ClCG11G008700 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008700
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr11 : 12632128 .. 12632418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCAAGAACACCAAGAATCCCAACCCACCCACTGTAGATGTGGAAGCATCCTCATCCTCTCCTCAATCTCTCAACCGGCGTCTAACTTATGTGGAAACATCACTCAAAGAGCAGAACGCTCAACTGTTGGATGTACAATCTAAGATGGTTGATCTCATGGCTTTGATGGCTAGAATTCAACAAGCTATAGAATTCCTCACCCAAGAGAAAGGTAAGGCGACTTCTGCCTCTATCCAAGCACAGAATGCCAAACCACAACCCTTTGTGCATTCAAGAACAAAGTAA

mRNA sequence

ATGGTGACCAAGAACACCAAGAATCCCAACCCACCCACTGTAGATGTGGAAGCATCCTCATCCTCTCCTCAATCTCTCAACCGGCGTCTAACTTATGTGGAAACATCACTCAAAGAGCAGAACGCTCAACTGTTGGATGTACAATCTAAGATGGTTGATCTCATGGCTTTGATGGCTAGAATTCAACAAGCTATAGAATTCCTCACCCAAGAGAAAGGTAAGGCGACTTCTGCCTCTATCCAAGCACAGAATGCCAAACCACAACCCTTTGTGCATTCAAGAACAAAGTAA

Coding sequence (CDS)

ATGGTGACCAAGAACACCAAGAATCCCAACCCACCCACTGTAGATGTGGAAGCATCCTCATCCTCTCCTCAATCTCTCAACCGGCGTCTAACTTATGTGGAAACATCACTCAAAGAGCAGAACGCTCAACTGTTGGATGTACAATCTAAGATGGTTGATCTCATGGCTTTGATGGCTAGAATTCAACAAGCTATAGAATTCCTCACCCAAGAGAAAGGTAAGGCGACTTCTGCCTCTATCCAAGCACAGAATGCCAAACCACAACCCTTTGTGCATTCAAGAACAAAGTAA

Protein sequence

MVTKNTKNPNPPTVDVEASSSSPQSLNRRLTYVETSLKEQNAQLLDVQSKMVDLMALMARIQQAIEFLTQEKGKATSASIQAQNAKPQPFVHSRTK

Homology

[Close]

BLAST of ClCG11G008700 vs. TrEMBL
Match: A0A0A0KE02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G416830 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-12
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 22 SPQSLNRRLTYVETSLKEQNAQLLDVQSKMVDLMALMARIQQAIEFLTQEKGKATSASIQ 81
          SPQS N RL +VE  LK +  +LLDVQSKMV ++A +A IQ+AIE LTQ+KGK+T+A +Q
Sbjct: 8  SPQSFNWRLNHVEQPLKSKIHRLLDVQSKMVGILASVAEIQRAIELLTQDKGKSTAAPVQ 67

Query: 82 AQNAKPQP 90
          A N+ P P
Sbjct: 68 APNSNPLP 75

[Close]

BLAST of ClCG11G008700 vs. NCBI nr
Match: gi|700192726|gb|KGN47930.1| (hypothetical protein Csa_6G416830 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.2e-12
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 22 SPQSLNRRLTYVETSLKEQNAQLLDVQSKMVDLMALMARIQQAIEFLTQEKGKATSASIQ 81
          SPQS N RL +VE  LK +  +LLDVQSKMV ++A +A IQ+AIE LTQ+KGK+T+A +Q
Sbjct: 8  SPQSFNWRLNHVEQPLKSKIHRLLDVQSKMVGILASVAEIQRAIELLTQDKGKSTAAPVQ 67

Query: 82 AQNAKPQP 90
          A N+ P P
Sbjct: 68 APNSNPLP 75

The following BLAST results are available for this feature:

BLAST of ClCG11G008700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE02_CUCSA	3.6e-12	58.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G416830 PE=4 SV=1	[more]

BLAST of ClCG11G008700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192726\|gb\|KGN47930.1\|	5.2e-12	58.82	hypothetical protein Csa_6G416830 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008700.1	ClCG11G008700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 51..71 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G008700	Cla011969	Watermelon (97103) v1	wcgwmB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008700	Wax gourd	wcgwgoB159
ClCG11G008700	Cucumber (Gy14) v1	cgywcgB099
ClCG11G008700	Cucurbita maxima (Rimu)	cmawcgB250
ClCG11G008700	Cucurbita moschata (Rifu)	cmowcgB238
ClCG11G008700	Cucurbita moschata (Rifu)	cmowcgB633
ClCG11G008700	Wild cucumber (PI 183967)	cpiwcgB103
ClCG11G008700	Cucumber (Chinese Long) v2	cuwcgB097
ClCG11G008700	Melon (DHL92) v3.5.1	mewcgB269
ClCG11G008700	Cucurbita pepo (Zucchini)	cpewcgB162
ClCG11G008700	Cucurbita pepo (Zucchini)	cpewcgB367
ClCG11G008700	Bottle gourd (USVL1VR-Ls)	lsiwcgB079
ClCG11G008700	Bottle gourd (USVL1VR-Ls)	lsiwcgB088
ClCG11G008700	Cucumber (Gy14) v2	cgybwcgB095
ClCG11G008700	Melon (DHL92) v3.6.1	medwcgB260
ClCG11G008700	Silver-seed gourd	carwcgB0023
ClCG11G008700	Silver-seed gourd	carwcgB0303
ClCG11G008700	Cucumber (Chinese Long) v3	cucwcgB113
ClCG11G008700	Watermelon (97103) v2	wcgwmbB067