ClCG11G008750 (gene) Watermelon (Charleston Gray)

NameClCG11G008750
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy1-copia retrotransposon protein
LocationCG_Chr11 : 12842798 .. 12854201 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAAATAGCTCCAAAGTCACAGATTCGTTAGAATCTGGTCAGTCCAGATTCGAACCTATTGTAGATCCAAACAAATTTGAGAAAGATAACAAGGCAGTCTGTGACCATTTGCTCAATCATATGACGGACTCGTTATTCGATTTATTCGTGGTCCAGAAGTCAACAAAGGTGATATGGGACACTCTGGAATCTAGGTATGGAGAAGATGTAGGCCGTAAAAAGTATGCTGTTGAAAAATGGTTGCAATTCCAGATGACGGACCAGAAACCAATTGTCGATCAAGTGCATGAATAAGAGAATCTGAGGTCGAACATTCTGTCCAAAGGTATGCAGTTTGATGCATAAATTTCATTTTACAGCAAGTGTACAAGTCAAGTTATAATATAATTAAAATAACTTGTAAGGCTGAGTATCGCCCTTAGGGAATTGGTTTGATTATTCTTTTAGCTATTTAGAGATCGTTCCAATTTTATTTAGGGAACCAAATTGTAATGATACTTAGGTTAAACTAATCGAAGAAAGCAAATAAAAGTGATCAAGATATGAAAAATATTAACTAAGAGTTGTTTTAGGGAATAAATTTCATCAAAGGTATTATTAAACACAATTTCTTGACTCTTGAAGTATTTAACACAACACTTAGATCTAGAAGTCTTTTATCCGGATTGAATCTTTTAAAAGTAGTCTTTTCTTTTACTTAAACCCTAATTACTAATTCCTTGAAACTAGGTGATTAAGCAAAGCATTAAGAACATTCATCAACAATCTTTATTGTTATCGAACTACTTTCTATGTTTTCAAACGATATTCTAGCATGCATAATCTAACTTAAACATAGAATCATTCAAATGTCAATCAAACATTCAAAAGCATTAAGAACGTTCATGCTAGAAAGCATAGATGCAAATTAACATTCAAGAAGCAAAGTGTTCAGCAATTTAAGCCTAAGAATTCATCTACCCCTAAAAGTATGAGGAGCTTAGCCTAACATGGCTTCCATAAGAAAAACCAACATTAGAACAACAAAATACAACAAATAAACCAAGAATAAAGAAGGGGAAGAAATGTTATTTGGCTTTCAAGCTCGTCTCCAGGATGGATTTGGCCTTCTAGCAATCCTCGAACCTTCTAACATCATGATATCTTCATATCTTGCAATAAACCCTCACTCTAGGACTCTAATTCTCCAATTTTTCATCTAAAAGTCGGCTTATGACGTCCCAATTTATAGAAAACCATATGCTTGCTCAAGAAGAACTTTCCAAAATTTCAGATTTTATATTTTTGGAAAGGTAGCATAGCTGCGCTCTAAGAGAGCAGAGCTATACTCTAGGAAGTTTAGTCGGGGCGTCGCTATGCTCTCAAAGAGTGTACTTGCGCTCCCTTACTATCCGAAATTTTAAGCTCTCAGGTTTGGAGCGTAGAGGGCAGCACAGTGACGTCTCGACTGTGCTGCCCTGTTTTTAAGGCATTTCCACTTTTTCTTTCATTTTTCGCTGGATTTTGGCTCGATTTGGTTCTTTTGACATCTAAACCTTATTTTCATCATTTTCACTTGAAAACCACTACCAAACACACTAAATCTAATAAAAACATTCCTAAATCAAAGGCAATAAAAACACATTTTTGGTGCTTTTCACAGATGTGTGAAATTCTCCAAGAGAATGTATTGCTTGAGAACTTTCCACAGTCCTCGAGTGATTATAGAAATTGCCTAAAACACAAGAAGAAAGATTTAACATTGCAAGAATTGATTACTCACATGTGCACACAAGAAGCAAATCGACAGAAAGATAAGCTTATCTCTATGAATTTAAATTTTGTTAATGCTAACCTGGTTGAGTCTTCTACTGTTAACAAAAATAGGTTAAAAAATAATAGCAAATAATATGTCAAAAATAATCCCTATAAGAAGAAGGAACATCACAAAGCTGCTAGTGGGAAGATAGAAAAGAAAAAATTGATATGCTATGTCTGTGGAAAATAAGGACACAAGTCCTACCAGTATAACCAGAGGAAAGGAAGGCTAGATCAACAATCGATCCCACAAGCCAATGTTGCTGAGCAAAATGAGATCATTGTTGTTGTGGTCGTGGAAGCCAACCTAGTAAAAACAAATCAAATTGGATTCTCGACACTAGAGCCTCAAGACAATTTCGCTCAAATTGAGAAATCTTCCACGACTTCTAAGATATTGCCGACGGAAAATGTGTGTTCATGGGTAACTCTGCTACGACAAGAGTACCTAAGAAAGAGAAGGTTCTCTTAAAACTTACTTCTGGTAAAACTTTATCATTAAGTGATGTGTTATATGTACCTTCGTTACGTAGGAACCTGGTATCACACCTCCTCCCAAGTTACCCTCTTTAACCTAGGAAAAGTTGTGAGGACAGGAGACATCAACCCTTTTACGATATTTATTGTCAACCTGTACTATCCTTGAATCATTTTTAAGCACCTGGTAGATAATTAATATTTCTTATCGAGACAACATGCTCTAAACTCAAGACAAACCAACATTTAAAAACTTCCATTCAACAGCCTAACATACCATAGATACATGTATATAGACTTCCACTCCTTCAAACCCCCTATGTATAATGCTGATCCTTAAGTACAAATATTTACAATATTTACAAACTAAGTAGCAGGCCTAGACGAGTAGGAAGTATTTGTTTTTCTTCTATAAGCTAGACCTTACTGAATTTCGAGGATGAAATTCTTTTAAGGAGGTGGTAAATTGTAAACCCTACTTCCATCCTTCTAGTATCTGATGGATTAATGAGCATGCAGCAGAAGTTAATTTGATCAATTTTCACTCTAAGATGCTCAATTTAGAGGATTAAACATGCAATTAAGAAGAAAAACCAAAGTTTCAAGAACACTTACCCTTGAAGCTCCAAATTCTCCTTCAATTCTTGATGAATTTCAGCACCACTTGGTTGTAGACCACCACAAGAGTCTTCTCTACTATTCTCTAGGCTTAGATTGGATGGTGGGATCCAAATTTGTGGTGAATTTGAGAAAGAATGAAGGTTGGGAAGAAGATGAACAATGGATAAAATTTTGCAAAATTAACCCTTAATTTCACAAAATTCTTAACCATTTTTATGTCAAAATCATCTCTATTTATTAAAGAATAACATGCAATCCAATTGCATCAAAATTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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TGGTTTGTCTTGAGTTAGAGCATGTTGTCTGGATGAGAAATATTAACTGTTTATCAGGTGTTTAGAAATCATTCGAGGATAGTACAGGTTGACAATACATGTCGTAAAACGGTCGATGTCTGCTGTCCTCACACCTTTTCCTAGGTTAAAGAGGGTAACTTGGGAGGAGGTGTGGCACCTAGTCTCTGGAAGTTTGTTGAACTAGGCTAGGATTAAAATTGTACTAGAGGCTGACAAGGTTATTCTCACAAAAAATGGTAACTTTGTTGGTAAAGGGTACTTACCTTATTGTCTTTTCGTTTTAAACATCATTAATGTTGCTTCTAAGATGAATAAAATTGCTTCTAGTTCTACTTATATCGATGAATCGATTGATTTGTGGCATGGTAGATTAGGTCATGTGATTGTTGCACTGATTAAGAAACTCAAAGAATTAAACCTTATCAATGCATCTAAATCACATGAAAATGGAAAATGTCCAATATGTGTAAAAGAAAAGTTCCCTAAAAAAACCTTTTAAACTTGTGAATACTAGGGGCACATAATTACTTAAATTGATTCATTCTGATTTAGTTGATTTCAAAATACTACAAGTAGAGGTGGTAAAAATTACTATATATCTTTTGTTGATGATTTTTCTAGATACACTAAAATTTATCTTTTTAAAACAAAGGATGAAGCTGACAATATGTTTTGAAATATAAAGTAGAAGTAGAGAATCATATAGACAAAAGAATTAAAAGGTTAAAGTTAGATAGAGGTGGTGAATATAGTGATAAATCTCTTAAAAAATTTTGTGAATCAAATGACATTATTCATGAATTGACTGCACCTAATTCACCACAAAAAATGATATAACTGAACAAAAAAAATCGAACAATTAAAGAGATGTTGAATGCTACATTTTTTAGTTTTGAATTGTCTGACAATATGTGGGGAGAAGCTGCACTTTTTGCCTGTTTCATTCTTTACAGGATTCCTCACAAAAAGTTGAATAAAACGCCATACGAACTATGGAGAGGTTATGCATCTAATCTCAATTACCTAAAAGAGGGGGGGTGTTTGGCTAAGGTAGTGTATCCTACATTCAAGAAACCTACAGTAGGATCTAAAATCTTTGACTGTGTTTTCATTACTTATGCCCATAATAGTGTTTCATATAGATTTATGTGCCTAAATGATAAATCAATATGTGAGTATAAAGATGCTGAATTTTTTGAGCATATATTTCCTATGATCAAGGTAGATAATGAATTAATTAAAACATCCAATGGTGACAAAAGATATGCATCTTTACCTTCTTCTTTTGAAAGTATTAGGGTTGGCAACGGGACTGGGGCGGGGCGGGGATTCCCCATTAGGGAGTCGGGTCCTCGTGGGGGCCCCATTCCCCACGAGATTTGA

mRNA sequence

ATGGATCCAAATAGCTCCAAAGTCACAGATTCGTTAGAATCTGGTCAGTCCAGATTCGAACCTATTGTAGATCCAAACAAATTTGAGAAAGATAACAAGGCAGTCTGTGACCATTTGCTCAATCATATGACGGACTCGTTATTCGATTTATTCGTGGTCCAGAAGTCAACAAAGGTGATATGGGACACTCTGGAATCTAGCTTGAGAAAGAAAAGATTGGGTGCCATGAAGAGGAATGGCGAGAGCTACTTTGTCATGAAGGTTGGCAACGGGACTGGGGCGGGGCGGGGATTCCCCATTAGGGAGTCGGGTCCTCGTGGGGGCCCCATTCCCCACGAGATTTGA

Coding sequence (CDS)

ATGGATCCAAATAGCTCCAAAGTCACAGATTCGTTAGAATCTGGTCAGTCCAGATTCGAACCTATTGTAGATCCAAACAAATTTGAGAAAGATAACAAGGCAGTCTGTGACCATTTGCTCAATCATATGACGGACTCGTTATTCGATTTATTCGTGGTCCAGAAGTCAACAAAGGTGATATGGGACACTCTGGAATCTAGCTTGAGAAAGAAAAGATTGGGTGCCATGAAGAGGAATGGCGAGAGCTACTTTGTCATGAAGGTTGGCAACGGGACTGGGGCGGGGCGGGGATTCCCCATTAGGGAGTCGGGTCCTCGTGGGGGCCCCATTCCCCACGAGATTTGA

Protein sequence

MDPNSSKVTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKVIWDTLESSLRKKRLGAMKRNGESYFVMKVGNGTGAGRGFPIRESGPRGGPIPHEI
BLAST of ClCG11G008750 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query: 2   DPNSSK--VTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKV 61
           DP SS   +T    + Q + + ++DP K+ KDNK V  HLLNHM+D +FDLFVVQKS K 
Sbjct: 62  DPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKD 121

Query: 62  IWDTLES 67
           IW TLES
Sbjct: 122 IWSTLES 128

BLAST of ClCG11G008750 vs. NCBI nr
Match: gi|659090008|ref|XP_008445782.1| (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query: 2   DPNSSK--VTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKV 61
           DP SS   +T    + Q + + ++DP K+ KDNK V  HLLNHM+D +FDLFVVQKS K 
Sbjct: 62  DPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKD 121

Query: 62  IWDTLES 67
           IW TLES
Sbjct: 122 IWSTLES 128

BLAST of ClCG11G008750 vs. NCBI nr
Match: gi|307135946|gb|ADN33807.1| (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query: 2   DPNSSK--VTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKV 61
           DP SS   +T    + Q + + ++DP K+ KDNK V  HLLNHM+D +FDLFVVQKS K 
Sbjct: 62  DPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKD 121

Query: 62  IWDTLES 67
           IW TLES
Sbjct: 122 IWSTLES 128

BLAST of ClCG11G008750 vs. NCBI nr
Match: gi|659126166|ref|XP_008463045.1| (PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1

Query: 2   DPNSSK--VTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKV 61
           DP SS   +T    + Q + + ++DP K+ KDNK V  HLLNHM+D +FDLF VQKS K 
Sbjct: 62  DPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKE 121

Query: 62  IWDTLES 67
           IW TLES
Sbjct: 122 IWSTLES 128

BLAST of ClCG11G008750 vs. NCBI nr
Match: gi|659113205|ref|XP_008456453.1| (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-10
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1

Query: 8   VTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKVIWDTLES 67
           VTD ++  Q     ++DP K+ KDNK V  HLLNHM+D +FDLFVVQKS K IW TLES
Sbjct: 75  VTDQVKKDQ-----VIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLES 128

BLAST of ClCG11G008750 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1

Query: 3   PNSSKVTDSLESGQSRFEPIVDPNKFEKDNKAVCDHLLNHMTDSLFDLFVVQKSTKVIWD 62
           P +  VTD ++  Q     ++DP K+ KDNK V  HLLNHM+D +F+LFVVQK TK IW 
Sbjct: 70  PTTVAVTDQVKKDQ-----VIDPEKYAKDNKTVRGHLLNHMSDPMFNLFVVQKFTKDIWS 128

Query: 63  TLES 67
           TLES
Sbjct: 130 TLES 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBG5_CUCME1.8e-1055.22Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659090008|ref|XP_008445782.1|1.5e-1055.22PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo][more]
gi|307135946|gb|ADN33807.1|2.6e-1055.22ty1-copia retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659126166|ref|XP_008463045.1|4.4e-1053.73PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo][more]
gi|659113205|ref|XP_008456453.1|7.5e-1059.32PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo][more]
gi|659102488|ref|XP_008452160.1|9.8e-1054.69PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G008750.1ClCG11G008750.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G008750Cla011978Watermelon (97103) v1wcgwmB104
The following gene(s) are paralogous to this gene:

None