ClCG10G016890 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G016890
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	MYB transcription factor
Location	CG_Chr10 : 31550652 .. 31550909 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCATGCTAAGAAATTTTCAACTGCGAGCTTAGTTCCACACAAATCTCAAGGTGCTGAACAAGGTGCGAGTGTTGCGGTTCTTGGTGGCTCTACAGCCAAAAGTCCAATGCCACCTGGAGGAGGTGGAAAACAACGCTTGCGATGGACATCAGATCTTCATGACCGTTTCGTTGATGCCATCACACAACTTGGTGGACCAGATAGTGGGTATTTTCTTTATAGTAATGTTAAAATGCATTTGCTTTCATCTTAA

mRNA sequence

ATGTATCATGCTAAGAAATTTTCAACTGCGAGCTTAGTTCCACACAAATCTCAAGGTGCTGAACAAGGTGCGAGTGTTGCGGTTCTTGGTGGCTCTACAGCCAAAAGTCCAATGCCACCTGGAGGAGGTGGAAAACAACGCTTGCGATGGACATCAGATCTTCATGACCGTTTCGTTGATGCCATCACACAACTTGGTGGACCAGATAGTGGGTATTTTCTTTATAGTAATGTTAAAATGCATTTGCTTTCATCTTAA

Coding sequence (CDS)

ATGTATCATGCTAAGAAATTTTCAACTGCGAGCTTAGTTCCACACAAATCTCAAGGTGCTGAACAAGGTGCGAGTGTTGCGGTTCTTGGTGGCTCTACAGCCAAAAGTCCAATGCCACCTGGAGGAGGTGGAAAACAACGCTTGCGATGGACATCAGATCTTCATGACCGTTTCGTTGATGCCATCACACAACTTGGTGGACCAGATAGTGGGTATTTTCTTTATAGTAATGTTAAAATGCATTTGCTTTCATCTTAA

Protein sequence

MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVDAITQLGGPDSGYFLYSNVKMHLLSS

Homology

[Close]

BLAST of ClCG10G016890 vs. Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 9.9e-07
Identity = 30/69 (43.48%), Postives = 36/69 (52.17%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          M+HAKK       P    G+ +  ++ V G S       P    K RLRWT +LH+RFVD
Sbjct: 1  MFHAKK-------PSSMNGSYENRAMCVQGDSGLVLTTDP----KPRLRWTVELHERFVD 58

Query: 61 AITQLGGPD 70
          A+ QLGGPD
Sbjct: 61 AVAQLGGPD 58

[Close]

BLAST of ClCG10G016890 vs. Swiss-Prot
Match: PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana GN=PHL3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-06
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 1


Query: 45 KQRLRWTSDLHDRFVDAITQLGGPD 70
          K RLRWTS+LH+RFVDA+TQLGGPD
Sbjct: 37 KPRLRWTSELHERFVDAVTQLGGPD 61

[Close]

BLAST of ClCG10G016890 vs. TrEMBL
Match: A0A0A0LF93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G814340 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.7e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD
Sbjct: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60

Query: 61 AITQLGGPD 70
          AITQLGGPD
Sbjct: 61 AITQLGGPD 69

[Close]

BLAST of ClCG10G016890 vs. TrEMBL
Match: A5B6P9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004304 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-27
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1


Query: 1   MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
           MYH KKFSTASLVPHK+QG+E  A+V  LGGS+ K+  P GG GKQRLRWTSDLHDRFVD
Sbjct: 159 MYHPKKFSTASLVPHKAQGSEPLATVGALGGSSVKNSNPTGGSGKQRLRWTSDLHDRFVD 218

Query: 61  AITQLGGPDSGYFLYSNVKMHLLS 85
           AITQLGGPDSGYFL SN  M +++
Sbjct: 219 AITQLGGPDSGYFLLSNEFMDVMT 242

[Close]

BLAST of ClCG10G016890 vs. TrEMBL
Match: M5VRH6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009512mg PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-23
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVL-GGSTAKSPMPPGGGGKQRLRWTSDLHDRFV 60
          MYHAKKFSTASLVPHK Q +E+ A+V V+ GGS+ KSP P GG GKQRLRWTSDLHDRFV
Sbjct: 1  MYHAKKFSTASLVPHKPQSSEELANVGVVSGGSSVKSPTPSGGSGKQRLRWTSDLHDRFV 60

Query: 61 DAITQLGGPD 70
          DAITQLGGPD
Sbjct: 61 DAITQLGGPD 70

[Close]

BLAST of ClCG10G016890 vs. TrEMBL
Match: D7TQ77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00100 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-23
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          MYH KKFSTASLVPHK+QG+E  A+V  LGGS+ K+  P GG GKQRLRWTSDLHDRFVD
Sbjct: 1  MYHPKKFSTASLVPHKAQGSEPLATVGALGGSSVKNSNPTGGSGKQRLRWTSDLHDRFVD 60

Query: 61 AITQLGGPD 70
          AITQLGGPD
Sbjct: 61 AITQLGGPD 69

[Close]

BLAST of ClCG10G016890 vs. TrEMBL
Match: V7CWS5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G101100g PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-23
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQG-AEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFV 60
          MYHAKKFS+AS+VP+KSQG AEQ A+V VLGGS AK+  P GG GKQRLRWTSDLHDRFV
Sbjct: 1  MYHAKKFSSASMVPYKSQGGAEQLANVEVLGGSAAKNATPAGGSGKQRLRWTSDLHDRFV 60

Query: 61 DAITQLGGPD 70
          DAITQLGGPD
Sbjct: 61 DAITQLGGPD 70

[Close]

BLAST of ClCG10G016890 vs. TAIR10
Match: AT1G79430.2 (AT1G79430.2 Homeodomain-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.6e-08
Identity = 30/69 (43.48%), Postives = 36/69 (52.17%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          M+HAKK       P    G+ +  ++ V G S       P    K RLRWT +LH+RFVD
Sbjct: 1  MFHAKK-------PSSMNGSYENRAMCVQGDSGLVLTTDP----KPRLRWTVELHERFVD 58

Query: 61 AITQLGGPD 70
          A+ QLGGPD
Sbjct: 61 AVAQLGGPD 58

[Close]

BLAST of ClCG10G016890 vs. TAIR10
Match: AT4G13640.2 (AT4G13640.2 Homeodomain-like superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 3.6e-07
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 1


Query: 45 KQRLRWTSDLHDRFVDAITQLGGPD 70
          K RLRWTS+LH+RFVDA+TQLGGPD
Sbjct: 37 KPRLRWTSELHERFVDAVTQLGGPD 61

[Close]

BLAST of ClCG10G016890 vs. TAIR10
Match: AT3G24120.2 (AT3G24120.2 Homeodomain-like superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 8.0e-07
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 1


Query: 45 KQRLRWTSDLHDRFVDAITQLGGPD 70
          K RLRWT++LH+RFVDA+TQLGGPD
Sbjct: 41 KPRLRWTTELHERFVDAVTQLGGPD 65

[Close]

BLAST of ClCG10G016890 vs. TAIR10
Match: AT2G01060.1 (AT2G01060.1 myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1


Query: 45 KQRLRWTSDLHDRFVDAITQLGGPD 70
          KQRLRWT +LH+RFVDA+ QLGGPD
Sbjct: 15 KQRLRWTHELHERFVDAVAQLGGPD 39

[Close]

BLAST of ClCG10G016890 vs. TAIR10
Match: AT5G45580.1 (AT5G45580.1 Homeodomain-like superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 8.9e-06
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 1


Query: 45 KQRLRWTSDLHDRFVDAITQLGGPD 70
          K RLRWT+DLHDRFVDA+ +LGG D
Sbjct: 7  KPRLRWTADLHDRFVDAVAKLGGAD 31

[Close]

BLAST of ClCG10G016890 vs. NCBI nr
Match: gi|449437646|ref|XP_004136602.1| (PREDICTED: protein PHR1-LIKE 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD
Sbjct: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60

Query: 61 AITQLGGPD 70
          AITQLGGPD
Sbjct: 61 AITQLGGPD 69

[Close]

BLAST of ClCG10G016890 vs. NCBI nr
Match: gi|659084947|ref|XP_008443159.1| (PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          MYHAKKFSTASLVPHKSQGAEQ ASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD
Sbjct: 1  MYHAKKFSTASLVPHKSQGAEQSASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60

Query: 61 AITQLGGPD 70
          AITQLGGPD
Sbjct: 61 AITQLGGPD 69

[Close]

BLAST of ClCG10G016890 vs. NCBI nr
Match: gi|147860272|emb|CAN80850.1| (hypothetical protein VITISV_004304 [Vitis vinifera])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1


Query: 1   MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
           MYH KKFSTASLVPHK+QG+E  A+V  LGGS+ K+  P GG GKQRLRWTSDLHDRFVD
Sbjct: 159 MYHPKKFSTASLVPHKAQGSEPLATVGALGGSSVKNSNPTGGSGKQRLRWTSDLHDRFVD 218

Query: 61  AITQLGGPDSGYFLYSNVKMHLLS 85
           AITQLGGPDSGYFL SN  M +++
Sbjct: 219 AITQLGGPDSGYFLLSNEFMDVMT 242

[Close]

BLAST of ClCG10G016890 vs. NCBI nr
Match: gi|645270757|ref|XP_008240600.1| (PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Prunus mume])

HSP 1 Score: 115.2 bits (287), Expect = 5.8e-23
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVL-GGSTAKSPMPPGGGGKQRLRWTSDLHDRFV 60
          MYHAKKFSTASLVPHK Q +E+ A+V V+ GGS+ KSP P GG GKQRLRWTSDLHDRFV
Sbjct: 1  MYHAKKFSTASLVPHKPQSSEELANVGVVSGGSSVKSPTPSGGSGKQRLRWTSDLHDRFV 60

Query: 61 DAITQLGGPD 70
          DAITQLGGPD
Sbjct: 61 DAITQLGGPD 70

[Close]

BLAST of ClCG10G016890 vs. NCBI nr
Match: gi|1009142158|ref|XP_015888573.1| (PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 115.2 bits (287), Expect = 5.8e-23
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1  MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVD 60
          MYHAKK STASLVPHK+Q AEQ A+  VL GS  K+  PPGG GKQRLRWTSDLHDRFVD
Sbjct: 1  MYHAKKISTASLVPHKAQSAEQIANAGVLTGSPVKNSTPPGGSGKQRLRWTSDLHDRFVD 60

Query: 61 AITQLGGPD 70
          AITQLGGPD
Sbjct: 61 AITQLGGPD 69

The following BLAST results are available for this feature:

BLAST of ClCG10G016890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APL_ARATH	9.9e-07	43.48	Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=1 SV=2	[more]
PHL3_ARATH	6.4e-06	84.00	Protein PHR1-LIKE 3 OS=Arabidopsis thaliana GN=PHL3 PE=1 SV=1	[more]

BLAST of ClCG10G016890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF93_CUCSA	4.7e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G814340 PE=4 SV=1	[more]
A5B6P9_VITVI	1.6e-27	73.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004304 PE=4 SV=1	[more]
M5VRH6_PRUPE	4.0e-23	80.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009512mg PE=4 SV=1	[more]
D7TQ77_VITVI	5.2e-23	78.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00100 PE=4 SV=...	[more]
V7CWS5_PHAVU	5.2e-23	81.43	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G101100g PE=4 SV=1	[more]

BLAST of ClCG10G016890 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79430.2	5.6e-08	43.48	Homeodomain-like superfamily protein	[more]
AT4G13640.2	3.6e-07	84.00	Homeodomain-like superfamily protein	[more]
AT3G24120.2	8.0e-07	80.00	Homeodomain-like superfamily protein	[more]
AT2G01060.1	1.0e-06	80.00	myb-like HTH transcriptional regulator family protein	[more]
AT5G45580.1	8.9e-06	76.00	Homeodomain-like superfamily protein	[more]

BLAST of ClCG10G016890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437646\|ref\|XP_004136602.1\|	6.8e-32	100.00	PREDICTED: protein PHR1-LIKE 1 isoform X1 [Cucumis sativus]	[more]
gi\|659084947\|ref\|XP_008443159.1\|	3.4e-31	98.55	PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cucumis melo]	[more]
gi\|147860272\|emb\|CAN80850.1\|	2.3e-27	73.81	hypothetical protein VITISV_004304 [Vitis vinifera]	[more]
gi\|645270757\|ref\|XP_008240600.1\|	5.8e-23	80.00	PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Prunus mume]	[more]
gi\|1009142158\|ref\|XP_015888573.1\|	5.8e-23	79.71	PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006447	Myb_dom_plants
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G016890.1	ClCG10G016890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 45..70 score: 4.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 45..70 score: 1.8
None	No IPR available	PANTHER	PTHR31314	FAMILY NOT NAMED	coord: 44..69 score: 1.3
None	No IPR available	PANTHER	PTHR31314:SF1	SUBFAMILY NOT NAMED	coord: 44..69 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G016890	Lsi03G016750	Bottle gourd (USVL1VR-Ls)	lsiwcgB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G016890	Cucumber (Gy14) v1	cgywcgB579
ClCG10G016890	Cucurbita maxima (Rimu)	cmawcgB222
ClCG10G016890	Cucurbita maxima (Rimu)	cmawcgB720
ClCG10G016890	Cucurbita moschata (Rifu)	cmowcgB207
ClCG10G016890	Cucurbita moschata (Rifu)	cmowcgB723
ClCG10G016890	Wild cucumber (PI 183967)	cpiwcgB195
ClCG10G016890	Cucumber (Chinese Long) v2	cuwcgB194
ClCG10G016890	Melon (DHL92) v3.5.1	mewcgB315
ClCG10G016890	Watermelon (97103) v1	wcgwmB051
ClCG10G016890	Cucurbita pepo (Zucchini)	cpewcgB546
ClCG10G016890	Cucurbita pepo (Zucchini)	cpewcgB767
ClCG10G016890	Bottle gourd (USVL1VR-Ls)	lsiwcgB121
ClCG10G016890	Cucumber (Gy14) v2	cgybwcgB179
ClCG10G016890	Melon (DHL92) v3.6.1	medwcgB309
ClCG10G016890	Silver-seed gourd	carwcgB0150
ClCG10G016890	Silver-seed gourd	carwcgB0240
ClCG10G016890	Cucumber (Chinese Long) v3	cucwcgB199
ClCG10G016890	Watermelon (97103) v2	wcgwmbB038
ClCG10G016890	Wax gourd	wcgwgoB097
ClCG10G016890	Wax gourd	wcgwgoB125