Cla000106 (gene) Watermelon (97103) v1

Overview
NameCla000106
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 14525905 .. 14526372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCAGAACCTGCGTCTGTGTATGAAGATACCACTTCTGGACGCGTCCTGATTGACGTCCAAGAAGAAATATCAATGCCCCGTGTGGTTGATCAGGTAAAATTTAATGTAGTTAACGTATTGAAAGAGCCTGATCATTTCCAATCTTGTCAGATGAATGCGGATATCAGTGAGAAGACAAGACCTGTGAACGCAGCGTTGAAAGATGAAATCCTCCAGGACGGTGAAAATGGTGAAGAGGATGTAGTTAATTTACTCTTCGATCGTATAATTGAGCAATCAGACCGGAGCAACAGATCCACGACAAAGGTCGAGCCATTATTAGAAGAGCCTTCAATGCATGAGCTAGAAACCAGACCAACGCATCCCAAGTACGTGCACTTGAGGGAGGTTATAATTGAATTCATTGTCTCCTCTGCGTTGAACCCTGAACGTGACAAAGGCTCCAATGACACGCAAGTGTAA

mRNA sequence

ATGCAGGCAGAACCTGCGTCTGTGTATGAAGATACCACTTCTGGACGCGTCCTGATTGACGTCCAAGAAGAAATATCAATGCCCCGTGTGGTTGATCAGGTAAAATTTAATGTAGTTAACGTATTGAAAGAGCCTGATCATTTCCAATCTTGTCAGATGAATGCGGATATCAGTGAGAAGACAAGACCTGTGAACGCAGCGTTGAAAGATGAAATCCTCCAGGACGGTGAAAATGGTGAAGAGGATGTAGTTAATTTACTCTTCGATCGTATAATTGAGCAATCAGACCGGAGCAACAGATCCACGACAAAGGTCGAGCCATTATTAGAAGAGCCTTCAATGCATGAGCTAGAAACCAGACCAACGCATCCCAAGTACGTGCACTTGAGGGAGGTTATAATTGAATTCATTGTCTCCTCTGCGTTGAACCCTGAACGTGACAAAGGCTCCAATGACACGCAAGTGTAA

Coding sequence (CDS)

ATGCAGGCAGAACCTGCGTCTGTGTATGAAGATACCACTTCTGGACGCGTCCTGATTGACGTCCAAGAAGAAATATCAATGCCCCGTGTGGTTGATCAGGTAAAATTTAATGTAGTTAACGTATTGAAAGAGCCTGATCATTTCCAATCTTGTCAGATGAATGCGGATATCAGTGAGAAGACAAGACCTGTGAACGCAGCGTTGAAAGATGAAATCCTCCAGGACGGTGAAAATGGTGAAGAGGATGTAGTTAATTTACTCTTCGATCGTATAATTGAGCAATCAGACCGGAGCAACAGATCCACGACAAAGGTCGAGCCATTATTAGAAGAGCCTTCAATGCATGAGCTAGAAACCAGACCAACGCATCCCAAGTACGTGCACTTGAGGGAGGTTATAATTGAATTCATTGTCTCCTCTGCGTTGAACCCTGAACGTGACAAAGGCTCCAATGACACGCAAGTGTAA

Protein sequence

MQAEPASVYEDTTSGRVLIDVQEEISMPRVVDQVKFNVVNVLKEPDHFQSCQMNADISEKTRPVNAALKDEILQDGENGEEDVVNLLFDRIIEQSDRSNRSTTKVEPLLEEPSMHELETRPTHPKYVHLREVIIEFIVSSALNPERDKGSNDTQV
Homology
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BLAST of Cla000106 vs. NCBI nr
Match: gi|985438230|ref|XP_015383504.1| (PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 43/156 (27.56%), Postives = 77/156 (49.36%), Query Frame = 1 

Query: 14  SGRVLIDVQE-EISMPRVVDQVKFNVVNVLKEPDHFQSCQ----MNADISEKTRPVNAAL 73
           +G+ LIDVQ+ E++M     QV FNV+  ++ PD  + C     M+  ++++     + +
Sbjct: 439 TGKTLIDVQKGELTMRVNDQQVTFNVLEAMRNPDEIEDCNFLSVMDLVVTDRLDRCCSNV 498

Query: 74  KDEILQDGENGEEDVVNLLFD-----------RIIEQSDRSNRSTTKVEPLLEEPSMHEL 133
            +++    E  EEDV  +  D           R+IE  + S+R      P +E P   EL
Sbjct: 499 LNKVTTFEEVEEEDVAEIQIDWMNKQQSNRHSRVIEHLNLSDREVPTTLPSIESPPSFEL 558

Query: 134 ETRPTHPKYVHL-REVIIEFIVSSALNPERDKGSND 153
           +  P+H KY +L +   +  I+SS L+  +++   D
Sbjct: 559 KLLPSHLKYAYLGQNNTLPVIISSTLDAGQEQSLVD 594

The following BLAST results are available for this feature:
BLAST of Cla000106 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985438230|ref|XP_015383504.1|6.8e-0627.56PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000106Cla000106.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla000106Cla000486Watermelon (97103) v1wmwmB000
The following block(s) are covering this gene:
GeneOrganismBlock
Cla000106Watermelon (97103) v1wmwmB001
Cla000106Watermelon (97103) v1wmwmB002
Cla000106Watermelon (97103) v1wmwmB005