Cla000201 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000201
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 21488274 .. 21488963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATCTCCTAGTAGCCTACGACCATTGGCCAACTTGTGGGTATACTTGGTGAAGAAGCGGCTGATCCCAACGACACATGACAAAACAGTGTCAAGGGATCGGGTGATGGCAACTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATCGCGGCGCAGATAAGAGAGGTGTTTAACAAGCCAAGAGGCCTACTCTTTTTCCTCACACTTATCATGACCCTGTACGCCAATGCTTCCATCGGAGAGCAGACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGCGGCGTAATCGCCCATAAAACTCTGTGTTGGTTGATGAGAGGATCCCAGCATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCATTCCGCCACCTAAAGTGTCGTCTCCAAAGCCACCAACGCAGAAGAAGTGGAAGGCATCCAAACTGAAACGCAAGGCTGTGGCAAGTCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCTCTTCACTCCCACTTCCAACAAATAGAAGAGAACCAACCCCACCTCCACCTCCTCCTGAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGA

mRNA sequence

ATGCTATCTCCTAGTAGCCTACGACCATTGGCCAACTTGTGGGTATACTTGGTGAAGAAGCGGCTGATCCCAACGACACATGACAAAACAGTGTCAAGGGATCGGGTGATGGCAACTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATCGCGGCGCAGATAAGAGAGGTGTTTAACAAGCCAAGAGGCCTACTCTTTTTCCTCACACTTATCATGACCCTGTACGCCAATGCTTCCATCGGAGAGCAGACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGCGGCGTAATCGCCCATAAAACTCTGTGTTGGTTGATGAGAGGATCCCAGCATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCATTCCGCCACCTAAAGTGTCGTCTCCAAAGCCACCAACGCAGAAGAAGTGGAAGGCATCCAAACTGAAACGCAAGGCTGTGGCAAGTCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCTCTTCACTCCCACTTCCAACAAATAGAAGAGAACCAACCCCACCTCCACCTCCTCCTGAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGA

Coding sequence (CDS)

ATGCTATCTCCTAGTAGCCTACGACCATTGGCCAACTTGTGGGTATACTTGGTGAAGAAGCGGCTGATCCCAACGACACATGACAAAACAGTGTCAAGGGATCGGGTGATGGCAACTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATCGCGGCGCAGATAAGAGAGGTGTTTAACAAGCCAAGAGGCCTACTCTTTTTCCTCACACTTATCATGACCCTGTACGCCAATGCTTCCATCGGAGAGCAGACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGCGGCGTAATCGCCCATAAAACTCTGTGTTGGTTGATGAGAGGATCCCAGCATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCATTCCGCCACCTAAAGTGTCGTCTCCAAAGCCACCAACGCAGAAGAAGTGGAAGGCATCCAAACTGAAACGCAAGGCTGTGGCAAGTCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCTCTTCACTCCCACTTCCAACAAATAGAAGAGAACCAACCCCACCTCCACCTCCTCCTGAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGA

Protein sequence

MLSPSSLRPLANLWVYLVKKRLIPTTHDKTVSRDRVMATYCIMRRIPLDVGRIIAAQIREVFNKPRGLLFFLTLIMTLYANASIGEQTEVLDAEKMIEVSGVIAHKTLCWLMRGSQHLPEPAKATKRPHQPIPPPKVSSPKPPTQKKWKASKLKRKAVASPDATIRPSPTSSSSLPLPTNRREPTPPPPPPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV

Homology

[Close]

BLAST of Cla000201 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.3e-07
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 13 LWVYLVKKRLIPTTHDKTVSRDRVMATYCIMRRIPLDVGRIIAAQIREVFNKPRGLLFFL 72
          +W+ L+KK+++PT H  T+S +RVM  YCIM++I +++G+II+  I  +   PRG   F 
Sbjct: 28 IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 73 TLIMTLYANASI 85
           LI  L   A +
Sbjct: 88 YLIEQLCLRACL 99

[Close]

BLAST of Cla000201 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 35/128 (27.34%), Postives = 64/128 (50.00%), Query Frame = 1


Query: 7   LRPLANLWVYLVKKRLIPTTHDKTVSRDRVMATYCIMRRIPLDVGRIIAAQIREVFNKPR 66
           L+P A +W + +  RL+ +TH KT+SR+R +  Y ++   P++VGR+I  QIR    K +
Sbjct: 186 LQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGK 245

Query: 67  GLLFFLTLIMTLYANASIGEQTEVLDAEKMIEVSGVIAHKTLCWLMRGSQHLPEPAKATK 126
           G L+F +LI  L   + +  +     +E  +  +G +    +  +  G     E  +  +
Sbjct: 246 GGLYFPSLISELCIQSHVAWEA----SEPRLRNTGAMDLVAITRISSGRSEKSEKGEEEE 305

Query: 127 RPHQPIPP 135
              +P  P
Sbjct: 306 EQDEPSRP 309

[Close]

BLAST of Cla000201 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 13 LWVYLVKKRLIPTTHDKTVSRDRVMATYCIMRRIPLDVGRIIAAQIREVFNKPRGLLFFL 72
          +W+ L+KK+++PT H  T+S +RVM  YCIM++I +++G+II+  I  +   PRG   F 
Sbjct: 28 IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 73 TLIMTLYANASI 85
           LI  L   A +
Sbjct: 88 YLIEQLCLRACL 99

[Close]

BLAST of Cla000201 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 35/128 (27.34%), Postives = 64/128 (50.00%), Query Frame = 1


Query: 7   LRPLANLWVYLVKKRLIPTTHDKTVSRDRVMATYCIMRRIPLDVGRIIAAQIREVFNKPR 66
           L+P A +W + +  RL+ +TH KT+SR+R +  Y ++   P++VGR+I  QIR    K +
Sbjct: 186 LQPAAKVWYHFLASRLLLSTHGKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGK 245

Query: 67  GLLFFLTLIMTLYANASIGEQTEVLDAEKMIEVSGVIAHKTLCWLMRGSQHLPEPAKATK 126
           G L+F +LI  L   + +  +     +E  +  +G +    +  +  G     E  +  +
Sbjct: 246 GGLYFPSLISELCIQSHVAWEA----SEPRLRNTGAMDLVAITRISSGRSEKSEKGEEEE 305

Query: 127 RPHQPIPP 135
              +P  P
Sbjct: 306 EQDEPSRP 309

The following BLAST results are available for this feature:

BLAST of Cla000201 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAN0_CUCSA	8.3e-07	40.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
W9RBS1_9ROSA	1.4e-06	27.34	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]

BLAST of Cla000201 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202594\|gb\|KGN57727.1\|	1.2e-06	40.28	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|703082781\|ref\|XP_010092041.1\|	2.0e-06	27.34	hypothetical protein L484_000844 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU78804	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000201	Cla000201.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU78804	WMU78804	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000201	Cucumber (Chinese Long) v3	cucwmB191
Cla000201	Wild cucumber (PI 183967)	cpiwmB182