ClCG11G016440 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G016440
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Hydroxyproline-rich glycoprotein
Location	CG_Chr11 : 29716621 .. 29717971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAAACAAAGAGAATATCACAAAAGGTAAGCAGTGGATGCAAATCATTGCTATACAAATGCACAACGGAAGGAAATATTAATACAAACAAAATTCATATGTCAGTTTTTTAATAGTCAATGATAAAATTTACAGCTGCAGGATAATTAAAGGTAATAGAACATTGTTTATCACAATCGAGTTCAACAAGGGCAAATCACAATTAAAATTTGAAATCAATGCAATAGTTACACCACAGGTCTGAAGAAGTATTGAATTCAAAGATTTTCTTCTGTTTCCATAAATAGTTAATGAATGTAAACTGAACCCTGTTTTAACTGAATAAACGATAATGAGCTCACTTAATAAAATTAAATAACAAATTACATCCGAAACCAAGTTTATAACTCGGCATATGGTGTTAATCCATTCACCGCATGTCCAAAACGAAACATCGCAGTTGAACGGAGATAAACGAAATACTATAAATTGTTTCCTAGCCATCCCTAACTCGTAACTTATTAAACAAACAGCAGGAAGACAATCATTGAAGAGGCTCGAAAGTGTTTAACAAAAGGCGGGCATCAAAAAATGCGGCAGAGCATAAATGTTCGACTTATCGGAAATGCATGCCATGACCAAATAATGAAGATACTATAACGTTAATGAGATGAAAAAGAAATGAGAAGTTTGATTTGACTGTAGAATGTAGACGGAGACGTTATAACCTGGGTGGCGGAGAACTTCGTTTAGCTGGTGGAGATGAAGCGCGAGTCCGCCGAGCTGTTTCAGTCGGACTGAAAAACAAATGGAAATGTGATTTCGATGTATAATGACCGCGTAAAAATGATTAACATTTGGTATACGAAGCGCGTCTGTTCCTTGATAACGTAATGATTCCAAAATTTGGCTTCGAATAAATACAGGAAGATCCAATCAACGGCAACAAAAGTGAAATGCTTAATCAAGCAGACTCCCAGGCATAAAGAAAAAAGAAAAAAAAAAACCTAATTCTGATAGTTCCTCTCACACTGACAACCAATAAGCAACAAATGCAAAACCCCAAAAACGAAAATGCAAGGTCAAATGAAAGACGAACCTCTTTCTCTGAGGAGGGGGGCTTCGGCTCCGAGAACTACCGCTGCGAGAGAGAGACGAAGACGAGGAAATGGACCTGGAACGAGAACGGGAGCGGGAGACAGAGGCAGACCTGGAGCGCGAGCGGGAACTGGAGCGGGAATCAGAGCCGGAGAATGAGCGGGAACGTGAGGAGGAACCCGACCCCGACGGCGGCGAGCGACGGCCTCTGCTTGGTTTCGCCATGGCCGGCAATAGGTGCAGAGTGAAGATTGAAACCCTAGCTTAA

mRNA sequence

ATGGCTGACAAACAAAGAGAATATCACAAAAGACGGAGACGTTATAACCTGGGTGGCGGAGAACTTCGTTTAGCTGGTGGAGATGAAGCGCGAGTCCGCCGAGCTGTTTCAGTCGGACTGAAAAACAAATGGAAATGTGATTTCGATGAAGATCCAATCAACGGCAACAAAAGAGGGGGGCTTCGGCTCCGAGAACTACCGCTGCGAGAGAGAGACGAAGACGAGGAAATGGACCTGGAACGAGAACGGGAGCGGGAGACAGAGGCAGACCTGGAGCGCGAGCGGGAACTGGAGCGGGAATCAGAGCCGGAGAATGAGCGGGAACGTGAGGAGGAACCCGACCCCGACGGCGGCGAGCGACGGCCTCTGCTTGGTTTCGCCATGGCCGGCAATAGGTGCAGAGTGAAGATTGAAACCCTAGCTTAA

Coding sequence (CDS)

ATGGCTGACAAACAAAGAGAATATCACAAAAGACGGAGACGTTATAACCTGGGTGGCGGAGAACTTCGTTTAGCTGGTGGAGATGAAGCGCGAGTCCGCCGAGCTGTTTCAGTCGGACTGAAAAACAAATGGAAATGTGATTTCGATGAAGATCCAATCAACGGCAACAAAAGAGGGGGGCTTCGGCTCCGAGAACTACCGCTGCGAGAGAGAGACGAAGACGAGGAAATGGACCTGGAACGAGAACGGGAGCGGGAGACAGAGGCAGACCTGGAGCGCGAGCGGGAACTGGAGCGGGAATCAGAGCCGGAGAATGAGCGGGAACGTGAGGAGGAACCCGACCCCGACGGCGGCGAGCGACGGCCTCTGCTTGGTTTCGCCATGGCCGGCAATAGGTGCAGAGTGAAGATTGAAACCCTAGCTTAA

Protein sequence

MADKQREYHKRRRRYNLGGGELRLAGGDEARVRRAVSVGLKNKWKCDFDEDPINGNKRGGLRLRELPLRERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDPDGGERRPLLGFAMAGNRCRVKIETLA

Homology

[Close]

BLAST of ClCG11G016440 vs. TrEMBL
Match: G9MLB2_HYPVG (Uncharacterized protein (Fragment) OS=Hypocrea virens (strain Gv29-8 / FGSC 10586) GN=TRIVIDRAFT_112776 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 69  RERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDP 116
           RER+ + E + ERERERE E + ERERE ERE E E ERERE+ P+P
Sbjct: 605 REREREREREREREREREREKEKEREREREREREREREREREKLPEP 651

[Close]

BLAST of ClCG11G016440 vs. TrEMBL
Match: A0A0F8B186_CERFI (J domain-containing protein OS=Ceratocystis fimbriata f. sp. platani GN=CFO_g2747 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-06
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 62  RLRELPL-RERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDPDGGER 121
           R R+L L RER+ ++E +LERERE E E +LERERELE E E E + ERE E +    + 
Sbjct: 677 RERQLELERERELEQERELERERELERERELERERELELEREHERQLEREREKEKLTRQE 736

Query: 122 RPL 124
           RPL
Sbjct: 737 RPL 739

[Close]

BLAST of ClCG11G016440 vs. TrEMBL
Match: A0A0F8B186_CERFI (J domain-containing protein OS=Ceratocystis fimbriata f. sp. platani GN=CFO_g2747 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 62  RLRELPLRERDEDEEMDLERERERETEADLERERELERESEPENEREREEE 113
           R REL L   + + +++LERERE E E +LERERELERE E E ERE E E
Sbjct: 669 RQRELEL---ERERQLELERERELEQERELERERELERERELERERELELE 716

HSP 2 Score: 52.8 bits (125), Expect = 4.1e-04
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 62  RLRELPL---RERDEDEEMDLERERERETEADLERERELERESEPENER------EREEE 121
           R REL L   R+ + + E +LE+ERE E E +LERERELERE E E ER      ERE E
Sbjct: 669 RQRELELERERQLELERERELEQERELERERELERERELERERELELEREHERQLERERE 728

Query: 122 PDPDGGERRPL 124
            +    + RPL
Sbjct: 729 KEKLTRQERPL 739

HSP 3 Score: 48.9 bits (115), Expect = 5.9e-03
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 62  RLRELPLRERDEDEEMDLERERER----ETEADLERERELERESEPENEREREEE 113
           R+ E   RE++ + + +LE ERER    E E +LE+ERELERE E E ERE E E
Sbjct: 656 RVLEAERREQELERQRELELERERQLELERERELEQERELERERELERERELERE 710

HSP 4 Score: 45.4 bits (106), Expect = 6.5e-02
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1


Query: 69  RERDEDEEMDLERER-----------ERETEADLERERELERESEPENEREREEEPDPDG 124
           RER+ ++E + ERER           ER+ E +LERER+LE E E E E+ERE E + + 
Sbjct: 642 REREREKEKERERERVLEAERREQELERQRELELERERQLELERERELEQERELEREREL 701

HSP 5 Score: 59.3 bits (142), Expect = 4.3e-06
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 69  RERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDPDGG 119
           RER+ + E + ERERERE E + ER+R+ ERE E E ERERE E + +GG
Sbjct: 146 RERERERERERERERERERERERERDRDREREREREREREREREREREGG 195

[Close]

BLAST of ClCG11G016440 vs. TrEMBL
Match: K7E3Q3_MONDO (Uncharacterized protein (Fragment) OS=Monodelphis domestica PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1


Query: 70  ERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDPDGGERR 122
           E + + E + ERERERETE + ERERE ERE E E ERERE E + +    R
Sbjct: 81  ETETERERERERERERETETERERERETERERERERERERERERERERERER 132

HSP 2 Score: 52.8 bits (125), Expect = 4.1e-04
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1


Query: 69  RERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPD 115
           R+RD + E D ER+R+RETE + E E E+E E+E E ERERE E +
Sbjct: 22  RDRDRETETDRERDRDRETEREREGETEIETETEREREREREIETE 67

HSP 3 Score: 52.8 bits (125), Expect = 4.1e-04
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1


Query: 70  ERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDPDGGERR 122
           E + + E + ERERE ETE + ERERE ERE E E ERERE E + +    R
Sbjct: 65  ETEIETETETEREREGETETERERERERERERETETERERERETERERERER 116

HSP 4 Score: 49.7 bits (117), Expect = 3.4e-03
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 70  ERDEDEEMDL----------ERERERETEADLERERELERESEPENEREREEEPDPDGGE 122
           ER+ + E ++          ERERE ETE + ERERE ERE E E ERERE E + +   
Sbjct: 55  EREREREREIETEIETETETEREREGETETERERERERERERETETERERERETERERER 114

HSP 5 Score: 48.1 bits (113), Expect = 1.0e-02
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 69  RERDEDEEMDLERERERE----------TEADLERERELERESEPENEREREEEPDPDGG 122
           RER+ + E++ E ERERE          TE + ERERE E E+E E ERERE E + +  
Sbjct: 42  REREGETEIETETEREREREREIETEIETETETEREREGETETERERERERERERETETE 101

HSP 6 Score: 47.4 bits (111), Expect = 1.7e-02
Identity = 32/77 (41.56%), Postives = 39/77 (50.65%), Query Frame = 1


Query: 58  RGGLRLRELPL-----RERDEDEEMDLERERERETEADLERER--------ELERESEPE 117
           RGG R R+        RERD D E + ERE E E E + ERER        E+E E+E E
Sbjct: 16  RGGERERDRDRETETDRERDRDRETEREREGETEIETETEREREREREIETEIETETETE 75

Query: 118 NEREREEEPDPDGGERR 122
            ERE E E + +    R
Sbjct: 76  REREGETETERERERER 92

HSP 7 Score: 44.3 bits (103), Expect = 1.4e-01
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 1


Query: 69  RERDEDEEMDLERERERETEADLERERELERESEPENEREREEEPDPDGGERRPL 124
           R++D     + ER+R+RETE D ER+R+ E E E E E E E E + +    R +
Sbjct: 10  RQKDRGRGGERERDRDRETETDRERDRDRETEREREGETEIETETEREREREREI 64

[Close]

BLAST of ClCG11G016440 vs. TAIR10
Match: AT2G03150.1 (AT2G03150.1 ATP/GTP-binding protein family)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1


Query: 63  LRELPLRE----RDEDEEMDLERERERETEADLERERELERESEPENERERE 111
           LRE  LRE    R++    D ERERERE E D ERER+ ERE +   +RERE
Sbjct: 350 LREFDLREEERRREDQRARDKEREREREREHDRERERQRERERQRARDRERE 401

HSP 2 Score: 47.8 bits (112), Expect = 6.6e-06
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1


Query: 69  RERDEDEEMDLERERERETEADLERERELE-RESEPENEREREEE 113
           RER+ D E + +RERER+   D ERER LE RE E + ERERE +
Sbjct: 376 REREHDRERERQRERERQRARDRERERILERREKERQGERERERK 420

HSP 3 Score: 30.4 bits (67), Expect = 1.1e+00
Identity = 13/42 (30.95%), Postives = 24/42 (57.14%), Query Frame = 1


Query: 75   EEMDLERERERETEADLERERELERESEPENEREREEEPDPD 117
            E +++E E + E + D + + E + E +PE + E + E DP+
Sbjct: 1146 EAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPE 1187

HSP 4 Score: 29.6 bits (65), Expect = 1.9e+00
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 1


Query: 69  RERDEDEEMDLER-ERERETEADLERERELE 99
           R RD + E  LER E+ER+ E + ER+R LE
Sbjct: 394 RARDRERERILERREKERQGERERERKRALE 424

The following BLAST results are available for this feature:

BLAST of ClCG11G016440 vs. TrEMBL


Match Name	E-value	Identity	Description
G9MLB2_HYPVG	1.9e-06	61.70	Uncharacterized protein (Fragment) OS=Hypocrea virens (strain Gv29-8 / FGSC 1058...	[more]
A0A0F8B186_CERFI	3.3e-06	53.97	J domain-containing protein OS=Ceratocystis fimbriata f. sp. platani GN=CFO_g274...	[more]
A0A0F8B186_CERFI	2.4e-04	58.82	J domain-containing protein OS=Ceratocystis fimbriata f. sp. platani GN=CFO_g274...	[more]
K7E3Q3_MONDO	4.8e-05	53.85	Uncharacterized protein (Fragment) OS=Monodelphis domestica PE=4 SV=1	[more]

BLAST of ClCG11G016440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03150.1	1.0e-06	53.85	ATP/GTP-binding protein family	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G016440.1	ClCG11G016440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 69..101 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G016440	Silver-seed gourd	carwcgB0304
ClCG11G016440	Silver-seed gourd	carwcgB0620
ClCG11G016440	Silver-seed gourd	carwcgB1018
ClCG11G016440	Cucumber (Chinese Long) v3	cucwcgB288
ClCG11G016440	Watermelon (97103) v2	wcgwmbB064
ClCG11G016440	Wax gourd	wcgwgoB181
ClCG11G016440	Cucumber (Gy14) v1	cgywcgB047
ClCG11G016440	Cucurbita maxima (Rimu)	cmawcgB016
ClCG11G016440	Cucurbita maxima (Rimu)	cmawcgB390
ClCG11G016440	Cucurbita maxima (Rimu)	cmawcgB393
ClCG11G016440	Cucurbita moschata (Rifu)	cmowcgB009
ClCG11G016440	Cucurbita moschata (Rifu)	cmowcgB387
ClCG11G016440	Wild cucumber (PI 183967)	cpiwcgB289
ClCG11G016440	Cucumber (Chinese Long) v2	cuwcgB279
ClCG11G016440	Melon (DHL92) v3.5.1	mewcgB459
ClCG11G016440	Melon (DHL92) v3.5.1	mewcgB462
ClCG11G016440	Watermelon (97103) v1	wcgwmB103
ClCG11G016440	Cucurbita pepo (Zucchini)	cpewcgB488
ClCG11G016440	Cucurbita pepo (Zucchini)	cpewcgB492
ClCG11G016440	Cucurbita pepo (Zucchini)	cpewcgB695
ClCG11G016440	Bottle gourd (USVL1VR-Ls)	lsiwcgB259
ClCG11G016440	Cucumber (Gy14) v2	cgybwcgB259
ClCG11G016440	Melon (DHL92) v3.6.1	medwcgB452
ClCG11G016440	Melon (DHL92) v3.6.1	medwcgB455