Cla000138 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000138
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 7463996 .. 7464508 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCAGAAACCCACTTCCTCCAAAAGCCCTAAACCTATGGCCTCATCCTCAAGGCAGGGTAGTCGGAATCTGTCCACTACCTCCACCACACCTGAACCTCTCGCCATTGTTCGCCCCAACAGTCCTGAGTTGGAAGCGACATCATCCTCATCTCCGCCACGCTTCAGGGACCTGTCTGAAGCTCAAAAGATGGGGAGGAATGACGAATCCATCGTCTTCGGAGATATTCTAGACACCATTGATGAAGAAGACGATGACTGGTTGGACGGGTTGGTCGACCAAAGGACAAAAAACGAATCGTGTGGGTCAATCCCTGTGATGAGTGGTCTTGAGGAGTCGGACTCCGATGAAAGACCTATTGGCAAGGTAATAGCGGCGCTGGAAAGGAAGAAGTCCACCAAGGAAAAGAAAAATCAAGCCAGTAAGGGCCAGGGAAGAAGAAGTCGAGGAAGATATCCTTCGTCTAAGAAGAAAAAAAGAGAAAGCAACGGACGCGGGGACATCTGA

mRNA sequence

ATGGCTTCCCAGAAACCCACTTCCTCCAAAAGCCCTAAACCTATGGCCTCATCCTCAAGGCAGGGTAGTCGGAATCTGTCCACTACCTCCACCACACCTGAACCTCTCGCCATTGTTCGCCCCAACAGTCCTGAGTTGGAAGCGACATCATCCTCATCTCCGCCACGCTTCAGGGACCTGTCTGAAGCTCAAAAGATGGGGAGGAATGACGAATCCATCGTCTTCGGAGATATTCTAGACACCATTGATGAAGAAGACGATGACTGGTTGGACGGGTTGGTCGACCAAAGGACAAAAAACGAATCGTGTGGGTCAATCCCTGTGATGAGTGGTCTTGAGGAGTCGGACTCCGATGAAAGACCTATTGGCAAGGTAATAGCGGCGCTGGAAAGGAAGAAGTCCACCAAGGAAAAGAAAAATCAAGCCAGTAAGGGCCAGGGAAGAAGAAGTCGAGGAAGATATCCTTCGTCTAAGAAGAAAAAAAGAGAAAGCAACGGACGCGGGGACATCTGA

Coding sequence (CDS)

ATGGCTTCCCAGAAACCCACTTCCTCCAAAAGCCCTAAACCTATGGCCTCATCCTCAAGGCAGGGTAGTCGGAATCTGTCCACTACCTCCACCACACCTGAACCTCTCGCCATTGTTCGCCCCAACAGTCCTGAGTTGGAAGCGACATCATCCTCATCTCCGCCACGCTTCAGGGACCTGTCTGAAGCTCAAAAGATGGGGAGGAATGACGAATCCATCGTCTTCGGAGATATTCTAGACACCATTGATGAAGAAGACGATGACTGGTTGGACGGGTTGGTCGACCAAAGGACAAAAAACGAATCGTGTGGGTCAATCCCTGTGATGAGTGGTCTTGAGGAGTCGGACTCCGATGAAAGACCTATTGGCAAGGTAATAGCGGCGCTGGAAAGGAAGAAGTCCACCAAGGAAAAGAAAAATCAAGCCAGTAAGGGCCAGGGAAGAAGAAGTCGAGGAAGATATCCTTCGTCTAAGAAGAAAAAAAGAGAAAGCAACGGACGCGGGGACATCTGA

Protein sequence

MASQKPTSSKSPKPMASSSRQGSRNLSTTSTTPEPLAIVRPNSPELEATSSSSPPRFRDLSEAQKMGRNDESIVFGDILDTIDEEDDDWLDGLVDQRTKNESCGSIPVMSGLEESDSDERPIGKVIAALERKKSTKEKKNQASKGQGRRSRGRYPSSKKKKRESNGRGDI

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000138	Cla000138.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 126..146 scor
None	No IPR available	GENE3D	G3DSA:2.30.30.40		coord: 74..161 score: 9.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla000138	Cla000836	Watermelon (97103) v1	wmwmB000

The following block(s) are covering this gene:

None