Cla000137 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000137
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 7462600 .. 7463175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGACGCCCTCACAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGTCATTGGCGCCTAACTGCTTGATTGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGATCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGATCGGGCCATGGTCATTTATTGCATCATGCGGGGAATTCAGCTGGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTCTTCAAGCCAAGGGGTCAGTTGTTCTTCCCCTTTCTTGTGACTAGACTGTGCGCCAACACAGAGTTCATGGAGGATGTGGCAGTCAGAGCAGTGAATGGAGTCCTTTCAGCGCAAAGTTTGAGACGAATATTAAAGGACTCACCACATTTGCTTCACGCGGCCAACTCAAAGAAGAGGTCGCCAAAGTCACAAGAACCATTATCGCCCCAACTTCCTCAACCAAAGAAGAGGAAACTGGTCAAGAAGAATTTGGAGATTCAAGCGTCGAGTTCACAACCTGGTGAAGCCGAAGAAGCTTTTCAGCTCGACGCCTACACCTAA

mRNA sequence

ATGAATGACGCCCTCACAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGTCATTGGCGCCTAACTGCTTGATTGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGATCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGATCGGGCCATGGTCATTTATTGCATCATGCGGGGAATTCAGCTGGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTCTTCAAGCCAAGGGGTCAGTTGTTCTTCCCCTTTCTTGTGACTAGACTGTGCGCCAACACAGAGTTCATGGAGGATGTGGCAGTCAGAGCAGTGAATGGAGTCCTTTCAGCGCAAAGTTTGAGACGAATATTAAAGGACTCACCACATTTGCTTCACGCGGCCAACTCAAAGAAGAGGTCGCCAAAGTCACAAGAACCATTATCGCCCCAACTTCCTCAACCAAAGAAGAGGAAACTGGTCAAGAAGAATTTGGAGATTCAAGCGTCGAGTTCACAACCTGGTGAAGCCGAAGAAGCTTTTCAGCTCGACGCCTACACCTAA

Coding sequence (CDS)

ATGAATGACGCCCTCACAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGTCATTGGCGCCTAACTGCTTGATTGCCGAGGCCAACCTGTGGCTTTATTTCATCAAGCGATCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGATCGGGCCATGGTCATTTATTGCATCATGCGGGGAATTCAGCTGGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTCTTCAAGCCAAGGGGTCAGTTGTTCTTCCCCTTTCTTGTGACTAGACTGTGCGCCAACACAGAGTTCATGGAGGATGTGGCAGTCAGAGCAGTGAATGGAGTCCTTTCAGCGCAAAGTTTGAGACGAATATTAAAGGACTCACCACATTTGCTTCACGCGGCCAACTCAAAGAAGAGGTCGCCAAAGTCACAAGAACCATTATCGCCCCAACTTCCTCAACCAAAGAAGAGGAAACTGGTCAAGAAGAATTTGGAGATTCAAGCGTCGAGTTCACAACCTGGTGAAGCCGAAGAAGCTTTTCAGCTCGACGCCTACACCTAA

Protein sequence

MNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANTEFMEDVAVRAVNGVLSAQSLRRILKDSPHLLHAANSKKRSPKSQEPLSPQLPQPKKRKLVKKNLEIQASSSQPGEAEEAFQLDAYT

Homology

[Close]

BLAST of Cla000137 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 1   MNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAM 60
           + + L  IA  G++W  S KG  +   + L   A +W +F+   LL +TH  +ISR+RA+
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  VIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLC 103
           ++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ LC
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]

BLAST of Cla000137 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 31/102 (30.39%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 1   MNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAM 60
           +++ +  +   G+EW  + +G  +    CL     +W +F++  L+P++H   + ++RA+
Sbjct: 124 LDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAI 183

Query: 61  VIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLC 103
           ++YC+M+G  L+VGR+I  Q+     +  G L+FP L+T+LC
Sbjct: 184 LLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla000137 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 5   LTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAMVIYC 64
           L  +A  G+ W  SP+G  +     L   A +W +F+    +P+TH  ++++DR +++Y 
Sbjct: 89  LAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYS 148

Query: 65  IMRGIQLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRLC--ANTEFMEDVAVRAVNGVLS 124
           I+ GI +++  I   +I+     + RG L+FP L+T+L   AN  + +D A+    G +S
Sbjct: 149 ILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAIVHNAGAIS 208

Query: 125 AQSLRRI 129
             S+ RI
Sbjct: 209 TLSISRI 215

[Close]

BLAST of Cla000137 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 38/117 (32.48%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 36  LWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFP 95
           +WL  IK+ ++PT H ++IS +R M++YCIM+ I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  FLVTRLCANTEFMED--VAVRAVNGVLSAQSLRRILKDSPHLLHAANSKKRSPKSQE 151
           +L+ +LC     M +    V   +G+    +L RI+      +H   +K +  K++E
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII-----AIHKNKAKIKCLKTKE 139

[Close]

BLAST of Cla000137 vs. TrEMBL
Match: A0A061F2U9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 12  GSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIQL 71
           G++W TS     S   + +  E  +WL+F+   LL +TH + +++DRA++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 72  DVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCA 104
           DVG++I+  I       R  + FP L+T LCA
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCA 187

[Close]

BLAST of Cla000137 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 1   MNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAM 60
           + + L  IA  G++W  S KG  +   + L   A +W +F+   LL +TH  +ISR+RA+
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  VIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLC 103
           ++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ LC
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]

BLAST of Cla000137 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 31/102 (30.39%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 1   MNDALTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAM 60
           +++ +  +   G+EW  + +G  +    CL     +W +F++  L+P++H   + ++RA+
Sbjct: 124 LDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAI 183

Query: 61  VIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLC 103
           ++YC+M+G  L+VGR+I  Q+     +  G L+FP L+T+LC
Sbjct: 184 LLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla000137 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 5   LTIIAKPGSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAMVIYC 64
           L  +A  G+ W  SP+G  +     L   A +W +F+    +P+TH  ++++DR +++Y 
Sbjct: 89  LAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYS 148

Query: 65  IMRGIQLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRLC--ANTEFMEDVAVRAVNGVLS 124
           I+ GI +++  I   +I+     + RG L+FP L+T+L   AN  + +D A+    G +S
Sbjct: 149 ILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAIVHNAGAIS 208

Query: 125 AQSLRRI 129
             S+ RI
Sbjct: 209 TLSISRI 215

[Close]

BLAST of Cla000137 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 38/117 (32.48%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 36  LWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIQLDVGRIIAPQIRGLFFKPRGQLFFP 95
           +WL  IK+ ++PT H ++IS +R M++YCIM+ I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  FLVTRLCANTEFMED--VAVRAVNGVLSAQSLRRILKDSPHLLHAANSKKRSPKSQE 151
           +L+ +LC     M +    V   +G+    +L RI+      +H   +K +  K++E
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII-----AIHKNKAKIKCLKTKE 139

[Close]

BLAST of Cla000137 vs. NCBI nr
Match: gi|590634332|ref|XP_007028347.1| (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-07
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 12  GSEWNTSPKGIQSLAPNCLIAEANLWLYFIKRSLLPTTHDASISRDRAMVIYCIMRGIQL 71
           G++W TS     S   + +  E  +WL+F+   LL +TH + +++DRA++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 72  DVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCA 104
           DVG++I+  I       R  + FP L+T LCA
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCA 187

The following BLAST results are available for this feature:

BLAST of Cla000137 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	1.0e-10	37.25	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9S7D3_9ROSA	1.8e-10	30.39	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
W9QTD9_9ROSA	3.9e-10	30.71	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	7.4e-09	32.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A061F2U9_THECC	2.4e-07	34.78	Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1	[more]

BLAST of Cla000137 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	1.5e-10	37.25	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	2.5e-10	30.39	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	5.6e-10	30.71	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	1.1e-08	32.48	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|590634332\|ref\|XP_007028347.1\|	3.4e-07	34.78	Uncharacterized protein TCM_024087 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000137	Cla000137.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000137	Watermelon (97103) v1	wmwmB000