ClCG11G008990 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008990
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gypsy/ty3 element polyprotein
Location	CG_Chr11 : 13521748 .. 13522200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCACCGCCATTGGTGGAGGAGATATCGTTGACTGAAACATCAAACAAGATCAAAGAGGGGGGATACAGTTGGAGCAAGTTCAAGAAGGTTGAGATGTCAGTCTTCAATGGAAAAGATCTAGATTCGTGGTTATTTAGAACAAACATGTATTTTCAAATTCATATGTTAATTGAGTCAAAAAAACTTACCGTTATTAGTTTTGAAGGTATAAGGGAAGGAATTTATAAAGCGGTGGAGTTGAAGGTAGCGGAGTTGACAATTCATAATTGTGGAAAGTTTCTTGCCTCTAGACTTGAGTGGTGTGTGCATCATGCTCGAAATGCAACCATGTACCTTAGGAGTTATGGAAGTGAAGTGGCGATGATTATGAAGGTGAAAGCAAGGAAGTCTGAGGTATCAATAAAGGGGGACCCAAGGTTGACTAGAGCACGTGTGACAATGAAGTAA

mRNA sequence

ATGGAATCACCGCCATTGGTGGAGGAGATATCGTTGACTGAAACATCAAACAAGATCAAAGAGGGGGGATACAGTTGGAGCAAGTTCAAGAAGGTTGAGATGTCAGTCTTCAATGGAAAAGATCTAGATTCGTGGTTATTTAGAACAAACATGTATTTTCAAATTCATATGTTAATTGAGTCAAAAAAACTTACCGTTATTAGTTTTGAAGGTATAAGGGAAGGAATTTATAAAGCGGTGGAGTTGAAGGTAGCGGAGTTGACAATTCATAATTGTGGAAAGTTTCTTGCCTCTAGACTTGAGTGGTGTGTGCATCATGCTCGAAATGCAACCATGTACCTTAGGAGTTATGGAAGTGAAGTGGCGATGATTATGAAGGTGAAAGCAAGGAAGTCTGAGGTATCAATAAAGGGGGACCCAAGGTTGACTAGAGCACGTGTGACAATGAAGTAA

Coding sequence (CDS)

ATGGAATCACCGCCATTGGTGGAGGAGATATCGTTGACTGAAACATCAAACAAGATCAAAGAGGGGGGATACAGTTGGAGCAAGTTCAAGAAGGTTGAGATGTCAGTCTTCAATGGAAAAGATCTAGATTCGTGGTTATTTAGAACAAACATGTATTTTCAAATTCATATGTTAATTGAGTCAAAAAAACTTACCGTTATTAGTTTTGAAGGTATAAGGGAAGGAATTTATAAAGCGGTGGAGTTGAAGGTAGCGGAGTTGACAATTCATAATTGTGGAAAGTTTCTTGCCTCTAGACTTGAGTGGTGTGTGCATCATGCTCGAAATGCAACCATGTACCTTAGGAGTTATGGAAGTGAAGTGGCGATGATTATGAAGGTGAAAGCAAGGAAGTCTGAGGTATCAATAAAGGGGGACCCAAGGTTGACTAGAGCACGTGTGACAATGAAGTAA

Protein sequence

MESPPLVEEISLTETSNKIKEGGYSWSKFKKVEMSVFNGKDLDSWLFRTNMYFQIHMLIESKKLTVISFEGIREGIYKAVELKVAELTIHNCGKFLASRLEWCVHHARNATMYLRSYGSEVAMIMKVKARKSEVSIKGDPRLTRARVTMK

Homology

[Close]

BLAST of ClCG11G008990 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-06
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 14  ETSNKIKEG-GYSWSKFKKVEMSVFNGKDLDSWLFRTNMYFQIHMLIESKKL--TVISFE 72
           ETS  ++ G G    KFKK+EM VFNG+D D W+++   YFQ+H+L E +KL   ++S E
Sbjct: 80  ETSLSLEPGAGQDRIKFKKLEMPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVSME 139

[Close]

BLAST of ClCG11G008990 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 7.1e-08
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 7   VEEISLTETSNKIKEGGYSWSKFKKVEMSVFNGKDLDSWLFRTNMYFQIHMLIESKKLTV 66
           VEEI+  +  N+  E     SKFKKVEM VF G+D +SWLFR   YFQIH L ES+K+ V
Sbjct: 97  VEEINTKK--NEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLV 156

Query: 67  --ISFEGIREGIYKAVE 82
             I F+G     Y+A E
Sbjct: 157 STICFDGPALNWYRAQE 171

[Close]

BLAST of ClCG11G008990 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 27  SKFKKVEMSVFNGKDLDSWLFRTNMYFQIHMLIESKKLTV--ISFEGIREGIYKAVE 82
           +KFKK+EM +F G+D DSWLFR   YFQIH L ES+KL V  +SF+G     Y++ E
Sbjct: 122 NKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEKLLVSTVSFDGPALNWYRSQE 178

[Close]

BLAST of ClCG11G008990 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 32.7 bits (73), Expect = 6.6e+02
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1


Query: 129 ARKSEVSIKGDPRLTRARVTMK 151
           A   EV+IKGDP LTRAR+++K
Sbjct: 541 AEGKEVNIKGDPSLTRARISLK 562

HSP 2 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 27  SKFKKVEMSVFNGKDLDSWLFRTNMYFQIHMLIESKKLTV--ISFEG 72
           +KFKK+EM VF G+D DSWLFR   YFQIH L +S+K+ V  ISF+G
Sbjct: 122 NKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEKMLVSTISFDG 168

The following BLAST results are available for this feature:

BLAST of ClCG11G008990 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC35_CUCME	7.9e-06	47.54	Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of ClCG11G008990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134102\|ref\|XP_008467029.1\|	7.1e-08	50.65	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	3.5e-07	54.39	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	6.6e+02	63.64	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008990.1	ClCG11G008990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008990	Watermelon (97103) v2	wcgwmbB067
ClCG11G008990	Watermelon (97103) v1	wcgwmB104
ClCG11G008990	Bottle gourd (USVL1VR-Ls)	lsiwcgB088