ClCG11G008770 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008770
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr11 : 12892722 .. 12896674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGGCGGAGGTAAAAGATGGCTTGCGGCGACAGCAACGGGCGCACAGACTCACAGAACAGTGGCGGACCTGCGTCGCCGACGGCGAGCGTACACAGGTGCCGGTGGCTTGGCCTGCTACTGGTGACATCTGGTTGGCGGAGAGGGAGACACGGAAGACCGGAAGAAGAAGAAGAAAAAAGAAAAGGGAGGGGGGTGGGCACTGGTACGAAAAGGGAGAGAGAGAGAAAAGAAATTTTCTTTTCTTTTTCTTTTCTTTACTTTAACCTAGCACGCAAACTGAGACTCATAAATAACCCAAAAATAAAATCTTTTCCACTTTCCCATCCAATTTAAATCTTCCAACTTAAATCTTCTCTCTTCCCCACTTTACAATAAAATCTTCCTTTTTTTTCCAATTAAATTAAATTTTCTTTCTTAAATCTTCTTTCTTTTCAAATTAAATTATATCTTCTTTCTTTCCAAATTAAATTAAATCTTTACTTTCTTAAGCAAATAACACTTAGTAAAACTCAATCTCCCTTTAATGTTTCTATAGATTAATTAATAATTGATTAATTACTTATGTTTTTTTTCTCTAAATTCTCCTAACTTTTTATTAAAAGATGGGTTCGTAATAAAGAGGAAAAATACCTGAAGTTTTGGGGCGTCACATGATAACTTTTCCTCAACCCTTGATAGATTTAGTTACCCGTGGTTTTAATAAATAATATGGAAAGATTTGAAGAAGTGAAACTCATGGAAGATAGATGAATATAATGGATATAATGAAGTTGTTACAAAAATATTCAATGTCTTAAACTATGAAAGTAATCAATAGAATGAAGAATAAAAAAATAGAAAGCATGAAGTTAAGTCGATGATAGCAATTTCTTGTTCCCGTCAGCGATGGACGCATGCTTCACTGCGTGCGGTGGTGGGATGGTTGGTCGTCGAGAAGATTACTCTCTCGAGTTCTCTATCTCCGGTTGTCTTCTAGGAAAGGGTCTGCCCAAGACAGCCAAAGTCCAAAAATTTTCAACAACGTTCTTTTTGTCCTTAGCATAGTTTATTTATAGAGTTTGCATTGTATTTTGGGATGTTAACATTTCCTTGTTGCTGATGTACTACAGACGATGCGTTTGCTCTTCGTCAACCTTTGGCTGGTAGGTGGTCTATTGCAGTGTTGCAATCAGAATAGAATATCCTCCACAGGTCAGGTTGCAGGTGTCAGAGATCCCAAAGCATGCGTCCCATAATCTTTGTTTCTTGTTTATTGGATGCATACACTGAACTCAGGCGTTTTTGCAAAAGATCAACAGTTTAAGATAGATTTTATCTTTAAAAAGTTAACTTTAAGCAATTCATTTATGTTGGACGCAGGGAAGATTTTTATCAATAATTTCAAGTCAAGATTGTCGCATGATACATTAAATTCTCTCCATTATTCTAAGAAAAGACTATAATAACTTGTATTCATACTTTATCAAGTTATCAGGACTTTACTGGGATCAGCCCTGACCTTTCATGGGATTAGATCTACTTTATTAAGCTCACTTTAAGCAGCCTGCCACATCTCAAGTCAGGAACTTGCTTAACTTTCCAATCGGGTTAAGTCTTGCTTCTGAGTGAACCAAGACTAGCTTTTCAACACTTACCGAGTGCCCACCAATATCCAATAATTATTGGTATGTTTAGTCGGGCAGCTGATAAGCACTTGAAAAGTGCTTTCTATTCTCTCAAATTAAGGGAGTTTATATTAGATTTCACTTGTTTGCTAGTAATTTTTAGGTTAAAACGAGGAAAATTAGAAGAAACGACTAAAAGATCAAAACCGAGCAAGAATACAGCGAAAAAGAGCTGAAAAGGGCAAATTTTCGGATAGCGCCGCGGCGTTGAAACATAAATGCATCGTTCTGGACGCATAGTAGCGCCGCGGCGCTGAGACGGCGCTACCGCGACGCTAAAACATAAACGCATCGTTCTGGACGCATAGTAGCATCGCGGTGCCGAGATGGCGCTGCCTCGACGTAACCTTGTTGAACGCATGACAGCGTCGCGGCGCTAATGCCCGAGAACAATATTTCTGAAACGCATCACAGCGTCACGACGCTTGGACGGCACTGCCGTGGCGCTAAAACCCGAGAGCAACAATTTTGGATGCAGCCCTAGCACCGCAGCGCCAACTTTCCTTAAATGAAAAAATGATATTTTTGGTAAATTTTTGGGCTGCCAAACTCTATAAATTTTTGGGTTTCCAACAGCACAAATCATCAAAAAAAAAAAATAAAAGCAAAGCAAGGAAGTTACAGACCTAAAGGGGCACAAAAAGGAGAGAATTAAGTGAGAGTTCAAAGAGTGAGTTAGTTGCAAGGAAGAGTAAAAGAGTTCGAGATAGTAATGGTGCTTTTTGAATTCCGACGTGACAGCCAAGGAGATCATGACGGTGCTACCTCAATCAAGAGCCTCTTTTCAGTAGAGTTTCCCTTTCTTTACACTCTTTCTTTGTTTATTTTGGTTAAACATGTTGCTTCAAGCTATGAGTGGCTAAACTTTTTAGTTTTAGGGTTTTGATGATTTGTTTATGAATTTATGTTGATTTTGTAGACTTTCATGGTTTTGTTGGAATGATTATGCTTTTCATTGTTATTGTGTTTAATTCTTATGGATTGGCCATCCTCCCATGTTAGGTTAGATGTATGATTGAGAGATTGTATGTTTAACTTGATATACAACAATGAATTGTTGTTTATCACGAGAGTAGTTAGGTTGACAATAAAAGTTGCTAAAGACTATTTTTAATGCCATGTAATTTTGTATTGGTTTTAAGAGATTAATAATCAATCGAGTTGCATGAGAAATGGTTGTTTTTGGGAGAAAATAACTTGGAATTAAGTTTCTAGACTTAGGCATATGAATTACAATAAAATCCATGAAATCTATAATATTGCATGATGAAATAAACAAGGATTCATTACCCTAGAACTCTCTTTGACTCTTGTGTTTCTCACTTTAATACTTTCATTATTTGATTTCTATTTTCCATAACTTATAATATTCCATTTCAATCCTCAAATAAAATTGATTCAACTCTAGAATAGCTAAGTAACTTAAACCTTCCCAATTGGATCTCCAGTGGAATGATATTTGGACTTAACCGTCTTATATTATAACTTGACCCGTACACTTGCGGTTAACACTCAAAGTGCGCATCAGCAGCGGCGCTTATTCTAAGAAGAAGAGATATTGCTCTATCATAGACAACAAAGGCACAAATTTGACAGGAATACCTGCACCCTTGCCTAAGTCCTAGACTTGAATGAAGTAGCCTGGCTTAAAGTCTTATTTGTTTTTGCCTTTCTTCTCTGCCCTGTTTTCAAAATCGTTATTTCCTCCTTCCCCTCGTCAACTCGGGTAGAACTAAGCTGCAACTCTTCTTTTAACATGGGGTGGGCATAAGAGTAACTAGCTTCGATCTTGCATATATATCTAATATCTATCTATATTAGATATCAACCTGGTCAACTGTCGAGCAGTTTCTTTAAAACTTGCTTCAGATATTAAAAAATGTGTATTTAGAGATGCTTTTCTTTGTCATTTGACTTGTTAGGAAGGACAAAGCGGCTCAACTAGAGAGCCAAGAATGTAGCTAAGTCGTCTCACTTGAGAATTTCGGAGTCGGGATGTCATCTTGAACCTCAAGAACTCATTTTAAGGTTCAGGATGACATCTAGGATAATGCCATCCAGATTAAGTCTTGCTTCGAACGAGTCTGATAGGTGCAAACGGTTTGAAGAGGGTCTATGGAAAGAGACATGTACTCTAGTAACTGCAAGTGTGGAATGGACAAATTTCTCTGAGTTATTAGAGGCAGCTATGAGGCTGGAGAAGAGTTTATTAGAAGAAAAGCTAGAAAAGGAGATGTTTAAAGGAGGAAGAGTAAGACATACATCAGGGGTGTCACGTGAGTAG

mRNA sequence

ATGCACGGCGGAGGTAAAAGATGGCTTGCGGCGACAGCAACGGGCGCACAGACTCACAGAACAGTGGCGGACCTGCGTCGCCGACGGCGAGCGTACACAGGTGCCGGTGGCTTGGCCTGCTACTGGATGACATCTAGGATAATGCCATCCAGATTAAGTCTTGCTTCGAACGAGTCTGATAGGTGCAAACGGTTTGAAGAGGGTCTATGGAAAGAGACATGTACTCTAGTAACTGCAAGTGTGGAATGGACAAATTTCTCTGAGTTATTAGAGGCAGCTATGAGGCTGGAGAAGAGTTTATTAGAAGAAAAGCTAGAAAAGGAGATGTTTAAAGGAGGAAGAGTAAGACATACATCAGGGGTGTCACGTGAGTAG

Coding sequence (CDS)

ATGCACGGCGGAGGTAAAAGATGGCTTGCGGCGACAGCAACGGGCGCACAGACTCACAGAACAGTGGCGGACCTGCGTCGCCGACGGCGAGCGTACACAGGTGCCGGTGGCTTGGCCTGCTACTGGATGACATCTAGGATAATGCCATCCAGATTAAGTCTTGCTTCGAACGAGTCTGATAGGTGCAAACGGTTTGAAGAGGGTCTATGGAAAGAGACATGTACTCTAGTAACTGCAAGTGTGGAATGGACAAATTTCTCTGAGTTATTAGAGGCAGCTATGAGGCTGGAGAAGAGTTTATTAGAAGAAAAGCTAGAAAAGGAGATGTTTAAAGGAGGAAGAGTAAGACATACATCAGGGGTGTCACGTGAGTAG

Protein sequence

MHGGGKRWLAATATGAQTHRTVADLRRRRRAYTGAGGLACYWMTSRIMPSRLSLASNESDRCKRFEEGLWKETCTLVTASVEWTNFSELLEAAMRLEKSLLEEKLEKEMFKGGRVRHTSGVSRE

Homology

[Close]

BLAST of ClCG11G008770 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-11
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 53  SLASNESDRCKRFEEGLWKETCTLVTASVEWTNFSELLEAAMRLEKSLLEEKLEKEMFKG 112
           S+  +E DRCKRFE+GL +E  T VTAS EW  FS+L+E A+R+EKSL E K EKE+ + 
Sbjct: 193 SMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVETAVRVEKSLAERKNEKEVSRN 252

Query: 113 GRVRHTSGVSRE 125
                T GVSR+
Sbjct: 253 VSTAITQGVSRD 264

[Close]

BLAST of ClCG11G008770 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 54  LASNESDRCKRFEEGLWKETCTLVTASVEWTNFSELLEAAMRLEKSLLEEKLEKEMFKGG 113
           + ++ESD C+RFE GL  E  TLVTA  +WTNFS+L+E A+R+E+S++EEK   E+ +G 
Sbjct: 115 IVASESDMCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG- 174

Query: 114 RVRHTSGV 122
            V  TSG+
Sbjct: 175 -VSTTSGI 180

[Close]

BLAST of ClCG11G008770 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 54  LASNESDRCKRFEEGLWKETCTLVTASVEWTNFSELLEAAMRLEKSLLEEKLEKEMFKGG 113
           + ++ESDRC+RFE GL  E  T VTA  +WTNFS+L+E A+R+E+S++EEK   E+ +G 
Sbjct: 95  IVASESDRCRRFERGLRFELRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG- 154

Query: 114 RVRHTSGV 122
            V  TSG+
Sbjct: 155 -VSTTSGI 160

[Close]

BLAST of ClCG11G008770 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 54  LASNESDRCKRFEEGLWKETCTLVTASVEWTNFSELLEAAMRLEKSLLEEKLEKEMFKGG 113
           + ++ESDRC RFE GL  E  T VTA  +WTNFS+L+E A+R+E+S++EEK   E+ +G 
Sbjct: 90  IMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG- 149

Query: 114 RVRHTSGV 122
            V  TSG+
Sbjct: 150 -VSTTSGI 155

[Close]

BLAST of ClCG11G008770 vs. NCBI nr
Match: gi|778697787|ref|XP_011654404.1| (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.6e-08
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 53  SLASNESDRCKRFEEGLWKETCTLVTASVEWTNFSELLEAAMRLEKSLLEEKLEKEMFK 112
           S+  +E +RCK+FEEGL +E  TLVTA  +W +FS+ +EAA+R+EKS+ E K E+E  K
Sbjct: 19  SVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAALRVEKSVYERKREREASK 77

The following BLAST results are available for this feature:

BLAST of ClCG11G008770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116534\|ref\|XP_008458118.1\|	9.6e-11	54.17	PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo]	[more]
gi\|659112465\|ref\|XP_008456237.1\|	3.1e-09	51.47	PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo]	[more]
gi\|659133542\|ref\|XP_008466780.1\|	4.1e-09	51.47	PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo]	[more]
gi\|659118041\|ref\|XP_008458920.1\|	1.2e-08	51.47	PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]	[more]
gi\|778697787\|ref\|XP_011654404.1\|	7.6e-08	52.54	PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008770.1	ClCG11G008770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008770	Bottle gourd (USVL1VR-Ls)	lsiwcgB079
ClCG11G008770	Bottle gourd (USVL1VR-Ls)	lsiwcgB088
ClCG11G008770	Cucumber (Gy14) v2	cgybwcgB095
ClCG11G008770	Melon (DHL92) v3.6.1	medwcgB260
ClCG11G008770	Silver-seed gourd	carwcgB0023
ClCG11G008770	Silver-seed gourd	carwcgB0303
ClCG11G008770	Cucumber (Chinese Long) v3	cucwcgB113
ClCG11G008770	Watermelon (97103) v2	wcgwmbB067
ClCG11G008770	Wax gourd	wcgwgoB159
ClCG11G008770	Cucumber (Gy14) v1	cgywcgB099
ClCG11G008770	Cucurbita maxima (Rimu)	cmawcgB250
ClCG11G008770	Cucurbita moschata (Rifu)	cmowcgB238
ClCG11G008770	Cucurbita moschata (Rifu)	cmowcgB633
ClCG11G008770	Wild cucumber (PI 183967)	cpiwcgB103
ClCG11G008770	Cucumber (Chinese Long) v2	cuwcgB097
ClCG11G008770	Melon (DHL92) v3.5.1	mewcgB269
ClCG11G008770	Watermelon (97103) v1	wcgwmB104
ClCG11G008770	Cucurbita pepo (Zucchini)	cpewcgB162
ClCG11G008770	Cucurbita pepo (Zucchini)	cpewcgB367