCGTGCATATATTTTGGCTAGCATGTCTGATGTATTAGCCAAAAAGTATGAGAACATGGTCTCTACTAGGGAGATCATGGATTTCTTGCATGGTATGTTTGGACAACTTTCCTCTCAGATCAAGCACAATGCTCTCAAATTCATCTTTAACTCACGGATGAACGAGGAACCATCTGTTAGAGAACATGTTCTCATCATGATGGTACACCTCAACGTGGTCAAGATGAATGGGGCAGTGATAGATGAAGACAGTCAGCAAGAATATGGTGAAAACAAGAAGAAAAACTCAAAGTTGCCACAATTGGGGCAGCGTTGCAGTGCCAGGACGGCGCTGCCGCGGCACTAA

Coding sequence (CDS)

ATGTCCTCAAGCTCCTGCCTAAATGCATCACGAAATGTTCGTGAAGCATATGAGAGATGGATTAAGGCCAATAAAAAGGCTCGTGCATATATTTTGGCTAGCATGTCTGATGTATTAGCCAAAAAGTATGAGAACATGGTCTCTACTAGGGAGATCATGGATTTCTTGCATGGTATGTTTGGACAACTTTCCTCTCAGATCAAGCACAATGCTCTCAAATTCATCTTTAACTCACGGATGAACGAGGAACCATCTGTTAGAGAACATGTTCTCATCATGATGGTACACCTCAACGTGGTCAAGATGAATGGGGCAGTGATAGATGAAGACAGTCAGCAAGAATATGGTGAAAACAAGAAGAAAAACTCAAAGTTGCCACAATTGGGGCAGCGTTGCAGTGCCAGGACGGCGCTGCCGCGGCACTAA

Protein sequence

MSSSSCLNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQIKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEYGENKKKNSKLPQLGQRCSARTALPRH
Homology
[Close]
BLAST of Cla000259 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 62/109 (56.88%), Postives = 82/109 (75.23%), Query Frame = 1 

Query: 7   LNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQ 66
           LNA+R VREAY+RW+KAN KAR YILASM+DVLAKK++++ + + IMD L  MFGQ S  
Sbjct: 49  LNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWS 108

Query: 67  IKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEY 116
           ++H A+K I+  RM E  SVREHVL MM+H N+ ++NG  IDE +Q  +
Sbjct: 109 LRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSF 157

[Close]
BLAST of Cla000259 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 7   LNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQ 66
           LNA+R VREAY+RW KAN KA  YILASM+DVLAKKY+++ +T+ IMD    MFGQ S  
Sbjct: 49  LNANRTVREAYDRWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWS 108

Query: 67  IKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEY 116
           ++H A+K I+  RM E  SVREHVL MM+H N+ K++G  IDE +Q  +
Sbjct: 109 LRHEAIKRIYTKRMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSF 157

[Close]
BLAST of Cla000259 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-19
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 8   NASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQI 67
           NA++  RE Y+RWIKAN KA+ ++LASMSDVL KK+E M +  EIM+ L  MFG  S + 
Sbjct: 50  NATKTAREPYDRWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKA 109

Query: 68  KHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQ 113
           + +A++   N +M +  SV+ HVL M+ HL+  ++NGA IDE +Q
Sbjct: 110 RLDAVRAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQ 154

[Close]
BLAST of Cla000259 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 1 

Query: 7   LNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQ 66
           +NAS+  RE Y+RWIKAN KA+ ++LASMSDVL KK+E M +  EIM+ L  +FG  S +
Sbjct: 49  VNASKTAREPYDRWIKANNKAKCFMLASMSDVLHKKHEEMETAYEIMESLEAIFGAPSEK 108

Query: 67  IKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQ 113
              +A++   N +M +  SV+ HVL M+ HL+  ++NGA IDE +Q
Sbjct: 109 AHLDAVRAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQ 154

[Close]
BLAST of Cla000259 vs. TrEMBL
Match: W9RV37_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 1 

Query: 7   LNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQ 66
           +NA++  RE Y+RWIKAN KA+ ++LASMSDVL KK+E M +  EIM+ L  MFG  S +
Sbjct: 24  VNATKTAREPYDRWIKANNKAKCFMLASMSDVLRKKHEEMETAYEIMESLEAMFGPPSEK 83

Query: 67  IKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQ 113
            +  A++   N +M +  SV+ HVL M+ HL+  ++NGA IDE ++
Sbjct: 84  ARLAAVRAFMNDKMKKGSSVKVHVLNMIDHLHDAELNGARIDETTK 129

[Close]
BLAST of Cla000259 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1 

Query: 8   NASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQI 67
           NA+R VREAYERW KAN+KARAYILAS+S VLAKK+E+M++TREIMD L  MFGQ S QI
Sbjct: 49  NATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQI 108

Query: 68  KHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDS 112
           KH+ALK+I+N+RMNE  SVREHVL MMVH NV +MNGAVIDE S
Sbjct: 109 KHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS 152

[Close]
BLAST of Cla000259 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 1 

Query: 5   SCLNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLS 64
           S  NA+R VREAYERW KAN+KARAY+LAS+S+VLAKK E+M++ REIMD L  MFGQ S
Sbjct: 47  SAANATRTVREAYERWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQAS 106

Query: 65  SQIKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEY 116
            QIKH+ALK+I+N+RMN+   VREHVL MMV+ NV +MNGAVIDE +Q  +
Sbjct: 107 YQIKHDALKYIYNARMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSF 157

[Close]
BLAST of Cla000259 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-28
Identity = 63/108 (58.33%), Postives = 84/108 (77.78%), Query Frame = 1 

Query: 8   NASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQI 67
           NA+R  REAY+RWIKAN+KAR YILASMSDVLAKK+E++ + +EIMD L GMFGQ    +
Sbjct: 50  NANRTGREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSL 109

Query: 68  KHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEY 116
           +H A+K+I+  RM E  SVREHVL MM+H N+ ++NG +I+E +Q  +
Sbjct: 110 RHEAVKYIYTKRMKEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQVSF 157

[Close]
BLAST of Cla000259 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 129.8 bits (325), Expect = 3.8e-27
Identity = 62/109 (56.88%), Postives = 82/109 (75.23%), Query Frame = 1 

Query: 7   LNASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQ 66
           LNA+R VREAY+RW+KAN KAR YILASM+DVLAKK++++ + + IMD L  MFGQ S  
Sbjct: 49  LNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWS 108

Query: 67  IKHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEY 116
           ++H A+K I+  RM E  SVREHVL MM+H N+ ++NG  IDE +Q  +
Sbjct: 109 LRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSF 157

[Close]
BLAST of Cla000259 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 8.4e-27
Identity = 59/108 (54.63%), Postives = 82/108 (75.93%), Query Frame = 1 

Query: 8   NASRNVREAYERWIKANKKARAYILASMSDVLAKKYENMVSTREIMDFLHGMFGQLSSQI 67
           NAS+  R+AY+RWIKAN+KAR YILASMSDVLAKK+E++ + +EIM+ L GMFGQ    +
Sbjct: 50  NASQTSRKAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSL 109

Query: 68  KHNALKFIFNSRMNEEPSVREHVLIMMVHLNVVKMNGAVIDEDSQQEY 116
           +H  +K+I+  RM E  S++EHVL MM+H N+ ++NG  IDE +Q  +
Sbjct: 110 RHETIKYIYTKRMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSF 157

The following BLAST results are available for this feature:
BLAST of Cla000259 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI2.6e-2756.88Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI6.4e-2656.88Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA2.6e-1948.57Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RVT2_9ROSA1.0e-1848.11Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1[more]
W9RV37_9ROSA1.7e-1847.17Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1[more]
BLAST of Cla000259 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072276|ref|XP_008464721.1|1.1e-3475.00PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo][more]
gi|659113933|ref|XP_008456826.1|1.0e-3266.67PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|2.0e-2858.33PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|299474487|gb|ADJ18449.1|3.8e-2756.88gag/pol protein [Bryonia dioica][more]
gi|659086056|ref|XP_008443743.1|8.4e-2754.63PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000259Cla000259.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 20..111
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000259Watermelon (97103) v1wmwmB000
Cla000259Watermelon (97103) v1wmwmB001
Cla000259Watermelon (97103) v1wmwmB002
Cla000259Watermelon (97103) v1wmwmB005