Cla000066 (gene) Watermelon (97103) v1

Overview
NameCla000066
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 2630316 .. 2630513 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCATAGTAGTGGGATTAGGAGGAAATTATGGCGTGTTCTCTGGCGTGCCTTTATATACTTTGTGTGGCAGGAAATGAATCGTTGGTTACATGGTGGTTCGTTTCGAAATCCAGATGTGATCCTACATCTGGTTGTTTCAACTGTGCGTGCTCATGTTATGTCTTGGAGTGATGACCTCTCTGGTGCCTTTTAG

mRNA sequence

ATGGGGCATAGTAGTGGGATTAGGAGGAAATTATGGCGTGTTCTCTGGCGTGCCTTTATATACTTTGTGTGGCAGGAAATGAATCGTTGGTTACATGGTGGTTCGTTTCGAAATCCAGATGTGATCCTACATCTGGTTGTTTCAACTGTGCGTGCTCATGTTATGTCTTGGAGTGATGACCTCTCTGGTGCCTTTTAG

Coding sequence (CDS)

ATGGGGCATAGTAGTGGGATTAGGAGGAAATTATGGCGTGTTCTCTGGCGTGCCTTTATATACTTTGTGTGGCAGGAAATGAATCGTTGGTTACATGGTGGTTCGTTTCGAAATCCAGATGTGATCCTACATCTGGTTGTTTCAACTGTGCGTGCTCATGTTATGTCTTGGAGTGATGACCTCTCTGGTGCCTTTTAG

Protein sequence

MGHSSGIRRKLWRVLWRAFIYFVWQEMNRWLHGGSFRNPDVILHLVVSTVRAHVMSWSDDLSGAF
Homology
[Close]
BLAST of Cla000066 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 2   GHSSGIRRKLWRVLWRAFIYFVWQEMNRWLHGGSFRNPDVILHLVVSTVRAHVMSWSDD 61
           G   G+RRKLWRVLW A IYF+W E N  LHGG   +P VI HL+ + +RA   SW +D
Sbjct: 892 GIRKGVRRKLWRVLWCATIYFIWNERNHRLHGGQAPDPIVIFHLICTWIRARAGSWRED 950

[Close]
BLAST of Cla000066 vs. NCBI nr
Match: gi|778730244|ref|XP_011659736.1| (PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 6   GIRRKLWRVLWRAFIYFVWQEMNRWLHGGSFRNPDVILHLVVSTVRAHVMSWSDDLSG 64
           G+R+KLWR+LW A IYF+WQ+ N  LHGG+   P VI  L+ S +RA   SWS  + G
Sbjct: 279 GVRKKLWRLLWCATIYFIWQKRNHQLHGGAVCEPMVIFQLIRSCIRACAASWSGGVHG 336

The following BLAST results are available for this feature:
BLAST of Cla000066 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102432|ref|XP_008452126.1|1.5e-1054.24PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
gi|778730244|ref|XP_011659736.1|3.6e-0951.72PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000066Cla000066.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000066Melon (DHL92) v3.6.1medwmB080
Cla000066Cucumber (Chinese Long) v3cucwmB469
Cla000066Watermelon (97103) v1wmwmB001
Cla000066Cucumber (Gy14) v1cgywmB180
Cla000066Wild cucumber (PI 183967)cpiwmB458
Cla000066Cucumber (Chinese Long) v2cuwmB443