Cla000109 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000109
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 14538092 .. 14538595 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACGCCGTCCGAGTATTGGCGAAGCCTGGGGCAAAGTGGGACGTTTCACCCACAGGAATTAAAACGCTATCTGCTAGCAGCCTACGACCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGCGGCTAATCCCTACGACGCATGACAAAACATTGTCAAGGGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTTAACAAGCCAAGAGGCCAACTCTTTTTCCCCACACTTATTATGAACTTATACGCCAATGCTTCCATTGGAGGGCCTACGGAAGTGTTAGACGCAGAGAAGATGATAGAAATCAGTGGCGTAATCGCCCATAAGACTCTGCGTCGGTTGATGAGGGGATCACAACATTTGCCAGAGCCTGCTAAGGCCATCAAAAGACCTCATCAACCCAGTCCGCCTGTCACACCCTCGCCTCCAAAGCCGAAAACGTAG

mRNA sequence

ATGGAAGACGCCGTCCGAGTATTGGCGAAGCCTGGGGCAAAGTGGGACGTTTCACCCACAGGAATTAAAACGCTATCTGCTAGCAGCCTACGACCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGCGGCTAATCCCTACGACGCATGACAAAACATTGTCAAGGGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTTAACAAGCCAAGAGGCCAACTCTTTTTCCCCACACTTATTATGAACTTATACGCCAATGCTTCCATTGGAGGGCCTACGGAAGTGTTAGACGCAGAGAAGATGATAGAAATCAGTGGCGTAATCGCCCATAAGACTCTGCGTCGGTTGATGAGGGGATCACAACATTTGCCAGAGCCTGCTAAGGCCATCAAAAGACCTCATCAACCCAGTCCGCCTGTCACACCCTCGCCTCCAAAGCCGAAAACGTAG

Coding sequence (CDS)

ATGGAAGACGCCGTCCGAGTATTGGCGAAGCCTGGGGCAAAGTGGGACGTTTCACCCACAGGAATTAAAACGCTATCTGCTAGCAGCCTACGACCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGCGGCTAATCCCTACGACGCATGACAAAACATTGTCAAGGGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTTAACAAGCCAAGAGGCCAACTCTTTTTCCCCACACTTATTATGAACTTATACGCCAATGCTTCCATTGGAGGGCCTACGGAAGTGTTAGACGCAGAGAAGATGATAGAAATCAGTGGCGTAATCGCCCATAAGACTCTGCGTCGGTTGATGAGGGGATCACAACATTTGCCAGAGCCTGCTAAGGCCATCAAAAGACCTCATCAACCCAGTCCGCCTGTCACACCCTCGCCTCCAAAGCCGAAAACGTAG

Protein sequence

MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVMAAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKMIEISGVIAHKTLRRLMRGSQHLPEPAKAIKRPHQPSPPVTPSPPKPKT

Homology

[Close]

BLAST of Cla000109 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = 1


Query: 1   MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
           +++ ++ +A  GA+W +S  G  T +   L+P A +W + +  RL+ +TH KT+SR+R +
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKMI 120
             Y ++   P++VGR+I  QIR    K +G L+FP+LI  L   + +        +E  +
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA----SEPRL 276

Query: 121 EISGVIAHKTLRRLMRGSQHLPEPAKAIKRPHQPSPPVT 160
             +G +    + R+  G     E  +  +   +PS P T
Sbjct: 277 RNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRPST 311

[Close]

BLAST of Cla000109 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 40/138 (28.99%), Postives = 75/138 (54.35%), Query Frame = 1


Query: 1   MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
           +E  +  +A  GA W +SP G  T     L+  A +W + +  R +P+TH KT+++DRV+
Sbjct: 85  LEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVL 144

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGV-FNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKM 120
             Y I+  I +++  I   +I+     + RG L+FP+LI  L+  A++    +    E +
Sbjct: 145 LLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD----EAI 204

Query: 121 IEISGVIAHKTLRRLMRG 138
           +  +G I+  ++ R+ +G
Sbjct: 205 VHNAGAISTLSISRISQG 218

[Close]

BLAST of Cla000109 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 30/101 (29.70%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 1   MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
           +++ +  L   G +W  +  G  T     L+P   +W + ++ RL+P++H + + ++R +
Sbjct: 124 LDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAI 183

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNL 102
             YC+M+  PL+VGR+I  Q+     +  G L+FP+LI  L
Sbjct: 184 LLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQL 224

[Close]

BLAST of Cla000109 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-08
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 1


Query: 36  LWVYLVKKRLIPTTHDKTLSRDRVMAAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFP 95
           +W+ L+KK+++PT H  T+S +RVM  YCIM++I +++G+II+  I  +   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  TLIMNLYANASIGGPTEVLDAEKMIEI-SGVIAHKTLRRLM 136
            LI  L   A +     +L+    +E+  G+    TL R++
Sbjct: 88  YLIEQLCLRACL-----MLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla000109 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
          +E A++ +  P    D++PTG   L   +L  EA +W+  VKK+++PT HD  +S +RVM
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AAYCIMRRIPLDV 74
            YCIM+ I ++V
Sbjct: 78 LVYCIMKEILVEV 90

[Close]

BLAST of Cla000109 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = 1


Query: 1   MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
           +++ ++ +A  GA+W +S  G  T +   L+P A +W + +  RL+ +TH KT+SR+R +
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKMI 120
             Y ++   P++VGR+I  QIR    K +G L+FP+LI  L   + +        +E  +
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA----SEPRL 276

Query: 121 EISGVIAHKTLRRLMRGSQHLPEPAKAIKRPHQPSPPVT 160
             +G +    + R+  G     E  +  +   +PS P T
Sbjct: 277 RNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRPST 311

[Close]

BLAST of Cla000109 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 40/138 (28.99%), Postives = 75/138 (54.35%), Query Frame = 1


Query: 1   MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
           +E  +  +A  GA W +SP G  T     L+  A +W + +  R +P+TH KT+++DRV+
Sbjct: 85  LEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVL 144

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGV-FNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKM 120
             Y I+  I +++  I   +I+     + RG L+FP+LI  L+  A++    +    E +
Sbjct: 145 LLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD----EAI 204

Query: 121 IEISGVIAHKTLRRLMRG 138
           +  +G I+  ++ R+ +G
Sbjct: 205 VHNAGAISTLSISRISQG 218

[Close]

BLAST of Cla000109 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 30/101 (29.70%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 1   MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
           +++ +  L   G +W  +  G  T     L+P   +W + ++ RL+P++H + + ++R +
Sbjct: 124 LDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAI 183

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNL 102
             YC+M+  PL+VGR+I  Q+     +  G L+FP+LI  L
Sbjct: 184 LLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQL 224

[Close]

BLAST of Cla000109 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 1


Query: 36  LWVYLVKKRLIPTTHDKTLSRDRVMAAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFFP 95
           +W+ L+KK+++PT H  T+S +RVM  YCIM++I +++G+II+  I  +   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  TLIMNLYANASIGGPTEVLDAEKMIEI-SGVIAHKTLRRLM 136
            LI  L   A +     +L+    +E+  G+    TL R++
Sbjct: 88  YLIEQLCLRACL-----MLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla000109 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEDAVRVLAKPGAKWDVSPTGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKTLSRDRVM 60
          +E A++ +  P    D++PTG   L   +L  EA +W+  VKK+++PT HD  +S +RVM
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AAYCIMRRIPLDV 74
            YCIM+ I ++V
Sbjct: 78 LVYCIMKEILVEV 90

The following BLAST results are available for this feature:

BLAST of Cla000109 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	1.1e-13	28.93	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9QTD9_9ROSA	1.5e-10	28.99	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
W9S7D3_9ROSA	1.9e-08	29.70	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	9.4e-08	34.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A0A0L2P0_CUCSA	1.2e-07	39.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1	[more]

BLAST of Cla000109 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	1.6e-13	28.93	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	2.2e-10	28.99	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	2.7e-08	29.70	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	1.3e-07	34.65	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|700199714\|gb\|KGN54872.1\|	1.8e-07	39.73	hypothetical protein Csa_4G569710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000109	Cla000109.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla000109	Cla000094	Watermelon (97103) v1	wmwmB000
Cla000109	Cla000583	Watermelon (97103) v1	wmwmB002

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000109	Watermelon (97103) v1	wmwmB001
Cla000109	Watermelon (97103) v1	wmwmB005