Cla000006 (gene) Watermelon (97103) v1

Overview
NameCla000006
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPolygalacturonase (AHRD V1 ***- E3VSV7_CUCPE); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
LocationChr0 : 6029352 .. 6029806 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTATGAAGATATAATTATGGTCAACGTCAGCAATCCAGTTCTCATAGATCAAGAGTATTGTCCATACAACCAATGTAATAAAAAGGTACTAAAGTTATTAAGCTTTTTTTTTTTTTTCTTTTTTTTCAAAAAGTCGATTTATAATATTTAAATTAAAGTTACCAAACCATATCCTATGTTCTTGCCTTTCAGAGTCCATCAAGAGTGAAGATTAGCAAGGTTAGTTTCAAGAATATCAGAGGTACTTCAGGTAATGCGCTCGCAGTCAAACTTGTATGTAGTTCCGAGCATCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACATATAGTGGAAGTGAAGGTCCAATTACATCTCAGTGTTTAAATGTGAAGCCCACCATTTCTGGAAAGCAAAACCCTCCTGCTTGTTCTTCTCTTTCCCCTAGTGCATCTCCACCAGCTTAA

mRNA sequence

ATGCACTATGAAGATATAATTATGGTCAACGTCAGCAATCCAGTTCTCATAGATCAAGAGTATTGTCCATACAACCAATGTAATAAAAAGAGTCCATCAAGAGTGAAGATTAGCAAGGTTAGTTTCAAGAATATCAGAGGTACTTCAGGTAATGCGCTCGCAGTCAAACTTGTATGTAGTTCCGAGCATCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACATATAGTGGAAGTGAAGGTCCAATTACATCTCAGTGTTTAAATGTGAAGCCCACCATTTCTGGAAAGCAAAACCCTCCTGCTTGTTCTTCTCTTTCCCCTAGTGCATCTCCACCAGCTTAA

Coding sequence (CDS)

ATGCACTATGAAGATATAATTATGGTCAACGTCAGCAATCCAGTTCTCATAGATCAAGAGTATTGTCCATACAACCAATGTAATAAAAAGAGTCCATCAAGAGTGAAGATTAGCAAGGTTAGTTTCAAGAATATCAGAGGTACTTCAGGTAATGCGCTCGCAGTCAAACTTGTATGTAGTTCCGAGCATCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACATATAGTGGAAGTGAAGGTCCAATTACATCTCAGTGTTTAAATGTGAAGCCCACCATTTCTGGAAAGCAAAACCCTCCTGCTTGTTCTTCTCTTTCCCCTAGTGCATCTCCACCAGCTTAA

Protein sequence

MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCSSEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASPPA
Homology
[Close]
BLAST of Cla000006 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.6e-36
Identity = 69/112 (61.61%), Postives = 87/112 (77.68%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+EDII+ NVSNPV+IDQ YCP+N+CNK  PS+VKISKVSF+NI+GTS    AV L+ S
Sbjct: 285 VHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRS 344

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSAS 113
              PCEG+E+ DID+TYSG EGP  S C N+KP++ GKQNPP C++ + S+S
Sbjct: 345 KGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVCTASAASSS 396

[Close]
BLAST of Cla000006 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-35
Identity = 71/112 (63.39%), Postives = 80/112 (71.43%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH++DI M +V  P+LIDQ YCPYNQC  + PS VK+SK+SFKNI+GTS    AVKLVCS
Sbjct: 251 MHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCS 310

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSAS 113
              PC GVELADIDLTYSG  GP TS C N+KPTI GKQ P  CS  +  A+
Sbjct: 311 KSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAICSGSAAKAA 362

[Close]
BLAST of Cla000006 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+EDII+  VSNP+LIDQEYCP+NQCNK  PS +K+  ++F+NIRGTS N  AVKL+CS
Sbjct: 283 IHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKLLCS 342

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPAC 105
             HPCE VE+ DI++ Y+G +GP T +C NV P + G QNP AC
Sbjct: 343 KGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQNPKAC 386

[Close]
BLAST of Cla000006 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-32
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+EDI M NVS+P+LIDQ+YCP+N+C K   S+VK+S +SFKNIRGTS    A+K +CS
Sbjct: 293 IHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICS 352

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSP 110
              PC+ VELADID+ ++G+E P TSQCLNVKP  SGK NP  CS   P
Sbjct: 353 GSSPCQNVELADIDIKHNGAE-PATSQCLNVKPITSGKLNPIPCSGPVP 400

[Close]
BLAST of Cla000006 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-32
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+EDI M NVS+P+LIDQ+YCP+N+C K   S+VK+S +SFKNIRGTS    A+K +CS
Sbjct: 293 IHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICS 352

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSP 110
              PC+ VELADID+ ++G+E P TSQCLNVKP   GK NP  CS   P
Sbjct: 353 GSSPCQNVELADIDIQHNGAE-PATSQCLNVKPITIGKLNPIPCSGPVP 400

[Close]
BLAST of Cla000006 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-42
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+EDI M NV+NP++IDQEYCP+NQCN+K PS +KISKVSFKNIRGTS   +AVKLVCS
Sbjct: 300 MHFEDIEMENVANPIIIDQEYCPWNQCNRKVPSAIKISKVSFKNIRGTSSTPVAVKLVCS 359

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASPPA 116
             +PCEGVE+ADIDLTYSG EGP  S+C NVKPTISGKQNPP C+  +P  + P+
Sbjct: 360 KSNPCEGVEIADIDLTYSGKEGPAVSECSNVKPTISGKQNPPICAKPAPPETTPS 414

[Close]
BLAST of Cla000006 vs. TrEMBL
Match: W9SBW1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020040 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-39
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+EDI+M NV NPVLIDQEYCP+NQCN K PSR+KIS VSFKNIRGTS  ALAV LVCS
Sbjct: 289 LHFEDIVMENVGNPVLIDQEYCPWNQCNAKVPSRIKISDVSFKNIRGTSTTALAVNLVCS 348

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSS 107
           S  PC+ VE+ADIDL YSG++GPI SQC NVKPTISGKQNP  C++
Sbjct: 349 SGFPCQNVEIADIDLQYSGNDGPIMSQCKNVKPTISGKQNPNPCAT 394

[Close]
BLAST of Cla000006 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+ DI MVNVSNP+LIDQEYCP+NQCN++ PS +KI+KVSFKNIRG+S   +AVKL+CS
Sbjct: 292 MHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSATPVAVKLICS 351

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSAS 113
           S  PCE V++A+IDL Y+G +G ITS+C+NVKP ISG QNPP CSS   +AS
Sbjct: 352 SNLPCEEVKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSSSYTTAS 403

[Close]
BLAST of Cla000006 vs. TrEMBL
Match: A0A061FNR4_THECC (Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_043174 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-37
Identity = 76/104 (73.08%), Postives = 88/104 (84.62%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+EDI+MVNVSNPVLIDQEYCP N+CN K+PSRVKIS VSFKNIRGTS   +AVKL CS
Sbjct: 293 MHFEDIVMVNVSNPVLIDQEYCPSNKCNLKAPSRVKISNVSFKNIRGTSATQVAVKLACS 352

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPAC 105
           S  PCE VE+ DI+L+Y G++GP TSQC NVKPTI+G+Q P AC
Sbjct: 353 SGIPCENVEIGDINLSYIGTKGPATSQCSNVKPTIAGRQTPLAC 396

[Close]
BLAST of Cla000006 vs. TrEMBL
Match: A0A0D2SES0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G167600 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-37
Identity = 73/119 (61.34%), Postives = 94/119 (78.99%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+EDI M NVSNP++IDQ+YCP+N C+ K+PSR+K+S +SFKNIRGT+    AVK++CS
Sbjct: 312 MHFEDITMDNVSNPIIIDQQYCPWNLCDLKNPSRIKLSNISFKNIRGTAAGKEAVKIICS 371

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPS-----ASPP 115
           +  PCEGVELADIDLTY+G +GP  SQC NV P +SGKQNPP C++ +P+     A PP
Sbjct: 372 AGFPCEGVELADIDLTYTGPDGPAISQCSNVSPKLSGKQNPPICAAPAPTSPGGQAGPP 430

[Close]
BLAST of Cla000006 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-36
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+E+I++ NVSNP+LIDQEYCP+NQCNK+ PS +K++ +SFK IRGTSGN  AVKL+CS
Sbjct: 283 IHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCS 342

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASPP 115
             +PC+ VE+ D+++ Y+G++GP T QC NV P + G Q P ACS  SP   PP
Sbjct: 343 KGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKACS--SPVTKPP 394

[Close]
BLAST of Cla000006 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-36
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+E+II+ NVSNP+LIDQEYCP+NQCNK+ PS +K+  +SFKNIRGTSGN  AVKL+CS
Sbjct: 284 IHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCS 343

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSS 107
             HPC  VE+ +I+L Y G++GP T  C NV P + G QNP ACS+
Sbjct: 344 KAHPCANVEIGNINLEYKGADGPPTFMCSNVSPKLVGTQNPKACSA 389

[Close]
BLAST of Cla000006 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 3.8e-36
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+EDII+ +VSNP+LIDQEYCP+NQCNK+  S +K+  +SFKNIRGTSGN  AVKL+CS
Sbjct: 283 IHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCS 342

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSS 107
             +PC+ VE+ DID+ Y+G++GP T  C NV P I G Q+P ACS+
Sbjct: 343 KGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKACSA 388

[Close]
BLAST of Cla000006 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-33
Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           +H+E+II+ NVSNP+LIDQEYCP+NQCNK+  S +K++ +SF+ IRGTSGN  AVKL+CS
Sbjct: 284 IHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCS 343

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSS 107
             +PCE V++ DI++ Y+G++GP T  C NV+P + G Q P AC++
Sbjct: 344 KGYPCENVQVGDINIQYTGADGPATFMCSNVRPKLVGTQFPKACNT 389

[Close]
BLAST of Cla000006 vs. TAIR10
Match: AT3G14040.1 (AT3G14040.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-29
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1 

Query: 3   YEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCSSE 62
           +EDI M NVS PVLIDQEYCPY  C    PS+VK+S V+ KNI+GTS   +AVKL+CS  
Sbjct: 336 FEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKG 395

Query: 63  HPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLS 109
            PC  + L+DI+L ++G EGP  S C N+KP +SGK  P AC+ ++
Sbjct: 396 VPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACTEVA 441

[Close]
BLAST of Cla000006 vs. NCBI nr
Match: gi|778708790|ref|XP_011656283.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.1e-48
Identity = 92/115 (80.00%), Postives = 103/115 (89.57%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MHYEDI+M NVSNP++IDQEYCPYN+CNK+ PS+VKISKVSFKNIRGTSGNA AV LVCS
Sbjct: 248 MHYEDIVMNNVSNPIMIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNAQAVTLVCS 307

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASPPA 116
           S +PCEGVELADIDLTY+G+EGPITS C NVKPTI+GKQNPP CS L+P A  PA
Sbjct: 308 SSNPCEGVELADIDLTYTGNEGPITSVCANVKPTITGKQNPPICSPLAPKAQSPA 362

[Close]
BLAST of Cla000006 vs. NCBI nr
Match: gi|659119537|ref|XP_008459709.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 5.9e-47
Identity = 89/106 (83.96%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MHYED++M NV NP+LIDQEYCPYNQCNK+ PS+VKISKVSFKNIRGTSGNA AV LVCS
Sbjct: 314 MHYEDVVMNNVMNPILIDQEYCPYNQCNKQVPSKVKISKVSFKNIRGTSGNAAAVTLVCS 373

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSS 107
           S +PC+GVELADIDLTYSGSEGPITS+C NVKPT+SGKQNPPAC+S
Sbjct: 374 SSNPCDGVELADIDLTYSGSEGPITSRCANVKPTVSGKQNPPACTS 419

[Close]
BLAST of Cla000006 vs. NCBI nr
Match: gi|659097567|ref|XP_008449696.1| (PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.3e-45
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+EDI MVNVSNPVLIDQEYCP+NQCN+K PS++KISKVSFKNIRGTS   +AVKLVCS
Sbjct: 289 MHFEDIEMVNVSNPVLIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCS 348

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASP 114
             +PCEGVE+ADIDLTYSGSEGPI SQC NVKP ISGKQNPP C+  +P+  P
Sbjct: 349 QSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGP 401

[Close]
BLAST of Cla000006 vs. NCBI nr
Match: gi|659097569|ref|XP_008449697.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.3e-45
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+EDI MVNVSNPVLIDQEYCP+NQCN+K PS++KISKVSFKNIRGTS   +AVKLVCS
Sbjct: 288 MHFEDIEMVNVSNPVLIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCS 347

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASP 114
             +PCEGVE+ADIDLTYSGSEGPI SQC NVKP ISGKQNPP C+  +P+  P
Sbjct: 348 QSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGP 400

[Close]
BLAST of Cla000006 vs. NCBI nr
Match: gi|659098032|ref|XP_008449943.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.3e-45
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 1 

Query: 1   MHYEDIIMVNVSNPVLIDQEYCPYNQCNKKSPSRVKISKVSFKNIRGTSGNALAVKLVCS 60
           MH+EDI MVNVSNPVLIDQEYCP+NQCN+K PS++KISKVSFKNIRGTS   +AVKLVCS
Sbjct: 34  MHFEDIEMVNVSNPVLIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCS 93

Query: 61  SEHPCEGVELADIDLTYSGSEGPITSQCLNVKPTISGKQNPPACSSLSPSASP 114
             +PCEGVE+ADIDLTYSGSEGPI SQC NVKP ISGKQNPP C+  +P+  P
Sbjct: 94  QSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEPAPAGGP 146

The following BLAST results are available for this feature:
BLAST of Cla000006 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_TOBAC3.6e-3661.61Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR_OENOR1.0e-3563.39Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_BRANA1.3e-3359.62Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR_GOSHI1.1e-3259.63Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
PGLR_GOSBA5.4e-3258.72Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
BLAST of Cla000006 vs. TrEMBL
Match NameE-valueIdentityDescription
E3VSV7_CUCPE1.4e-4270.43Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1[more]
W9SBW1_9ROSA1.4e-3974.53Uncharacterized protein OS=Morus notabilis GN=L484_020040 PE=3 SV=1[more]
A0A0A0K3B7_CUCSA1.3e-3766.96Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1[more]
A0A061FNR4_THECC1.7e-3773.08Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_043174... [more]
A0A0D2SES0_GOSRA2.3e-3761.34Uncharacterized protein OS=Gossypium raimondii GN=B456_007G167600 PE=3 SV=1[more]
BLAST of Cla000006 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48140.11.7e-3657.02 Pectin lyase-like superfamily protein[more]
AT3G07840.12.9e-3661.32 Pectin lyase-like superfamily protein[more]
AT3G07820.13.8e-3660.38 Pectin lyase-like superfamily protein[more]
AT3G07830.11.0e-3355.66 Pectin lyase-like superfamily protein[more]
AT3G14040.11.2e-2954.72 Pectin lyase-like superfamily protein[more]
BLAST of Cla000006 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708790|ref|XP_011656283.1|4.1e-4880.00PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|659119537|ref|XP_008459709.1|5.9e-4783.96PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|659097567|ref|XP_008449696.1|4.3e-4576.99PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo][more]
gi|659097569|ref|XP_008449697.1|4.3e-4576.99PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|659098032|ref|XP_008449943.1|4.3e-4576.99PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0016829 lyase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000006Cla000006.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 2..94
score: 2.4
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..105
score: 5.97
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 2..107
score: 2.0
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..106
score: 2.3
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..106
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla000006Watermelon (97103) v1wmwmB000
Cla000006Watermelon (97103) v1wmwmB001