ClCG11G007270 (gene) Watermelon (Charleston Gray)

NameClCG11G007270
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass, expressed
LocationCG_Chr11 : 8179988 .. 8180482 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACGCCACTAAGCAAGATTTGCCTGCAGATCCCATCACACTCACACCCTCTTCATCTATTCAAAACAATCCTGATCCCAATACCAGCCCTGAAATACAACTTGACCCAAATAGATATCAAGTCTGATCTGGGACAATGCTAGTTGAAATTCCCAACTTCACAAACCTTTTAAATCAGGTAATGTCGATTAAACATGACAAAGGAAACTTCCTCCTTTGGCAGAATATCGTGATGCCCATCCTAAGAAGCTATCAGCTAGAAGGCCATTTAACGAGAGCAACCCCTCCTCTTGACCAGTTAATCGTCATACCACCATGTGAAGATGAACCTAAGGGTCTTCTACTACCTAATCTTGAGTATGACATATGGCTGGCTGCTGATCACCTCATTGTGGGTTGGCTGTATAACTCAATGACCCCAACAATTGTAGCCCAAGTCATGGGGCACGATGAAGCAAAAGCTCTTTGGGAGTCAATACAAGCATACTAG

mRNA sequence

ATGGCCGACGCCACTAAGCAAGATTTGCCTGCAGATCCCATCACACTCACACCCTCTTCATCTATTCAAAACAATCCTGATCCCAATACCAGCCCTGAAATACAACTTGACCCAAATAGATATCAAAATATCGTGATGCCCATCCTAAGAAGCTATCAGCTAGAAGGCCATTTAACGAGAGCAACCCCTCCTCTTGACCAGTTAATCGTCATACCACCATGTGAAGATGAACCTAAGGGTCTTCTACTACCTAATCTTGAGTATGACATATGGCTGGCTGCTGATCACCTCATTGTGGGTTGGCTGTATAACTCAATGACCCCAACAATTGTAGCCCAAGTCATGGGGCACGATGAAGCAAAAGCTCTTTGGGAGTCAATACAAGCATACTAG

Coding sequence (CDS)

ATGGCCGACGCCACTAAGCAAGATTTGCCTGCAGATCCCATCACACTCACACCCTCTTCATCTATTCAAAACAATCCTGATCCCAATACCAGCCCTGAAATACAACTTGACCCAAATAGATATCAAAATATCGTGATGCCCATCCTAAGAAGCTATCAGCTAGAAGGCCATTTAACGAGAGCAACCCCTCCTCTTGACCAGTTAATCGTCATACCACCATGTGAAGATGAACCTAAGGGTCTTCTACTACCTAATCTTGAGTATGACATATGGCTGGCTGCTGATCACCTCATTGTGGGTTGGCTGTATAACTCAATGACCCCAACAATTGTAGCCCAAGTCATGGGGCACGATGAAGCAAAAGCTCTTTGGGAGTCAATACAAGCATACTAG

Protein sequence

MADATKQDLPADPITLTPSSSIQNNPDPNTSPEIQLDPNRYQNIVMPILRSYQLEGHLTRATPPLDQLIVIPPCEDEPKGLLLPNLEYDIWLAADHLIVGWLYNSMTPTIVAQVMGHDEAKALWESIQAY
BLAST of ClCG11G007270 vs. TrEMBL
Match: A0A0A0M380_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659080 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1

Query: 85  NLEYDIWLAADHLIVGWLYNSMTPTIVAQVMGHDEAKALWESIQ 129
           NLE++ W+ AD L++GWLYNS+TP +  Q++G + AK LWE+ Q
Sbjct: 20  NLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQ 63

BLAST of ClCG11G007270 vs. NCBI nr
Match: gi|700211590|gb|KGN66686.1| (hypothetical protein Csa_1G659080 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-06
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1

Query: 85  NLEYDIWLAADHLIVGWLYNSMTPTIVAQVMGHDEAKALWESIQ 129
           NLE++ W+ AD L++GWLYNS+TP +  Q++G + AK LWE+ Q
Sbjct: 20  NLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQ 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0M380_CUCSA4.0e-0652.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700211590|gb|KGN66686.1|5.7e-0652.27hypothetical protein Csa_1G659080 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G007270.1ClCG11G007270.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None