Cla000123 (gene) Watermelon (97103) v1

Overview
NameCla000123
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 2544753 .. 2545073 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAACTTATACGCAAGCCAAGGAGATCCTCGACAGAATTTCGAGGAACACTGATGAATGGGTGGATGATGGATATGGATTCAGGTACATGGACAAAAGACGAACGCAAGCTGGAATGATTGAAACGGATGCGACTAATAACCTTTCAGCTCAGATCGCCAACATGACATCCTTGCTGCAAACAATTGCACTAAACAACCAAGGTGGAACAGTTGCATCAATGGACGCAATGAACACGGTGAATGCAACAGCATCTGTAAGCTGTGTGCAATGTGGTGAGGGCCACTTATACGATATGTGTCCCTATAACCCATAG

mRNA sequence

ATGGACAAAACTTATACGCAAGCCAAGGAGATCCTCGACAGAATTTCGAGGAACACTGATGAATGGGTGGATGATGGATATGGATTCAGGTACATGGACAAAAGACGAACGCAAGCTGGAATGATTGAAACGGATGCGACTAATAACCTTTCAGCTCAGATCGCCAACATGACATCCTTGCTGCAAACAATTGCACTAAACAACCAAGGTGGAACAGTTGCATCAATGGACGCAATGAACACGGTGAATGCAACAGCATCTGTAAGCTGTGTGCAATGTGGTGAGGGCCACTTATACGATATGTGTCCCTATAACCCATAG

Coding sequence (CDS)

ATGGACAAAACTTATACGCAAGCCAAGGAGATCCTCGACAGAATTTCGAGGAACACTGATGAATGGGTGGATGATGGATATGGATTCAGGTACATGGACAAAAGACGAACGCAAGCTGGAATGATTGAAACGGATGCGACTAATAACCTTTCAGCTCAGATCGCCAACATGACATCCTTGCTGCAAACAATTGCACTAAACAACCAAGGTGGAACAGTTGCATCAATGGACGCAATGAACACGGTGAATGCAACAGCATCTGTAAGCTGTGTGCAATGTGGTGAGGGCCACTTATACGATATGTGTCCCTATAACCCATAG

Protein sequence

MDKTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSLLQTIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDMCPYNP
Homology
[Close]
BLAST of Cla000123 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.2e-09
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1 

Query: 1   MDKTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSL 60
           + K+Y +A EIL+ I+ N  +W +           R  AG++E DA   L+AQ+A+MT++
Sbjct: 208 LSKSYNEAFEILETIASNNYQWSNTR-----APTSRKVAGVLEVDAITALTAQMASMTNV 267

Query: 61  LQTIALNNQGGTVASMDAMNTVNATA----SVSCVQCGEGHLYDMCPYNP 107
           L+ +++ N         A N   A A     VSCV CGEGH+++ CP NP
Sbjct: 268 LKNLSIGN---------AKNIQPAAAIQSDDVSCVFCGEGHVFEKCPSNP 303

[Close]
BLAST of Cla000123 vs. TrEMBL
Match: W9RRR5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1 

Query: 3   KTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSLLQ 62
           K+Y +  EIL+R++ N  +W  +      +  R+T  G++E DA   LSAQ++N+T++ +
Sbjct: 84  KSYNEGYEILERMATNHYQWSPER-----LPTRKTP-GVLEVDAITALSAQVSNLTNMFK 143

Query: 63  TIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDMCPYNP 107
           T  +N   G       +N+V A  ++SCV CGEGH +  CP NP
Sbjct: 144 T--MNTSTG-------VNSVQAL-TLSCVYCGEGHQFKECPSNP 171

[Close]
BLAST of Cla000123 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1 

Query: 1   MDKTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSL 60
           + K+Y +A EIL+ I+ N  +W +           R  AG++E DA   L+AQ+A+MT++
Sbjct: 208 LSKSYNEAFEILETIASNNYQWSNTR-----APTSRKVAGVLEVDAITALTAQMASMTNV 267

Query: 61  LQTIALNNQGGTVASMDAMNTVNATA----SVSCVQCGEGHLYDMCPYNP 107
           L+ +++ N         A N   A A     VSCV CGEGH+++ CP NP
Sbjct: 268 LKNLSIGN---------AKNIQPAAAIQSDDVSCVFCGEGHVFEKCPSNP 303

[Close]
BLAST of Cla000123 vs. NCBI nr
Match: gi|985447994|ref|XP_015385573.1| (PREDICTED: uncharacterized protein LOC107176925 [Citrus sinensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 1   MDKTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSL 60
           + K+YT+A EIL+RI+ N  +W             R  AG+   DA   LSAQ+ ++T++
Sbjct: 11  LSKSYTEAYEILERIANNNYQW-----PLARQPAVRGSAGVHNIDAITGLSAQVTSLTNM 70

Query: 61  LQTIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDMCPYNP 107
           ++ +A+           A  TV     +SCV CGE H +D CP NP
Sbjct: 71  VKAMAV-----------APATVKQITELSCVYCGEEHDFDNCPGNP 100

[Close]
BLAST of Cla000123 vs. NCBI nr
Match: gi|823155577|ref|XP_012477718.1| (PREDICTED: uncharacterized protein LOC105793346 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 33/106 (31.13%), Postives = 58/106 (54.72%), Query Frame = 1 

Query: 1   MDKTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSL 60
           + K+Y +A EI++RI+ +  +W+ +         RR   G+ E DA  +L++Q+ +++S+
Sbjct: 14  ISKSYNEAYEIIERIASDNYQWLTN-----QATSRRRVVGIHEVDALTSLTSQVYSISSM 73

Query: 61  LQTIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDMCPYNP 107
           L+ +  N     VA        N   ++ CV  GEGHL++ CP NP
Sbjct: 74  LKNLTTNGSNSFVA-----QPPNQFENIDCVYYGEGHLFEECPSNP 109

[Close]
BLAST of Cla000123 vs. NCBI nr
Match: gi|703134353|ref|XP_010105619.1| (hypothetical protein L484_012321 [Morus notabilis])

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1 

Query: 3   KTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSLLQ 62
           K+Y +  EIL+R++ N  +W  +      +  R+T  G++E DA   LSAQ++N+T++ +
Sbjct: 84  KSYNEGYEILERMATNHYQWSPER-----LPTRKTP-GVLEVDAITALSAQVSNLTNMFK 143

Query: 63  TIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDMCPYNP 107
           T  +N   G       +N+V A  ++SCV CGEGH +  CP NP
Sbjct: 144 T--MNTSTG-------VNSVQAL-TLSCVYCGEGHQFKECPSNP 171

[Close]
BLAST of Cla000123 vs. NCBI nr
Match: gi|985466626|ref|XP_015389623.1| (PREDICTED: uncharacterized protein LOC107178680 [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1 

Query: 1   MDKTYTQAKEILDRISRNTDEWVDDGYGFRYMDKRRTQAGMIETDATNNLSAQIANMTSL 60
           + K+YT+A EIL+RI+ N  +W+            R  AG+   DA   LSAQ+ ++T++
Sbjct: 135 LSKSYTEAYEILERIANNNYQWLS-----ARQPIPRGSAGVHSIDAITALSAQVTSLTNM 194

Query: 61  LQTIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDMCPYNP 107
           ++           A   A  TV     +SCV CGE H +D CP NP
Sbjct: 195 VK-----------AMTAAPATVKQVTELSCVHCGEDHDFDNCPGNP 224

The following BLAST results are available for this feature:
BLAST of Cla000123 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC9.2e-0936.36Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
W9RRR5_9ROSA1.7e-0736.54Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1[more]
BLAST of Cla000123 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548830333|gb|ERM93404.1|1.3e-0836.36hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
gi|985447994|ref|XP_015385573.1|1.9e-0734.91PREDICTED: uncharacterized protein LOC107176925 [Citrus sinensis][more]
gi|823155577|ref|XP_012477718.1|1.9e-0731.13PREDICTED: uncharacterized protein LOC105793346 [Gossypium raimondii][more]
gi|703134353|ref|XP_010105619.1|2.5e-0736.54hypothetical protein L484_012321 [Morus notabilis][more]
gi|985466626|ref|XP_015389623.1|4.2e-0734.91PREDICTED: uncharacterized protein LOC107178680 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000123Cla000123.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000123Melon (DHL92) v3.6.1medwmB080
Cla000123Cucumber (Chinese Long) v3cucwmB469
Cla000123Watermelon (97103) v1wmwmB001
Cla000123Cucumber (Gy14) v1cgywmB180
Cla000123Wild cucumber (PI 183967)cpiwmB458
Cla000123Cucumber (Chinese Long) v2cuwmB443