ClCG11G006920 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G006920
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	alpha/beta-Hydrolases superfamily protein LENGTH=324
Location	CG_Chr11 : 7697712 .. 7698972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTTACAAATGGTCATATGATTGATGATGTTGATGGAGTTGAATATGACCAACCAACATGGGAGGTTTTAGCATAAATGTCAATAGTGGACTTGATGTCACTTGGCGTAGATATGAGAGCAAATCAATTAAAAATAATATATAGACATCCTAATCTAATACCATTAGAATCGATAAAGTATAGGATCGATAAAGTATATGCATTCCCCATTCCTAATGAACGAGTTATGAATTTGATGTTTTCAATCACAATCTTGCTCCCGAACTCGTTAATGTAGGTAAGATAGACTTGGATAGAGACTTGAATGTACAACACCACCCTGTGATGATAAGATTTTAGAACAGAAACAGACAATGAATTTGAGGAGTTGGACTTTGATGGTCGTGAACTTGAGGAGTTGGACTTTGATGGTCGAACTTGAGGAGTTGGACTTTGATGGTCGTGAATATGATATACCTTCATATACATTCACTGATCTGGGAGAACATGACTCAATTGTATCGCTTGTGGTTGATGACAATACTCAATTGTATAAAGGCATGATTTGTCAAGACAAAGCAATGCTACAATATTTGGTCAAGTGTTTTGCTATTAACTGTCACACACCATATGAGGTCACACACCATATGAGGTCGTGGAATCAACACCGAAGATTTGGACAATTCAAGAGCCTCATAAACTTACATGACCAAGGCACATGCAATACAGATTACAAAAATGTACATTGCTAGATGAAATCATACAAGAATTTCAAGATTATTCACAAATCACAATATCGACCATTCATACTGTGATTTCAAACCCAAATTTTCACATCCAAATTGCAATTCCCAATAGTTGTTTCATACTGCGAAGTGTCATGGACGCGATTGAACACAACACCATCAACATTAATAACATCAAAATGCATATTACCTCTATAGGCATTGGCCCCATCATTCTTCTTCTCTACAACTTCCCTGAGCTCTGGTACTCATGGTGCCACCAACTTTTTGTACATTTCTTTCATCATATATCGAGCCATCACTTTAAACCTTCGCAACTATGGCAACACCAACTCCCCTAAATTGCATTCTTCTTCCACCACGCTTCATATCGTCGGCGATTTCATTGGGGCTTTGGATGAGCTTGGCAATTTTCAGAAGCTAGCTGCGTAATGGAATTTAAGAGAGGGTGATGGATTTCAAGAGAGGGTTGCTTCCTGGCGGCTACTTCCTACATATAAGAGAAATCAAGAGAGGGAGAAGATAATTTAG

mRNA sequence

ATGTTGTTTACAAATGGTCATATGATTGATGATGTTGATGGAGTTGAATATGACCAACCAACATGGGAGAGACTTGAATGTACAACACCACCCTGTGATGATAAGATTTTAGAACAGAAACAGACAATGAATTTGAGGAGTTGGACTTTGATGGTCGTGAACTTGAGGAGTTGGACTTTGATGGTCGAACTTGAGGAGTTGGACTTTGATGGTCGTGAATATGATATACCTTCATATACATTCACTGATCTGGGAGAACATGACTCAATTGTATCGCTTGTGGTTGATGACAATACTCAATTGTATAAAGGCATGATTTGTCAAGACAAAGCAATGCTACAATATTTGGTCAAGTGTTTTGCTATTAACTGTCACACACCATATGAGGCATTGGCCCCATCATTCTTCTTCTCTACAACTTCCCTGAGCTCTGGTACTCATGGTGCCACCAACTTTTTGTACATTTCTTTCATCATATATCGAGCCATCACTTTAAACCTTCGCAACTATGGCAACACCAACTCCCCTAAATTGCATTCTTCTTCCACCACGCTTCATATCGTCGGCGATTTCATTGGGGCTTTGGATGAGCTTGGCAATTTTCAGAAGCTAGCTGCGGTTGCTTCCTGGCGGCTACTTCCTACATATAAGAGAAATCAAGAGAGGGAGAAGATAATTTAG

Coding sequence (CDS)

ATGTTGTTTACAAATGGTCATATGATTGATGATGTTGATGGAGTTGAATATGACCAACCAACATGGGAGAGACTTGAATGTACAACACCACCCTGTGATGATAAGATTTTAGAACAGAAACAGACAATGAATTTGAGGAGTTGGACTTTGATGGTCGTGAACTTGAGGAGTTGGACTTTGATGGTCGAACTTGAGGAGTTGGACTTTGATGGTCGTGAATATGATATACCTTCATATACATTCACTGATCTGGGAGAACATGACTCAATTGTATCGCTTGTGGTTGATGACAATACTCAATTGTATAAAGGCATGATTTGTCAAGACAAAGCAATGCTACAATATTTGGTCAAGTGTTTTGCTATTAACTGTCACACACCATATGAGGCATTGGCCCCATCATTCTTCTTCTCTACAACTTCCCTGAGCTCTGGTACTCATGGTGCCACCAACTTTTTGTACATTTCTTTCATCATATATCGAGCCATCACTTTAAACCTTCGCAACTATGGCAACACCAACTCCCCTAAATTGCATTCTTCTTCCACCACGCTTCATATCGTCGGCGATTTCATTGGGGCTTTGGATGAGCTTGGCAATTTTCAGAAGCTAGCTGCGGTTGCTTCCTGGCGGCTACTTCCTACATATAAGAGAAATCAAGAGAGGGAGAAGATAATTTAG

Protein sequence

MLFTNGHMIDDVDGVEYDQPTWERLECTTPPCDDKILEQKQTMNLRSWTLMVVNLRSWTLMVELEELDFDGREYDIPSYTFTDLGEHDSIVSLVVDDNTQLYKGMICQDKAMLQYLVKCFAINCHTPYEALAPSFFFSTTSLSSGTHGATNFLYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELGNFQKLAAVASWRLLPTYKRNQEREKII

Homology

[Close]

BLAST of ClCG11G006920 vs. TrEMBL
Match: A0A0A0KT70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001920 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 153 LYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           LY+S + YRAI  +LR YG+T+SP  H+S T LHIVGD IGALDELG
Sbjct: 45  LYLSSVGYRAIAPDLRGYGDTDSPGSHTSYTALHIVGDLIGALDELG 91

[Close]

BLAST of ClCG11G006920 vs. TrEMBL
Match: A0A0A0KY86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001830 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 153 LYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           LY+S + YRAI  +LR +G+T++P+ H++ T  HIVGD +GALDELG
Sbjct: 45  LYLSSVGYRAIAPDLRGFGDTDAPESHTAYTAFHIVGDLVGALDELG 91

[Close]

BLAST of ClCG11G006920 vs. TAIR10
Match: AT4G02340.1 (AT4G02340.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 6.2e-06
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1


Query: 160 YRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           YRAI  +LR YG++++P    S T LHIVGD +G LD LG
Sbjct: 52  YRAIAPDLRGYGDSDAPPSRESYTILHIVGDLVGLLDSLG 91

[Close]

BLAST of ClCG11G006920 vs. NCBI nr
Match: gi|659113207|ref|XP_008456454.1| (PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 63  ELEELDFDGREYDIPSYTFT--------DLGEHDSIVSLVVDDNTQLYKGMICQDKAMLQ 122
           E EE+DFDG EY++PS TFT        D+ EHD I+  +V DNT+LY GMIC++K MLQ
Sbjct: 52  EFEEMDFDGCEYEVPSNTFTNLDMDAVDDIQEHDPIIVPMVIDNTKLYMGMICENKEMLQ 111

Query: 123 YLVKCFAINCHTPYEAL 132
           ++VKCFAI  H PYE +
Sbjct: 112 HMVKCFAIKSHAPYEVV 128

[Close]

BLAST of ClCG11G006920 vs. NCBI nr
Match: gi|659108665|ref|XP_008454323.1| (PREDICTED: bifunctional epoxide hydrolase 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1


Query: 153 LYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           LY+S + YRAI  +LR YG+T+SP+ H+S T LHIVGD +GALDELG
Sbjct: 45  LYLSSVGYRAIAPDLRGYGDTDSPESHTSYTALHIVGDLVGALDELG 91

[Close]

BLAST of ClCG11G006920 vs. NCBI nr
Match: gi|659108663|ref|XP_008454322.1| (PREDICTED: bifunctional epoxide hydrolase 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1


Query: 153 LYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           LY+S + YRAI  +LR YG+T+SP+ H+S T LHIVGD +GALDELG
Sbjct: 45  LYLSSVGYRAIAPDLRGYGDTDSPESHTSYTALHIVGDLVGALDELG 91

[Close]

BLAST of ClCG11G006920 vs. NCBI nr
Match: gi|449469066|ref|XP_004152242.1| (PREDICTED: bifunctional epoxide hydrolase 2-like isoform X1 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 153 LYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           LY+S + YRAI  +LR YG+T+SP  H+S T LHIVGD IGALDELG
Sbjct: 45  LYLSSVGYRAIAPDLRGYGDTDSPGSHTSYTALHIVGDLIGALDELG 91

[Close]

BLAST of ClCG11G006920 vs. NCBI nr
Match: gi|778689338|ref|XP_011652941.1| (PREDICTED: bifunctional epoxide hydrolase 2-like isoform X2 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 153 LYISFIIYRAITLNLRNYGNTNSPKLHSSSTTLHIVGDFIGALDELG 200
           LY+S + YRAI  +LR YG+T+SP  H+S T LHIVGD IGALDELG
Sbjct: 45  LYLSSVGYRAIAPDLRGYGDTDSPGSHTSYTALHIVGDLIGALDELG 91

The following BLAST results are available for this feature:

BLAST of ClCG11G006920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT70_CUCSA	2.2e-07	65.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001920 PE=4 SV=1	[more]
A0A0A0KY86_CUCSA	5.3e-06	55.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001830 PE=4 SV=1	[more]

BLAST of ClCG11G006920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02340.1	6.2e-06	55.00	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of ClCG11G006920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113207\|ref\|XP_008456454.1\|	2.4e-15	55.84	PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo]	[more]
gi\|659108665\|ref\|XP_008454323.1\|	1.8e-07	63.83	PREDICTED: bifunctional epoxide hydrolase 2-like isoform X2 [Cucumis melo]	[more]
gi\|659108663\|ref\|XP_008454322.1\|	1.8e-07	63.83	PREDICTED: bifunctional epoxide hydrolase 2-like isoform X1 [Cucumis melo]	[more]
gi\|449469066\|ref\|XP_004152242.1\|	3.1e-07	65.96	PREDICTED: bifunctional epoxide hydrolase 2-like isoform X1 [Cucumis sativus]	[more]
gi\|778689338\|ref\|XP_011652941.1\|	3.1e-07	65.96	PREDICTED: bifunctional epoxide hydrolase 2-like isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G006920.1	ClCG11G006920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 217..226 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G006920	Silver-seed gourd	carwcgB0019
ClCG11G006920	Silver-seed gourd	carwcgB0021
ClCG11G006920	Silver-seed gourd	carwcgB0985
ClCG11G006920	Cucumber (Chinese Long) v3	cucwcgB452
ClCG11G006920	Watermelon (97103) v2	wcgwmbB065
ClCG11G006920	Wax gourd	wcgwgoB158
ClCG11G006920	Cucumber (Gy14) v1	cgywcgB224
ClCG11G006920	Cucurbita maxima (Rimu)	cmawcgB252
ClCG11G006920	Cucurbita maxima (Rimu)	cmawcgB619
ClCG11G006920	Cucurbita maxima (Rimu)	cmawcgB630
ClCG11G006920	Cucurbita moschata (Rifu)	cmowcgB240
ClCG11G006920	Cucurbita moschata (Rifu)	cmowcgB621
ClCG11G006920	Cucurbita moschata (Rifu)	cmowcgB632
ClCG11G006920	Wild cucumber (PI 183967)	cpiwcgB450
ClCG11G006920	Cucumber (Chinese Long) v2	cuwcgB429
ClCG11G006920	Melon (DHL92) v3.5.1	mewcgB272
ClCG11G006920	Watermelon (97103) v1	wcgwmB108
ClCG11G006920	Cucurbita pepo (Zucchini)	cpewcgB159
ClCG11G006920	Cucurbita pepo (Zucchini)	cpewcgB355
ClCG11G006920	Cucurbita pepo (Zucchini)	cpewcgB366
ClCG11G006920	Bottle gourd (USVL1VR-Ls)	lsiwcgB226
ClCG11G006920	Cucumber (Gy14) v2	cgybwcgB397
ClCG11G006920	Melon (DHL92) v3.6.1	medwcgB263