ClCG11G008460 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008460
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr11 : 12145754 .. 12146092 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAA

mRNA sequence

ATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAA

Coding sequence (CDS)

ATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAA

Protein sequence

MSPSIPSQKPPPPFQTSSSNILNSNPKFTTSHHITMLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

Homology

[Close]

BLAST of ClCG11G008460 vs. TrEMBL
Match: W9S9P5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012616 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.0e-13
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 46  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRN 105
           LFLTL+  L  + S+A+R+P+  WEQMLPKKLPSP+S+PSKGTNS++  SSSK + V +N
Sbjct: 10  LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 106 LPAKDGNV 113
           LP+ DG V
Sbjct: 70  LPSSDGKV 76

[Close]

BLAST of ClCG11G008460 vs. TrEMBL
Match: A0A0S3RNK5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G214100 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           M  S+  + +LF  L + L S   + +R+P+ YWEQMLPKKLPSPSS+PSKGTNS+ PSS
Sbjct: 1   MKASWKHQCLLFTLLAIVLLS---EGSRLPKEYWEQMLPKKLPSPSSSPSKGTNSVTPSS 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           S  ME +  LP  DG V
Sbjct: 61  SSTME-NHGLPTSDGKV 73

[Close]

BLAST of ClCG11G008460 vs. TrEMBL
Match: A0A0B2Q2G7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_046184 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-11
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 50  LLLTLAS--VSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPA 109
           LLLTL +  V S+ +R+P+ YWEQM+PKKLPSPSS+PSKGTNS++PSSS   + +  LP 
Sbjct: 11  LLLTLLAFVVLSEGSRLPKEYWEQMMPKKLPSPSSSPSKGTNSVSPSSSLTTK-NDGLPM 70

Query: 110 KDGNV 113
            DG V
Sbjct: 71  SDGKV 74

[Close]

BLAST of ClCG11G008460 vs. TrEMBL
Match: A0A164XQK9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016721 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 48  LTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPA 107
           L L L    VS+ A+R+P+  WEQM+PKKLP+PSSAPSKGTNS+A ++  + E  + L +
Sbjct: 9   LILCLLAFIVSAQASRLPKASWEQMMPKKLPTPSSAPSKGTNSVATATISSSESKQKLRS 68

Query: 108 KDGNV 113
            D NV
Sbjct: 69  ADKNV 73

[Close]

BLAST of ClCG11G008460 vs. TrEMBL
Match: K4BT14_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 44  FILFLTLLLTLASVSSDAARVPRPY--WEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEV 103
           FILF ++++      S+ +R+P+    WEQMLPKKLPSPSSAPSKGTNS+  SS+K  ++
Sbjct: 11  FILFFSIVV------SEGSRLPKASTTWEQMLPKKLPSPSSAPSKGTNSVTTSSTKT-KI 70

Query: 104 SRNLPAKDGNV 113
           +R + + DG V
Sbjct: 71  NRKMSSDDGRV 74

[Close]

BLAST of ClCG11G008460 vs. NCBI nr
Match: gi|703158592|ref|XP_010112030.1| (hypothetical protein L484_012616 [Morus notabilis])

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-13
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 46  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRN 105
           LFLTL+  L  + S+A+R+P+  WEQMLPKKLPSP+S+PSKGTNS++  SSSK + V +N
Sbjct: 10  LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 106 LPAKDGNV 113
           LP+ DG V
Sbjct: 70  LPSSDGKV 76

[Close]

BLAST of ClCG11G008460 vs. NCBI nr
Match: gi|965666684|dbj|BAT82172.1| (hypothetical protein VIGAN_03214100 [Vigna angularis var. angularis])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           M  S+  + +LF  L + L S   + +R+P+ YWEQMLPKKLPSPSS+PSKGTNS+ PSS
Sbjct: 1   MKASWKHQCLLFTLLAIVLLS---EGSRLPKEYWEQMLPKKLPSPSSSPSKGTNSVTPSS 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           S  ME +  LP  DG V
Sbjct: 61  SSTME-NHGLPTSDGKV 73

[Close]

BLAST of ClCG11G008460 vs. NCBI nr
Match: gi|734360939|gb|KHN15525.1| (hypothetical protein glysoja_046184 [Glycine soja])

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 50  LLLTLAS--VSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPA 109
           LLLTL +  V S+ +R+P+ YWEQM+PKKLPSPSS+PSKGTNS++PSSS   + +  LP 
Sbjct: 11  LLLTLLAFVVLSEGSRLPKEYWEQMMPKKLPSPSSSPSKGTNSVSPSSSLTTK-NDGLPM 70

Query: 110 KDGNV 113
            DG V
Sbjct: 71  SDGKV 74

[Close]

BLAST of ClCG11G008460 vs. NCBI nr
Match: gi|1021035693|gb|KZM93476.1| (hypothetical protein DCAR_016721 [Daucus carota subsp. sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 48  LTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPA 107
           L L L    VS+ A+R+P+  WEQM+PKKLP+PSSAPSKGTNS+A ++  + E  + L +
Sbjct: 9   LILCLLAFIVSAQASRLPKASWEQMMPKKLPTPSSAPSKGTNSVATATISSSESKQKLRS 68

Query: 108 KDGNV 113
            D NV
Sbjct: 69  ADKNV 73

[Close]

BLAST of ClCG11G008460 vs. NCBI nr
Match: gi|604322060|gb|EYU32478.1| (hypothetical protein MIMGU_mgv1a015916mg [Erythranthe guttata])

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 59  SDAARVPRPY-WEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDG 111
           S+A R+P  Y +EQMLPKKLP PSSAPS+GTNS++ +SS+++EV R LP+ DG
Sbjct: 2   SEATRLPNAYLFEQMLPKKLPVPSSAPSRGTNSVS-TSSRSVEVDRELPSSDG 53

The following BLAST results are available for this feature:

BLAST of ClCG11G008460 vs. TrEMBL


Match Name	E-value	Identity	Description
W9S9P5_9ROSA	5.0e-13	60.29	Uncharacterized protein OS=Morus notabilis GN=L484_012616 PE=4 SV=1	[more]
A0A0S3RNK5_PHAAN	1.1e-12	54.55	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G214100 PE=...	[more]
A0A0B2Q2G7_GLYSO	3.6e-11	60.00	Uncharacterized protein OS=Glycine soja GN=glysoja_046184 PE=4 SV=1	[more]
A0A164XQK9_DAUCA	2.6e-09	52.31	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016721 PE=4 SV=1	[more]
K4BT14_SOLLC	1.3e-08	50.70	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of ClCG11G008460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703158592\|ref\|XP_010112030.1\|	7.1e-13	60.29	hypothetical protein L484_012616 [Morus notabilis]	[more]
gi\|965666684\|dbj\|BAT82172.1\|	1.6e-12	54.55	hypothetical protein VIGAN_03214100 [Vigna angularis var. angularis]	[more]
gi\|734360939\|gb\|KHN15525.1\|	5.1e-11	60.00	hypothetical protein glysoja_046184 [Glycine soja]	[more]
gi\|1021035693\|gb\|KZM93476.1\|	3.7e-09	52.31	hypothetical protein DCAR_016721 [Daucus carota subsp. sativus]	[more]
gi\|604322060\|gb\|EYU32478.1\|	5.3e-08	62.26	hypothetical protein MIMGU_mgv1a015916mg [Erythranthe guttata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008460.1	ClCG11G008460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G008460	Cla011944	Watermelon (97103) v1	wcgwmB104
ClCG11G008460	Cla97C11G215070	Watermelon (97103) v2	wcgwmbB067

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008460	Cucurbita pepo (Zucchini)	cpewcgB160
ClCG11G008460	Cucurbita pepo (Zucchini)	cpewcgB356
ClCG11G008460	Cucumber (Gy14) v2	cgybwcgB104
ClCG11G008460	Silver-seed gourd	carwcgB0020
ClCG11G008460	Wax gourd	wcgwgoB159
ClCG11G008460	Cucumber (Gy14) v1	cgywcgB097
ClCG11G008460	Cucurbita maxima (Rimu)	cmawcgB620
ClCG11G008460	Cucurbita moschata (Rifu)	cmowcgB622
ClCG11G008460	Wild cucumber (PI 183967)	cpiwcgB112