Cla000222 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000222
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 9330804 .. 9331064 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTGAAGAGGAAATGAGGGAAGAAGAAAGAATAGAAAAGGCAGCCGAGGAGCTTGAGAGAGAGCTACAAATAGAAGAGGATGAGGAGCTGGCTGCTAGAATAAAAGCCAAAGAAGATGGGAAGGGCAAGAAGAAAAAGAAGAAGAGAAGTAGGCATCATTCGCCTACAAGGAAAGAACGCATTGGGGAGGATGCGAGAGAGGAACAAGGTGTTAGCACCTTGAAGAAGAAGAAGAAGAGAGAAAAAGAGGTGTAA

mRNA sequence

ATGGCATTTGAAGAGGAAATGAGGGAAGAAGAAAGAATAGAAAAGGCAGCCGAGGAGCTTGAGAGAGAGCTACAAATAGAAGAGGATGAGGAGCTGGCTGCTAGAATAAAAGCCAAAGAAGATGGGAAGGGCAAGAAGAAAAAGAAGAAGAGAAGTAGGCATCATTCGCCTACAAGGAAAGAACGCATTGGGGAGGATGCGAGAGAGGAACAAGGTGTTAGCACCTTGAAGAAGAAGAAGAAGAGAGAAAAAGAGGTGTAA

Coding sequence (CDS)

ATGGCATTTGAAGAGGAAATGAGGGAAGAAGAAAGAATAGAAAAGGCAGCCGAGGAGCTTGAGAGAGAGCTACAAATAGAAGAGGATGAGGAGCTGGCTGCTAGAATAAAAGCCAAAGAAGATGGGAAGGGCAAGAAGAAAAAGAAGAAGAGAAGTAGGCATCATTCGCCTACAAGGAAAGAACGCATTGGGGAGGATGCGAGAGAGGAACAAGGTGTTAGCACCTTGAAGAAGAAGAAGAAGAGAGAAAAAGAGGTGTAA

Protein sequence

MAFEEEMREEERIEKAAEELERELQIEEDEELAARIKAKEDGKGKKKKKKRSRHHSPTRKERIGEDAREEQGVSTLKKKKKREKEV

Homology

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BLAST of Cla000222 vs. NCBI nr
Match: gi|918306626|gb|KOF78614.1| (hypothetical protein OCBIM_22030507mg [Octopus bimaculoides])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 4  EEEMREEERIEKAAEELERELQIEEDEELAARIKAKEDGKGKKKKKKRS---RHHSPTRK 63
          EEE  EEE  E+  EE E E + EE+EE A ++K K+  K KKKKKK+    R      +
Sbjct: 11 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEAKKVKKKKKKKKKKKKKKKKKKLRRRKEEEE 70

Query: 64 ERIGEDAREEQGVSTLKKKKKREKE 86
          E   E+  EE+     KKKKK++K+
Sbjct: 71 EEEEEEEEEEEEEKEEKKKKKKKKK 95

The following BLAST results are available for this feature:

BLAST of Cla000222 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|918306626\|gb\|KOF78614.1\|	1.7e-06	42.35	hypothetical protein OCBIM_22030507mg [Octopus bimaculoides]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000222	Cla000222.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..37 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000222	Watermelon (97103) v1	wmwmB000