ClCG11G008980 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G008980
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy3-gypsy retrotransposon protein
LocationCG_Chr11 : 13517880 .. 13518644 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGAAGGAGGCGGAAGATAAGTTGGAGACGCACGAACGGGATATAACCGGGTTGAAGGAACTAGTCTTCGTGATGTGTAAGAACGTCGATCAGCTGATGGGGGAAATGTGGGAAATAACGCTGAGTAGAGGCAAGGATGGGTCACTGATTACGAAAGGCTCACAGAAATGCGGAATAGGCACCGAGGTGGAGGAAGGAGAATTGTCACAGACGAAGGGAAGAGGCGACAAGGGGAAGTATAAATGGCTGGAGATGCTGATCTTCAAGGGAGATCCCCTCGAGTCATGGGTTTATCGCGCCGAGCATTATTTTGAGATACACGAGCTGACGGATGAAGAGAAGATCAAGGTAGCGATAATCAGCTTCGATCATGACTCAGTGGATTCGTATTGCATAACTGAAAACCGATTCGATCATGGGAAGAGTTGAAGAGAAGAATGTTAGTCCGGTTTTAGACGTTCACGAGAGGGAAGCTTGACGAGAAGGTTGCTGGCGATTAAACAAGATGGAAGCTACGCCGAAAACCAAAAGCAATTTGAGAGGTTCTTCGCGCCTATACCAGAGATATCAGAATCGGTTTTAAAGGGAACTTTTATCAACAGATTGGATCCGAAGTTGAAGGCGAAGGTCGAAAGTAGGAATCCGATCGGTTTGGAAGAGGCGATGCATGAAGCGCAAGCCATCAACGACGAAATCCAAGCAATGAAGGAGATTAAGAGCGGCGGAAAGAAATCAGTGAAGGGAGACGTGAAGGCCTAA

mRNA sequence

ATGGCAAGGAAGGAGGCGGAAGATAAGTTGGAGACGCACGAACGGGATATAACCGGGTTGAAGGAACTAGTCTTCGTGATGTGTAAGAACGTCGATCAGCTGATGGGGGAAATGTGGGAAATAACGCTGAGTAGAGGCAAGGATGGGTCACTGATTACGAAAGGCTCACAGAAATGCGGAATAGGCACCGAGTCCGGTTTTAGACGTTCACGAGAGGGAAGCTTGACGAGAAGGTTGCTGGCGATTAAACAAGATGGAAGCTACGCCGAAAACCAAAAGCAATTTGAGAGGTTCTTCGCGCCTATACCAGAGATATCAGAATCGGTTTTAAAGGGAACTTTTATCAACAGATTGGATCCGAAGTTGAAGGCGAAGGTCGAAAGTAGGAATCCGATCGGTTTGGAAGAGGCGATGCATGAAGCGCAAGCCATCAACGACGAAATCCAAGCAATGAAGGAGATTAAGAGCGGCGGAAAGAAATCAGTGAAGGGAGACGTGAAGGCCTAA

Coding sequence (CDS)

ATGGCAAGGAAGGAGGCGGAAGATAAGTTGGAGACGCACGAACGGGATATAACCGGGTTGAAGGAACTAGTCTTCGTGATGTGTAAGAACGTCGATCAGCTGATGGGGGAAATGTGGGAAATAACGCTGAGTAGAGGCAAGGATGGGTCACTGATTACGAAAGGCTCACAGAAATGCGGAATAGGCACCGAGTCCGGTTTTAGACGTTCACGAGAGGGAAGCTTGACGAGAAGGTTGCTGGCGATTAAACAAGATGGAAGCTACGCCGAAAACCAAAAGCAATTTGAGAGGTTCTTCGCGCCTATACCAGAGATATCAGAATCGGTTTTAAAGGGAACTTTTATCAACAGATTGGATCCGAAGTTGAAGGCGAAGGTCGAAAGTAGGAATCCGATCGGTTTGGAAGAGGCGATGCATGAAGCGCAAGCCATCAACGACGAAATCCAAGCAATGAAGGAGATTAAGAGCGGCGGAAAGAAATCAGTGAAGGGAGACGTGAAGGCCTAA

Protein sequence

MARKEAEDKLETHERDITGLKELVFVMCKNVDQLMGEMWEITLSRGKDGSLITKGSQKCGIGTESGFRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIKSGGKKSVKGDVKA
Homology
[Close]
BLAST of ClCG11G008980 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR    G+   R LAIKQ+GS +E  ++FE   AP+PE++E VL+GTF N LDP+++ +V
Sbjct: 141 FRCRDYGTACARFLAIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEV 200

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMK 153
            +   +GLE+ M  AQ   ++ +  K
Sbjct: 201 FAMRVVGLEDLMEAAQLAEEKAEVTK 226

[Close]
BLAST of ClCG11G008980 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           F+   EGSL  RL+ IKQDG Y++  K+F  + AP+PE++ESVL   F+  L+  L+A+V
Sbjct: 128 FKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGLETNLQAEV 187

Query: 127 ESRNPIGLEE 137
           +SR+P+ LEE
Sbjct: 188 KSRHPVTLEE 197

[Close]
BLAST of ClCG11G008980 vs. TrEMBL
Match: B9T325_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0327000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 32/85 (37.65%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR ++EG+L  +LLA+KQ  +  E ++QFE   AP+  ++E VL+  F+N L P ++A++
Sbjct: 178 FRSTQEGTLHDQLLALKQTTTVKEFRRQFEIIAAPLKGLAEDVLEAAFVNGLRPDMQAEL 237

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAM 152
              +P GL++ M  AQ I ++++A+
Sbjct: 238 RQWSPFGLDKKMQVAQKIEEKLKAL 262

[Close]
BLAST of ClCG11G008980 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-08
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR ++EGSL  + LA++Q G+ A   ++FE    P+  ISE V++ TF+N L P+++A+ 
Sbjct: 843 FRLTQEGSLCEQFLAVRQQGTVAAYWREFEILETPLKGISEEVMESTFMNGLLPEIRAEQ 902

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMKEIKS-GGKKSVK 164
               P GL   M  AQ + D   AM+  +   G KS K
Sbjct: 903 RLLQPYGLGHLMEMAQRVEDRNLAMRAAREPNGPKSTK 940

[Close]
BLAST of ClCG11G008980 vs. TrEMBL
Match: W9R4P8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024737 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-08
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           F  S+EG  T+RL+A++Q G+ AE  + FE   A +  I E V +  F+N L   ++ +V
Sbjct: 221 FSLSQEGDPTKRLMALRQGGTVAEYWEGFEALAATLSGIPEKVYRSAFLNGLREDIRVEV 280

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMKEIKSG 158
           +   PIGL E M  AQ + D ++ +  ++ G
Sbjct: 281 KMHRPIGLPETMDLAQQVEDRLEVVDRVRKG 311

[Close]
BLAST of ClCG11G008980 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           F+ + + SL  RL+ I+QDGSY +  K+F  + AP+P ++ESVL+  F+  L+P L+A+V
Sbjct: 156 FKDTGQKSLVARLIRIEQDGSYNDYVKKFVNYSAPLPHMTESVLRDAFLTGLEPNLQAEV 215

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMK--EIKSGGKKSVKGD 166
            S NP+ LEE M EAQ +ND   A++  + + GG    KG+
Sbjct: 216 VSHNPLTLEECMREAQLVNDRNLALQWSKAEGGGLNYKKGE 256

[Close]
BLAST of ClCG11G008980 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.0e-12
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR S + SL  RL+ I+QDGSY E  K+F  + AP+P ++ SVL   F+  L+P L+A+V
Sbjct: 99  FRDSGQKSLGARLIRIQQDGSYNEYVKKFVIYSAPLPYMAGSVLVDAFVTGLEPSLQAEV 158

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMK---------EIKSGGKKSVK--GDV 167
            SR+P  LE+ M EAQ +ND   A+K         E + GG   VK  GDV
Sbjct: 159 ISRHPQTLEDCMREAQLVNDRNLALKLSKMELGMTEWEEGGSSKVKKLGDV 209

[Close]
BLAST of ClCG11G008980 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-11
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR + + SL  RL+ I+Q+GSY +  K+F  + AP+P ++ESVL+  F+  L+P L+A+V
Sbjct: 150 FRDTGQKSLGARLIRIQQEGSYNDYVKKFVNYSAPLPHMAESVLRDAFLTGLEPALQAEV 209

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMK 153
            SR+P  LEE M  AQ +ND   A+K
Sbjct: 210 MSRHPHTLEECMMAAQLVNDRNLALK 235

[Close]
BLAST of ClCG11G008980 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR + + SL  RL+ I+QDGSY E  K+F  + AP+P ++ESVL+  F+  L+P L+A+V
Sbjct: 156 FRDTGQKSLGARLIWIQQDGSYNEYVKKFVNYSAPLPYMAESVLRDAFLTGLEPTLQAEV 215

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMK 153
            SR+P  LEE M EA  +ND   A+K
Sbjct: 216 VSRHPQTLEECMMEALLVNDCNLALK 241

[Close]
BLAST of ClCG11G008980 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 37.4 bits (85), Expect = 3.0e+01
Identity = 23/75 (30.67%), Postives = 40/75 (53.33%), Query Frame = 1 

Query: 1  MARKEAEDKLETHERDITGLKELVFVMCKNVDQLMGEMWEITLSRGKDGSLITKGSQKCG 60
          MA+++ E++LE  E+++ GLKE++  M K +++L  EM E    + K+ S          
Sbjct: 1  MAQRQVEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEES---------- 60

Query: 61 IGTESGFRRSREGSL 76
           GT  GF    +G +
Sbjct: 61 -GTFDGFVMKLKGKM 64


HSP 2 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 67  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKV 126
           FR    G+   R LAIKQ+GS +E  ++FE   AP+PE++E VL+GTF N LDP+++ +V
Sbjct: 141 FRCRDYGTACARFLAIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEV 200

Query: 127 ESRNPIGLEEAMHEAQAINDEIQAMK 153
            +   +GLE+ M  AQ   ++ +  K
Sbjct: 201 FAMRVVGLEDLMEAAQLAEEKAEVTK 226

The following BLAST results are available for this feature:
BLAST of ClCG11G008980 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC18_CUCME2.6e-1041.86Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCI2_CUCME2.9e-0948.57Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
B9T325_RICCO2.5e-0837.65Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0327000 PE=4 SV=1[more]
A5B2I6_VITVI3.2e-0837.76Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
W9R4P8_9ROSA7.2e-0835.16Uncharacterized protein OS=Morus notabilis GN=L484_024737 PE=4 SV=1[more]
BLAST of ClCG11G008980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697580|ref|XP_011654353.1|2.8e-1342.57PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659094491|ref|XP_008448087.1|9.0e-1244.14PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|659093928|ref|XP_008447791.1|5.9e-1145.35PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo][more]
gi|659112485|ref|XP_008456244.1|1.0e-1047.67PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
gi|659112485|ref|XP_008456244.1|3.0e+0130.67PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G008980.1ClCG11G008980.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
score: -coord: 134..154
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G008980Watermelon (97103) v2wcgwmbB067
ClCG11G008980Watermelon (97103) v1wcgwmB104
ClCG11G008980Bottle gourd (USVL1VR-Ls)lsiwcgB088