ClCG11G003940 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G003940
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr11 : 4157965 .. 4159330 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGGGAGAGGATTTCCCTGGAGGATCTGGTGGTCCAGTCTCCACCTCTACTAAGGAGCTAAGCCTCAGTTGTTACCACGTTCTTGGTCTATTCTATGGGTGGTGCCTCAGATGTTTGTGTCACCTAAAGGTACTATAAATTCTTCTCTTTTTTGAGTGTTGTTCTCTTAAGACGACATCTCCACTTTGGCCGTCTCTAAGACCCCTTGACAATCAAAGGACTTAGAATAGTTTCTCTTATTGTGATTTAGATGGTTTTTTCTAACTCGGGGATGTGAACTTGTCGTCTTTGCTTCTTTACTTTGGTTGTTTGGTTCGTGTGTGAGCTCTAGCCTTAATATTTTGAAAAAAAATTAAAACTACTATATAAAAAGGAATCTACAAAGACAAATTATTTATTTACTTTCCAAAGAAGTCCTAATTCTTTATAAACAAAACAAAACCCCTAGCTAGCTAGCTTCTTTAATAGGCTCAGTTGTAAGCCCGAATCCTAGAGGGAAAAGCGGATTGTAATTCTCATCTCCATAGTTCATCGGAAGTTGATCCACCGTCTTGAACCACGTCCTCCCCAGCTTTCCGGTGAATCCATAGTCACCGAACAACACGTCGGTCACGCCCTCCCCCTCTGTTCCCGGCAGCCACGCTGCTACCAGCGCGTCCAACTGCGACATGCGCGGCTCAATCGTCAGAGGCCGGCCGGAGACGATGACAACGACACACTTCACAACGTTGCACACGTTCTGGATCGTGTCCGACCCTCCTTCGGCGATACTCAGATTCAGGTTGTCGCCATTGGTCTCGGCGTACGGCTTCTCTCCTACCACCACAATGGCGTACGAGAAGTTGTTCGCCTTGATGTAATCGGTCGTCGGATTTACATTGTAGATGACTTCCGTGTTTGGATACACGGTTTTCTTCACTGCCTCGAGAATGGTGGTTCCGGTTATGAGATTGTTGCCGCTCAGTCCTTGCCAGGTGATTGTCCAGCCGCCACATTGGTAACCTAAATTGTCGGCGTGAGTTCCGGCTACTAAGATCTTCGCTGCCTTCTTCGACAGAGGGATGACTGGTTCATCGGCATTTTCGCCATTCTTCAGTAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTTTGTGTTCCTGTTCAATTGAATTCGTATTTTATTCCAAATGATATTTCAATTTTACAACTACATTTCTTTATGTTTTCATGTCAATTAACCTGACTTCCAAGCTCATTTACAAATCTGTCATCGGCCAATGGATTCTCAAACAGGCCCATTACGAACTTGACTCTCAAAATTCTTCTCACGGCATCGTTGATTCGGGACATAGGAATGGCGTTGCTGTTGACA

mRNA sequence

ATGGATTTGATCCACCGTCTTGAACCACGTCCTCCCCAGCTTTCCGGTGAATCCATAGTCACCGAACAACACGTCGGTCACGCCCTCCCCCTCTGTTCCCGGCAGCCACGCTGCTACCAGCGCGTCCAACTGCGACATGCGCGGCTCAATCGTCAGAGGCCGGCCGGAGACGATGACAACGACACACTTCACAACGTTGCACACGTTCTGGATCGTGTCCGACCCTCCTTCGGCGATACTCAGATTCAGGTTGTCGCCATTGGTCTCGGCGTACGGCTTCTCTCCTACCACCACAATGGCGTACGAGAAGTTGTTCGCCTTGATGTAATCGGTCGTCGGATTTACATTGTAGATGACTTCCGTGTTTGGATACACGGTTTTCTTCACTGCCTCGAGAATGGTGGTTCCGGTTATGAGATTGTTGCCGCTCAGTCCTTGCCAGTTCCGGCTACTAAGATCTTCGCTGCCTTCTTCGACAGAGGGATGACTGGTTCATCGGCATTTTCGCCATTCTTCAGTAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTTTCTCATTTACAAATCTGTCATCGGCCAATGGATTCTCAAACAGGCCCATTACGAACTTGACTCTCAAAATTCTTCTCACGGCATCGTTGATTCGGGACATAGGAATGGCGTTGCTGTTGACA

Coding sequence (CDS)

ATGGATTTGATCCACCGTCTTGAACCACGTCCTCCCCAGCTTTCCGGTGAATCCATAGTCACCGAACAACACGTCGGTCACGCCCTCCCCCTCTGTTCCCGGCAGCCACGCTGCTACCAGCGCGTCCAACTGCGACATGCGCGGCTCAATCGTCAGAGGCCGGCCGGAGACGATGACAACGACACACTTCACAACGTTGCACACGTTCTGGATCGTGTCCGACCCTCCTTCGGCGATACTCAGATTCAGGTTGTCGCCATTGGTCTCGGCGTACGGCTTCTCTCCTACCACCACAATGGCGTACGAGAAGTTGTTCGCCTTGATGTAATCGGTCGTCGGATTTACATTGTAGATGACTTCCGTGTTTGGATACACGGTTTTCTTCACTGCCTCGAGAATGGTGGTTCCGGTTATGAGATTGTTGCCGCTCAGTCCTTGCCAGTTCCGGCTACTAAGATCTTCGCTGCCTTCTTCGACAGAGGGATGACTGGTTCATCGGCATTTTCGCCATTCTTCAGTAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTTTCTCATTTACAAATCTGTCATCGGCCAATGGATTCTCAAACAGGCCCATTACGAACTTGACTCTCAAAATTCTTCTCACGGCATCGTTGATTCGGGACATAGGAATGGCGTTGCTGTTGACA

Protein sequence

MDLIHRLEPRPPQLSGESIVTEQHVGHALPLCSRQPRCYQRVQLRHARLNRQRPAGDDDNDTLHNVAHVLDRVRPSFGDTQIQVVAIGLGVRLLSYHHNGVREVVRLDVIGRRIYIVDDFRVWIHGFLHCLENGGSGYEIVAAQSLPVPATKIFAAFFDRGMTGSSAFSPFFSRTSDFLTASLAKSFSFTNLSSANGFSNRPITNLTLKILLTASLIRDIGMALLLT
Homology
[Close]
BLAST of ClCG11G003940 vs. TrEMBL
Match: A0A0P0W314_ORYSJ (Os03g0749200 protein OS=Oryza sativa subsp. japonica GN=Os03g0749200 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 1 

Query: 3   LIHRLEPRPPQLSGESIVTEQHVGHALPLCSRQPRCYQRVQLRHARLNRQRPAGDDDNDT 62
           L+HR EP   QL+GE+++ EQHVG A+ L + +P   +RV     RL+ +R  GD+ +  
Sbjct: 10  LVHRFEPSTWQLAGEAVIPEQHVGDAVALRAGEPGGDERVHGADVRLHHERTPGDEHHHA 69

Query: 63  LHNVAHVLDRVRPSFGDTQIQVVAIGLGVRLLSYHHNGVREVVRLDVIGRRIYI----VD 122
           L   AHVLD +RP   D Q+QVV + L VRLL +HH+  R VV L  +G R  +    V 
Sbjct: 70  LDEPAHVLDHLRPRRRDGQVQVVPLRLRVRLLPHHHH--RVVVLLGALGDRALVRVLRVV 129

Query: 123 DFRVWIHGFLHCLEN 134
           D R  +H  L  L++
Sbjct: 130 DHRALVHRRLDRLQD 142

[Close]
BLAST of ClCG11G003940 vs. TrEMBL
Match: C4J0N1_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1 

Query: 148 VPATKIFAAFFDRGMTGSSAFSPFFSRTSDFLTASLAKSFS------FTNLSSANGFSNR 207
           +PAT+I AAF  RG +G+S   PF   TSD  TAS A+S           L S  GFSNR
Sbjct: 80  LPATRILAAFLGRGSSGASPGLPFLRSTSDLRTASRARSLCSCFPSWSARLGSGMGFSNR 139

Query: 208 PITNLTLKILLTASLIRDIGMALLLT 228
           P+ NLT +I +TAS I  IG+  LLT
Sbjct: 140 PMVNLTRRIRVTASSILLIGIRPLLT 165

[Close]
BLAST of ClCG11G003940 vs. NCBI nr
Match: gi|937911471|dbj|BAS86391.1| (Os03g0749200 [Oryza sativa Japonica Group])

HSP 1 Score: 93.6 bits (231), Expect = 4.8e-16
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 1 

Query: 3   LIHRLEPRPPQLSGESIVTEQHVGHALPLCSRQPRCYQRVQLRHARLNRQRPAGDDDNDT 62
           L+HR EP   QL+GE+++ EQHVG A+ L + +P   +RV     RL+ +R  GD+ +  
Sbjct: 10  LVHRFEPSTWQLAGEAVIPEQHVGDAVALRAGEPGGDERVHGADVRLHHERTPGDEHHHA 69

Query: 63  LHNVAHVLDRVRPSFGDTQIQVVAIGLGVRLLSYHHNGVREVVRLDVIGRRIYI----VD 122
           L   AHVLD +RP   D Q+QVV + L VRLL +HH+  R VV L  +G R  +    V 
Sbjct: 70  LDEPAHVLDHLRPRRRDGQVQVVPLRLRVRLLPHHHH--RVVVLLGALGDRALVRVLRVV 129

Query: 123 DFRVWIHGFLHCLEN 134
           D R  +H  L  L++
Sbjct: 130 DHRALVHRRLDRLQD 142

[Close]
BLAST of ClCG11G003940 vs. NCBI nr
Match: gi|238007392|gb|ACR34731.1| (unknown [Zea mays])

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1 

Query: 148 VPATKIFAAFFDRGMTGSSAFSPFFSRTSDFLTASLAKSFS------FTNLSSANGFSNR 207
           +PAT+I AAF  RG +G+S   PF   TSD  TAS A+S           L S  GFSNR
Sbjct: 80  LPATRILAAFLGRGSSGASPGLPFLRSTSDLRTASRARSLCSCFPSWSARLGSGMGFSNR 139

Query: 208 PITNLTLKILLTASLIRDIGMALLLT 228
           P+ NLT +I +TAS I  IG+  LLT
Sbjct: 140 PMVNLTRRIRVTASSILLIGIRPLLT 165

The following BLAST results are available for this feature:
BLAST of ClCG11G003940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0W314_ORYSJ3.3e-1641.48Os03g0749200 protein OS=Oryza sativa subsp. japonica GN=Os03g0749200 PE=4 SV=1[more]
C4J0N1_MAIZE1.5e-0848.84Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of ClCG11G003940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937911471|dbj|BAS86391.1|4.8e-1641.48Os03g0749200 [Oryza sativa Japonica Group][more]
gi|238007392|gb|ACR34731.1|2.2e-0848.84unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G003940.1ClCG11G003940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G003940Cp4.1LG16g02830Cucurbita pepo (Zucchini)cpewcgB251
ClCG11G003940Carg25950Silver-seed gourdcarwcgB0422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G003940Watermelon (Charleston Gray)wcgwcgB063
ClCG11G003940Cucumber (Gy14) v1cgywcgB155
ClCG11G003940Cucumber (Gy14) v1cgywcgB642
ClCG11G003940Cucurbita maxima (Rimu)cmawcgB477
ClCG11G003940Cucurbita maxima (Rimu)cmawcgB517
ClCG11G003940Cucurbita moschata (Rifu)cmowcgB455
ClCG11G003940Cucurbita moschata (Rifu)cmowcgB476
ClCG11G003940Cucurbita moschata (Rifu)cmowcgB515
ClCG11G003940Wild cucumber (PI 183967)cpiwcgB111
ClCG11G003940Wild cucumber (PI 183967)cpiwcgB563
ClCG11G003940Cucumber (Chinese Long) v2cuwcgB104
ClCG11G003940Cucumber (Chinese Long) v2cuwcgB534
ClCG11G003940Melon (DHL92) v3.5.1mewcgB081
ClCG11G003940Melon (DHL92) v3.5.1mewcgB190
ClCG11G003940Watermelon (97103) v1wcgwmB101
ClCG11G003940Watermelon (97103) v1wcgwmB107
ClCG11G003940Cucurbita pepo (Zucchini)cpewcgB229
ClCG11G003940Cucurbita pepo (Zucchini)cpewcgB634
ClCG11G003940Bottle gourd (USVL1VR-Ls)lsiwcgB039
ClCG11G003940Bottle gourd (USVL1VR-Ls)lsiwcgB085
ClCG11G003940Cucumber (Gy14) v2cgybwcgB495
ClCG11G003940Cucumber (Gy14) v2cgybwcgB103
ClCG11G003940Melon (DHL92) v3.6.1medwcgB080
ClCG11G003940Melon (DHL92) v3.6.1medwcgB186
ClCG11G003940Silver-seed gourdcarwcgB0307
ClCG11G003940Cucumber (Chinese Long) v3cucwcgB120
ClCG11G003940Cucumber (Chinese Long) v3cucwcgB558
ClCG11G003940Watermelon (97103) v2wcgwmbB065
ClCG11G003940Watermelon (97103) v2wcgwmbB068
ClCG11G003940Wax gourdwcgwgoB167