Cla000001 (gene) Watermelon (97103) v1

Overview
NameCla000001
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 13595835 .. 13596290 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACGCCTATAGAAGCCAAAATGAATGACGCCCTCACAACCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAAACATTGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTCACTTCATCAAGCGATCGCTAATCCCCACAACGCATGACGCCTTAATTTCAAGAGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGACTAGACGTGGGACGCATCATTGCCCCACAAATTTGGGGGTTGTTTTTCAAGCCAAGGGGTCTGTCACACCCTCTCCCGGATTATCCTCCAAAACCCGAGAGGAGATGTGAAGACAGCAACCTTGACTCCTCTATAAGGTTCACTGTCCAACCGAGCAGTAAATGGAGTCCTTTTAGCCGAAAGTCTCAGATGGATATTAAAGGACTCCCCGCATCTGCTTAA

mRNA sequence

ATGACGACGCCTATAGAAGCCAAAATGAATGACGCCCTCACAACCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAAACATTGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTCACTTCATCAAGCGATCGCTAATCCCCACAACGCATGACGCCTTAATTTCAAGAGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGACTAGACGTGGGACGCATCATTGCCCCACAAATTTGGGGGTTGTTTTTCAAGCCAAGGGGTCTGTCACACCCTCTCCCGGATTATCCTCCAAAACCCGAGAGGAGATGTGAAGACAGCAACCTTGACTCCTCTATAAGGTTCACTGTCCAACCGAGCAGTAAATGGAGTCCTTTTAGCCGAAAGTCTCAGATGGATATTAAAGGACTCCCCGCATCTGCTTAA

Coding sequence (CDS)

ATGACGACGCCTATAGAAGCCAAAATGAATGACGCCCTCACAACCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAAACATTGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTCACTTCATCAAGCGATCGCTAATCCCCACAACGCATGACGCCTTAATTTCAAGAGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGACTAGACGTGGGACGCATCATTGCCCCACAAATTTGGGGGTTGTTTTTCAAGCCAAGGGGTCTGTCACACCCTCTCCCGGATTATCCTCCAAAACCCGAGAGGAGATGTGAAGACAGCAACCTTGACTCCTCTATAAGGTTCACTGTCCAACCGAGCAGTAAATGGAGTCCTTTTAGCCGAAAGTCTCAGATGGATATTAAAGGACTCCCCGCATCTGCTTAA

Protein sequence

MTTPIEAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRDRAMVIYCIMRGIRLDVGRIIAPQIWGLFFKPRGLSHPLPDYPPKPERRCEDSNLDSSIRFTVQPSSKWSPFSRKSQMDIKGLPASA
Homology
[Close]
BLAST of Cla000001 vs. TrEMBL
Match: W9RK06_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 27/84 (32.14%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 6   EAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRD 65
           E ++++ +  +   G+EW  + +G  T    CL   + +W HF++  L+P++H  L+ ++
Sbjct: 144 EDQLDEVINELCVEGTEWRRATRGSMTFPRECLQPGSKIWYHFLRFRLMPSSHYRLVHKE 203

Query: 66  RAMVIYCIMRGIRLDVGRIIAPQI 90
           RA+++YC+M+G  L+VGR+I  Q+
Sbjct: 204 RAILLYCMMKGRPLNVGRMIRQQL 227

[Close]
BLAST of Cla000001 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 27/84 (32.14%), Postives = 53/84 (63.10%), Query Frame = 1 

Query: 6   EAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRD 65
           E ++++ +  +   G+EW  + +G  T    CL     +W HF++  L+P++H  L+ ++
Sbjct: 121 EDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKE 180

Query: 66  RAMVIYCIMRGIRLDVGRIIAPQI 90
           RA+++YC+M+G  L+VGR+I  Q+
Sbjct: 181 RAILLYCMMKGRPLNVGRMIRQQV 204

[Close]
BLAST of Cla000001 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 1   MTTPIEAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDA 60
           +T  IE ++ + L TIA  G++W  S KG  T     L   A +W HF+   L+ +TH  
Sbjct: 149 ITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGK 208

Query: 61  LISRDRAMVIYCIMRGIRLDVGRIIAPQIWGLFFKPRG 99
            ISR+RA+++Y ++ G  ++VGR+I  QI     K +G
Sbjct: 209 TISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGKG 246

[Close]
BLAST of Cla000001 vs. TrEMBL
Match: A0A061FAJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 26/80 (32.50%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 10  NDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRDRAMV 69
           N+ ++T+   G++W TS     +   + +  E  +WLHF+   L+P+TH + +++DRA++
Sbjct: 131 NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAVL 190

Query: 70  IYCIMRGIRLDVGRIIAPQI 90
           IY I+    +DVG++I+  I
Sbjct: 191 IYAIVTHKSIDVGKVISHAI 210

[Close]
BLAST of Cla000001 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-06
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 1  MTTPIEAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDA 60
          +  P    +  AL  +  P +  + +P G   L P  L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 LISRDRAMVIYCIMRGIRLDV 82
           IS +R M++YCIM+ I ++V
Sbjct: 70 NISMERVMLVYCIMKEILVEV 90

[Close]
BLAST of Cla000001 vs. NCBI nr
Match: gi|703109223|ref|XP_010099236.1| (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 27/84 (32.14%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 6   EAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRD 65
           E ++++ +  +   G+EW  + +G  T    CL   + +W HF++  L+P++H  L+ ++
Sbjct: 144 EDQLDEVINELCVEGTEWRRATRGSMTFPRECLQPGSKIWYHFLRFRLMPSSHYRLVHKE 203

Query: 66  RAMVIYCIMRGIRLDVGRIIAPQI 90
           RA+++YC+M+G  L+VGR+I  Q+
Sbjct: 204 RAILLYCMMKGRPLNVGRMIRQQL 227

[Close]
BLAST of Cla000001 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 27/84 (32.14%), Postives = 53/84 (63.10%), Query Frame = 1 

Query: 6   EAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRD 65
           E ++++ +  +   G+EW  + +G  T    CL     +W HF++  L+P++H  L+ ++
Sbjct: 121 EDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKE 180

Query: 66  RAMVIYCIMRGIRLDVGRIIAPQI 90
           RA+++YC+M+G  L+VGR+I  Q+
Sbjct: 181 RAILLYCMMKGRPLNVGRMIRQQV 204

[Close]
BLAST of Cla000001 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 65.9 bits (159), Expect = 7.1e-08
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 1   MTTPIEAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDA 60
           +T  IE ++ + L TIA  G++W  S KG  T     L   A +W HF+   L+ +TH  
Sbjct: 149 ITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGK 208

Query: 61  LISRDRAMVIYCIMRGIRLDVGRIIAPQIWGLFFKPRG 99
            ISR+RA+++Y ++ G  ++VGR+I  QI     K +G
Sbjct: 209 TISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGKG 246

[Close]
BLAST of Cla000001 vs. NCBI nr
Match: gi|590612524|ref|XP_007022408.1| (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-06
Identity = 26/80 (32.50%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 10  NDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDALISRDRAMV 69
           N+ ++T+   G++W TS     +   + +  E  +WLHF+   L+P+TH + +++DRA++
Sbjct: 131 NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAVL 190

Query: 70  IYCIMRGIRLDVGRIIAPQI 90
           IY I+    +DVG++I+  I
Sbjct: 191 IYAIVTHKSIDVGKVISHAI 210

[Close]
BLAST of Cla000001 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-06
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 1  MTTPIEAKMNDALTTIAKPGSEWNTSPKGIQTLAPTCLIAEANLWLHFIKRSLIPTTHDA 60
          +  P    +  AL  +  P +  + +P G   L P  L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 LISRDRAMVIYCIMRGIRLDV 82
           IS +R M++YCIM+ I ++V
Sbjct: 70 NISMERVMLVYCIMKEILVEV 90

The following BLAST results are available for this feature:
BLAST of Cla000001 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RK06_9ROSA4.5e-0932.14Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1[more]
W9S7D3_9ROSA1.3e-0832.14Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1[more]
W9RBS1_9ROSA5.0e-0836.73Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
A0A061FAJ6_THECC3.6e-0632.50Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1[more]
A0A0A0L2P0_CUCSA4.6e-0635.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
BLAST of Cla000001 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703109223|ref|XP_010099236.1|6.4e-0932.14hypothetical protein L484_000483 [Morus notabilis][more]
gi|703121924|ref|XP_010102456.1|1.9e-0832.14hypothetical protein L484_006967 [Morus notabilis][more]
gi|703082781|ref|XP_010092041.1|7.1e-0836.73hypothetical protein L484_000844 [Morus notabilis][more]
gi|590612524|ref|XP_007022408.1|5.1e-0632.50Uncharacterized protein TCM_032752 [Theobroma cacao][more]
gi|700199714|gb|KGN54872.1|6.7e-0635.80hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla000001Cla000001.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla000001Cla000277Watermelon (97103) v1wmwmB002
The following block(s) are covering this gene:
GeneOrganismBlock
Cla000001Watermelon (97103) v1wmwmB000
Cla000001Watermelon (97103) v1wmwmB001
Cla000001Watermelon (97103) v1wmwmB005