Cla000204 (gene) Watermelon (97103) v1

Overview
NameCla000204
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 10172336 .. 10173255 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGAATTACGCGATAGCAGCCAAGCTCTCTATTCCAACTTCAGTTTCACCATGGAAACGACCCGAACTCTCCACAACTTCCCTAGACACGTTCTCCTACACCTACATCTCCTCGTCTCTCAGCCATAAAATAGAGCCGATTTGACCTTTTGGTCGTGTTTAGAATGATTAAACTCTCAACTTACTCATTTATATAGGTCGCTGATTTAACTGCTACTCATTTTTTTCCTTTATAAACGAGTTGACCAACGCATAGCACCTCTTCTCAACCTCACCAATGCATAGCCTTATCCCACCAACACATAATATAGCTTATGAACGCATAGCCTTTGCTCATGAATGCATGGTATTGCCCATAAACGCATAGCATTTCTCTTGAACGCATGGTATTGCCCATAAACGCATAGCATTGCTCTTGAATGCATGGTATAGCTTCCAACACATGCTAGCTCTCACACTCTTGTTCTCAACCCACCTTTCTCTTCACCAACACATAATACATTACCACCTTAAGCTTGCCAACTTCCAAAGCTAAGTGTGTGGCTTACATACGAGCTTGGATTGAGTGGAAAGGATAACACGAAGAGCAACATTGATTAGTCGTTGTTCGATGATGTGAAGGACTTGGATTTCTTCAAAAGTTGGGATTGGGGTGAAATTATATGGAAGCAGACCTTCAGTGGCCTTCAGAAGGTCTTGAGGGACAAGGTTTTCGCATACAAGCAGAAGGTTCATGCCAACCATAAGTACTTGGTTAAGTATAACCTACTGGCCTTCCCTCACGCCTTCCAGGTAATGACTATTTTAATAATTTACTGTTGTCTATTACATCTTTGTCTTTGCACTAACTATTTTGAGTTCGTTAGGTATGGGCATATAAGACGATATCTACGATTGGCAGTACAGCTGCGGTCTAG

mRNA sequence

ATGCCCGAATTACGCGATAGCAGCCAAGCTCTCTATTCCAACTTCAGTTTCACCATGGAAACGACCCGAACTCTCCACAACTTCCCTAGACACGACTTGGATTTCTTCAAAAGTTGGGATTGGGGTGAAATTATATGGAAGCAGACCTTCAGTGGCCTTCAGAAGGTCTTGAGGGACAAGGTTTTCGCATACAAGCAGAAGGTTCATGCCAACCATAAGTACTTGGTTAAGTATAACCTACTGGCCTTCCCTCACGCCTTCCAGGTATGGGCATATAAGACGATATCTACGATTGGCAGTACAGCTGCGGTCTAG

Coding sequence (CDS)

ATGCCCGAATTACGCGATAGCAGCCAAGCTCTCTATTCCAACTTCAGTTTCACCATGGAAACGACCCGAACTCTCCACAACTTCCCTAGACACGACTTGGATTTCTTCAAAAGTTGGGATTGGGGTGAAATTATATGGAAGCAGACCTTCAGTGGCCTTCAGAAGGTCTTGAGGGACAAGGTTTTCGCATACAAGCAGAAGGTTCATGCCAACCATAAGTACTTGGTTAAGTATAACCTACTGGCCTTCCCTCACGCCTTCCAGGTATGGGCATATAAGACGATATCTACGATTGGCAGTACAGCTGCGGTCTAG

Protein sequence

MPELRDSSQALYSNFSFTMETTRTLHNFPRHDLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWAYKTISTIGSTAAV
Homology
[Close]
BLAST of Cla000204 vs. TrEMBL
Match: A0A0A0KM59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 32  DLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWA 91
           DL ++ S DWG I+W++T  GLQ  L++KV  YK+KV  N  Y VKY+L  FPHAFQVWA
Sbjct: 184 DLKYYNSLDWGHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWA 243

Query: 92  YKTISTIGSTA 103
           Y+ IS+I   A
Sbjct: 244 YEIISSIAGKA 254

[Close]
BLAST of Cla000204 vs. TrEMBL
Match: A5AN77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008804 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 1 

Query: 33  LDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYK----QKVHANHKYLVKYNLLAFPHAFQ 92
           L+ F  + WG I +++T SGLQ+ L ++V  Y+    QK +  H+    Y+L+ FP+ FQ
Sbjct: 34  LEVFNKYPWGRICYERTISGLQRALENRVSKYQGKKQQKGNIAHE---AYSLVGFPYVFQ 93

Query: 93  VWAYKTISTIG 100
           VW Y+TIS IG
Sbjct: 94  VWVYETISIIG 101

[Close]
BLAST of Cla000204 vs. NCBI nr
Match: gi|778699090|ref|XP_011654656.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 32  DLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWA 91
           DL ++ S DWG I+W++T  GLQ  L++KV  YK+KV  N  Y VKY+L  FPHAFQVWA
Sbjct: 267 DLKYYNSLDWGHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWA 326

Query: 92  YKTISTIGSTA 103
           Y+ IS+I   A
Sbjct: 327 YEIISSIAGKA 337

[Close]
BLAST of Cla000204 vs. NCBI nr
Match: gi|659074245|ref|XP_008437500.1| (PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 32  DLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWA 91
           DL ++ S DWG I+W++T  GLQ  L++KV  YK+KV  N  Y VKY+L  FPHAFQVWA
Sbjct: 267 DLKYYNSLDWGHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWA 326

Query: 92  YKTISTIGSTAAV 105
           Y+ IS++ +  AV
Sbjct: 327 YEIISSMAAGRAV 339

[Close]
BLAST of Cla000204 vs. NCBI nr
Match: gi|700194767|gb|KGN49944.1| (hypothetical protein Csa_5G141180 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 32  DLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWA 91
           DL ++ S DWG I+W++T  GLQ  L++KV  YK+KV  N  Y VKY+L  FPHAFQVWA
Sbjct: 184 DLKYYNSLDWGHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWA 243

Query: 92  YKTISTIGSTA 103
           Y+ IS+I   A
Sbjct: 244 YEIISSIAGKA 254

[Close]
BLAST of Cla000204 vs. NCBI nr
Match: gi|778699094|ref|XP_011654657.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 32  DLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWA 91
           DL ++ S DWG I+W++T  GLQ  L++KV  YK+KV  N  Y VKY+L  FPHAFQVWA
Sbjct: 265 DLKYYNSLDWGHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWA 324

Query: 92  YKTISTIGSTA 103
           Y+ IS+I   A
Sbjct: 325 YEIISSIAGKA 335

[Close]
BLAST of Cla000204 vs. NCBI nr
Match: gi|659074247|ref|XP_008437501.1| (PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 32  DLDFFKSWDWGEIIWKQTFSGLQKVLRDKVFAYKQKVHANHKYLVKYNLLAFPHAFQVWA 91
           DL ++ S DWG I+W++T  GLQ  L++KV  YK+KV  N  Y VKY+L  FPHAFQVWA
Sbjct: 265 DLKYYNSLDWGHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWA 324

Query: 92  YKTISTIGSTAAV 105
           Y+ IS++ +  AV
Sbjct: 325 YEIISSMAAGRAV 337

The following BLAST results are available for this feature:
BLAST of Cla000204 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM59_CUCSA1.1e-1454.93Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1[more]
A5AN77_VITVI1.1e-0642.25Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008804 PE=4 SV=1[more]
BLAST of Cla000204 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778699090|ref|XP_011654656.1|1.6e-1454.93PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus][more]
gi|659074245|ref|XP_008437500.1|1.6e-1453.42PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo][more]
gi|700194767|gb|KGN49944.1|1.6e-1454.93hypothetical protein Csa_5G141180 [Cucumis sativus][more]
gi|778699094|ref|XP_011654657.1|1.6e-1454.93PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus][more]
gi|659074247|ref|XP_008437501.1|1.6e-1453.42PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000204Cla000204.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000204Watermelon (97103) v1wmwmB000
Cla000204Watermelon (97103) v1wmwmB001