ClCG11G008470 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G008470
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr11 : 12145821 .. 12146216 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGGTCCCTTTGGACGGCGCTGACGACGGCGATGGTAACTTCTTTGGCAACATCTGCTCCCAATATGGTCTGGGAACTCTGGCCGCGTCAGAGGAAACGGAAGCGAGAGTGAGAAGCAGTGTTAAGAAGAGAATGAATCTAAGGTTGAAAGAAAGTAACATGGTGATATGATGGGAGGTAGTGAATTTTGGATTTGAATTTAGAATGTTTGATGATGAAGTCTGAAAGGGAGGAGGAGGTTTTTGAGAGGGTATGGAAGGAGACATGGTGAGTAATGTAAGGAAAATGCCAACTAGTTTTGTTGTTGAAAAGGTGCGACAATGGCAGACAAAAGGGAAGCTGATTATTCTTGCCGATCATGTACCTCATGTTATGGCTTTCATTACCTAA

mRNA sequence

ATGGAGTTGGTCCCTTTGGACGGCGCTGACGACGGCGATGGTAACTTCTTTGGCAACATCTGCTCCCAATATGGTCTGGGAACTCTGGCCGCGTCAGAGGAAACGGAAGCGAGAGTGAGAAGCAGTGTTAAGAAGAGAATGAATCTAAGGTTGAAAGAAAGTAACATGGTGCGACAATGGCAGACAAAAGGGAAGCTGATTATTCTTGCCGATCATGTACCTCATGTTATGGCTTTCATTACCTAA

Coding sequence (CDS)

ATGGAGTTGGTCCCTTTGGACGGCGCTGACGACGGCGATGGTAACTTCTTTGGCAACATCTGCTCCCAATATGGTCTGGGAACTCTGGCCGCGTCAGAGGAAACGGAAGCGAGAGTGAGAAGCAGTGTTAAGAAGAGAATGAATCTAAGGTTGAAAGAAAGTAACATGGTGCGACAATGGCAGACAAAAGGGAAGCTGATTATTCTTGCCGATCATGTACCTCATGTTATGGCTTTCATTACCTAA

Protein sequence

MELVPLDGADDGDGNFFGNICSQYGLGTLAASEETEARVRSSVKKRMNLRLKESNMVRQWQTKGKLIILADHVPHVMAFIT
Homology
[Close]
BLAST of ClCG11G008470 vs. TrEMBL
Match: A0A0A0K3C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G219800 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-17
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 4   VPLDGADDGDGNFFGNICSQYGLGTLAASEETEARVRSSVKKRMNLRLKESNMV 58
           VPLDGADDG+GNF GNICSQYG+GTLAAS E E R R+SVKKRMNL+LKESNMV
Sbjct: 82  VPLDGADDGEGNFLGNICSQYGVGTLAASVEMEVRARTSVKKRMNLKLKESNMV 135

[Close]
BLAST of ClCG11G008470 vs. NCBI nr
Match: gi|700188962|gb|KGN44195.1| (hypothetical protein Csa_7G219800 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.9e-17
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 4   VPLDGADDGDGNFFGNICSQYGLGTLAASEETEARVRSSVKKRMNLRLKESNMV 58
           VPLDGADDG+GNF GNICSQYG+GTLAAS E E R R+SVKKRMNL+LKESNMV
Sbjct: 82  VPLDGADDGEGNFLGNICSQYGVGTLAASVEMEVRARTSVKKRMNLKLKESNMV 135

The following BLAST results are available for this feature:
BLAST of ClCG11G008470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3C9_CUCSA4.1e-1783.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G219800 PE=4 SV=1[more]
BLAST of ClCG11G008470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188962|gb|KGN44195.1|5.9e-1783.33hypothetical protein Csa_7G219800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G008470.1ClCG11G008470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G008470Cucurbita maxima (Rimu)cmawcgB620
ClCG11G008470Cucurbita moschata (Rifu)cmowcgB622
ClCG11G008470Wild cucumber (PI 183967)cpiwcgB112
ClCG11G008470Watermelon (97103) v1wcgwmB104
ClCG11G008470Cucurbita pepo (Zucchini)cpewcgB160
ClCG11G008470Cucurbita pepo (Zucchini)cpewcgB356
ClCG11G008470Cucumber (Gy14) v2cgybwcgB104
ClCG11G008470Silver-seed gourdcarwcgB0020
ClCG11G008470Watermelon (97103) v2wcgwmbB067
ClCG11G008470Wax gourdwcgwgoB159
ClCG11G008470Cucumber (Gy14) v1cgywcgB097