Cla000025 (gene) Watermelon (97103) v1

Overview
NameCla000025
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 4244640 .. 4245386 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACGCAATCCGAGTATTGGCGAAGCCCGGGGCGAAATGGGACGTTTCACCCATAGGCATTAAAACGTTGTCTGCTAACAGCCTACAACCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGTGGCTAATCCCTATGACGCATGACAAAACAGTGTCAAGTGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATTGCAGCGCAAATAAGAGGGGTGTTTAACAAGCCAAGAGGCCAACTCTTTTTACCCAGACTTATCATGAACCTATACGCCAATGCTAACATCGGAGGACAAACAGAAGTGTTAGACGCAAAGAAGATGATCGAAGTCAGTGGCGTAATCGCCTATAAGACTCTGCGTCGGTTGATAAGGGGATCACAACATTTGCCAGAGCCTGCTAAGACCACCAAAAGACCTCATCAACCCACTCCGACACCTAAAGTGTCGCCTCTAGAGCCGAAAATGCAGAAGAAGGGGAAGTCATCCAAACTAAAACGCAAGGCTGTGGCAAGTCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCTCTTCACCCCCAATTCCAACAACTAGAAGAGAACCAACTCCACCTCCACCGCCTCCTGAGACGCATCGCCCTCAGCCACTCCACCTTCTCCTAAAACGCATCGCCCAAAACTTTCTAAACCTCAACCTTCCGCAAAACCCACCTCCTCAATCACCTCAATAA

mRNA sequence

ATGGAAGACGCAATCCGAGTATTGGCGAAGCCCGGGGCGAAATGGGACGTTTCACCCATAGGCATTAAAACGTTGTCTGCTAACAGCCTACAACCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGTGGCTAATCCCTATGACGCATGACAAAACAGTGTCAAGTGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATTGCAGCGCAAATAAGAGGGGTGTTTAACAAGCCAAGAGGCCAACTCTTTTTACCCAGACTTATCATGAACCTATACGCCAATGCTAACATCGGAGGACAAACAGAAGTGTTAGACGCAAAGAAGATGATCGAAGTCAGTGGCGTAATCGCCTATAAGACTCTGCGTCGGTTGATAAGGGGATCACAACATTTGCCAGAGCCTGCTAAGACCACCAAAAGACCTCATCAACCCACTCCGACACCTAAAGTGTCGCCTCTAGAGCCGAAAATGCAGAAGAAGGGGAAGTCATCCAAACTAAAACGCAAGGCTGTGGCAAGTCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCTCTTCACCCCCAATTCCAACAACTAGAAGAGAACCAACTCCACCTCCACCGCCTCCTGAGACGCATCGCCCTCAGCCACTCCACCTTCTCCTAAAACGCATCGCCCAAAACTTTCTAAACCTCAACCTTCCGCAAAACCCACCTCCTCAATCACCTCAATAA

Coding sequence (CDS)

ATGGAAGACGCAATCCGAGTATTGGCGAAGCCCGGGGCGAAATGGGACGTTTCACCCATAGGCATTAAAACGTTGTCTGCTAACAGCCTACAACCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGTGGCTAATCCCTATGACGCATGACAAAACAGTGTCAAGTGATCGGGTGATGGCAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGGACGCATAATTGCAGCGCAAATAAGAGGGGTGTTTAACAAGCCAAGAGGCCAACTCTTTTTACCCAGACTTATCATGAACCTATACGCCAATGCTAACATCGGAGGACAAACAGAAGTGTTAGACGCAAAGAAGATGATCGAAGTCAGTGGCGTAATCGCCTATAAGACTCTGCGTCGGTTGATAAGGGGATCACAACATTTGCCAGAGCCTGCTAAGACCACCAAAAGACCTCATCAACCCACTCCGACACCTAAAGTGTCGCCTCTAGAGCCGAAAATGCAGAAGAAGGGGAAGTCATCCAAACTAAAACGCAAGGCTGTGGCAAGTCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCTCTTCACCCCCAATTCCAACAACTAGAAGAGAACCAACTCCACCTCCACCGCCTCCTGAGACGCATCGCCCTCAGCCACTCCACCTTCTCCTAAAACGCATCGCCCAAAACTTTCTAAACCTCAACCTTCCGCAAAACCCACCTCCTCAATCACCTCAATAA

Protein sequence

MEDAIRVLAKPGAKWDVSPIGIKTLSANSLQPEANLWVYLVKKWLIPMTHDKTVSSDRVMAAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFLPRLIMNLYANANIGGQTEVLDAKKMIEVSGVIAYKTLRRLIRGSQHLPEPAKTTKRPHQPTPTPKVSPLEPKMQKKGKSSKLKRKAVASPDATIRPSPTSSSSPPIPTTRREPTPPPPPPETHRPQPLHLLLKRIAQNFLNLNLPQNPPPQSPQ
Homology
[Close]
BLAST of Cla000025 vs. TAIR10
Match: AT1G44191.1 (AT1G44191.1 ECA1 gametogenesis related family protein)

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-07
Identity = 28/83 (33.73%), Postives = 38/83 (45.78%), Query Frame = 1 

Query: 142 PEPAKTTKRPHQPTPTPKVSPLEPK-MQKKGKSSKLKRKAVASPDATIRPSPTSSSSPPI 201
           P+P+ +  +P  P PTPK SP  PK  Q   K S  +RK            P+   SPP 
Sbjct: 208 PKPSPSPPKPSTPPPTPKKSPPPPKPSQPPPKPSPPRRKPSPPTPKPSTTPPSPKPSPPR 267

Query: 202 PTTRREPTPPPPPPETHRPQPLH 224
           PT ++ P PP  P  +++   +H
Sbjct: 268 PTPKKSPPPPTTPSPSYQDPWVH 290

[Close]
BLAST of Cla000025 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 40/155 (25.81%), Postives = 79/155 (50.97%), Query Frame = 1 

Query: 1   MEDAIRVLAKPGAKWDVSPIGIKTLSANSLQPEANLWVYLVKKWLIPMTHDKTVSSDRVM 60
           +++ ++ +A  GA+W +S  G  T + + LQP A +W + +   L+  TH KT+S +R +
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  AAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFLPRLIMNLYANANIGGQTEVLDAKKMI 120
             Y ++   P++VGR+I  QIR    K +G L+ P LI  L   +++  +     ++  +
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA----SEPRL 276

Query: 121 EVSGVIAYKTLRRLIRGSQHLPEPAKTTKRPHQPT 156
             +G +    + R+  G     E  +  +   +P+
Sbjct: 277 RNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPS 307

[Close]
BLAST of Cla000025 vs. NCBI nr
Match: gi|522043044|ref|WP_020554253.1| (hypothetical protein [Streptomyces scabrisporus])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 34/87 (39.08%), Postives = 43/87 (49.43%), Query Frame = 1 

Query: 141 LPEPAKTTKRPHQPTPTPKVSPLEPKMQKKGKSSKLKRKAVASPDATIRPSPTSSSSPPI 200
           +PEPA+     H PTPTP  +P EP    +  +S    +  A P  T  P PT    PP 
Sbjct: 253 VPEPAEPPASTHLPTPTPTPTPPEPTAPPQPTASP---EPTAPPQPTAPPEPTP---PPQ 312

Query: 201 PTTRREPTPPPPPPETHRPQPLHLLLK 228
           PT   EPTPPP P     P P  +L++
Sbjct: 313 PTAPPEPTPPPQPTAPPEPSPPPVLVE 333

[Close]
BLAST of Cla000025 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 8.4e-06
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1 

Query: 36  LWVYLVKKWLIPMTHDKTVSSDRVMAAYCIMRRIPLDVGRIIAAQIRGVFNKPRGQLFLP 95
           +W+ L+KK ++P  H  T+S +RVM  YCIM++I +++G+II+  I  +   PRG     
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  RLIMNLYANANIGGQTEVLDAKKMIEV-SGVIAYKTLRRLI 136
            LI  L   A +     +L+    +EV  G+    TL R+I
Sbjct: 88  YLIEQLCLRACL-----MLEKLPQVEVKDGIWLPSTLHRII 123

[Close]
BLAST of Cla000025 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 8.4e-06
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 1  MEDAIRVLAKPGAKWDVSPIGIKTLSANSLQPEANLWVYLVKKWLIPMTHDKTVSSDRVM 60
          +E A++ +  P    D++P G   L  ++L  EA +W+  VKK ++P  HD  +S +RVM
Sbjct: 18 LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61 AAYCIMRRIPLDV 74
            YCIM+ I ++V
Sbjct: 78 LVYCIMKEILVEV 90

The following BLAST results are available for this feature:
BLAST of Cla000025 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G44191.14.7e-0733.73 ECA1 gametogenesis related family protein[more]
BLAST of Cla000025 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703082781|ref|XP_010092041.1|1.9e-1025.81hypothetical protein L484_000844 [Morus notabilis][more]
gi|522043044|ref|WP_020554253.1|6.4e-0639.08hypothetical protein [Streptomyces scabrisporus][more]
gi|700202594|gb|KGN57727.1|8.4e-0634.65hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|700199714|gb|KGN54872.1|8.4e-0636.99hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000025Cla000025.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000025Watermelon (97103) v1wmwmB000
Cla000025Watermelon (97103) v1wmwmB001