ClCG10G013820 (gene) Watermelon (Charleston Gray)

NameClCG10G013820
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein LENGTH=660
LocationCG_Chr10 : 28087843 .. 28088271 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGTAACATTTCTCTCATTGTTACTGCTTGTAGCCACGCCAGTTTAATTTAAGAAGGGATGAAGATATTCAACATGATGTTGCATGAATACAGAATAAAACCCAACACAGAGCATTATGTCATCAATGTCAATCTTCTTGGTCGAACAGGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA

mRNA sequence

ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA

Coding sequence (CDS)

ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA

Protein sequence

MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNLRDEGYFKILFTEH
BLAST of ClCG10G013820 vs. TrEMBL
Match: A0A0A0LFK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 379 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 420

BLAST of ClCG10G013820 vs. TrEMBL
Match: A0A0A0LFK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-03
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Sbjct: 558 GESVIEAGNEVHSFVANDRLHSESDQIYRLLRNL 591


HSP 2 Score: 30.4 bits (67), Expect = 1.4e+03
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIE 35
           M  K+++ WS ++A Y   G   E L LF++MI+
Sbjct: 177 MPTKDVISWSSLIACYSHNGLAAEALNLFNEMID 210


HSP 3 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 4   KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEA---------G 63
           K++VIWS ++AGYGI G+GRE L+LFD M++ S + PN  N T  S++ A         G
Sbjct: 470 KDVVIWSSMIAGYGIHGKGREALELFDYMVKISTIKPN--NVTFLSILSACSHAGLIKEG 529

Query: 64  TEVHSSVTDD-RLHPESDH 73
            E+ +++ ++ RL PES+H
Sbjct: 530 VELFNTMLNEYRLTPESNH 546

BLAST of ClCG10G013820 vs. TrEMBL
Match: A0A118K5K9_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012361 PE=4 SV=1)

HSP 1 Score: 38.5 bits (88), Expect = 5.2e+00
Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGYFK 88
           GQS IE  +EV+S   +DR+HP+++ IH L  +L    R++GY +
Sbjct: 646 GQSAIEVKSEVNSFKANDRIHPQAEAIHGLLWSLEMVMREDGYVR 690


HSP 2 Score: 58.2 bits (139), Expect = 6.4e-06
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1

Query: 4   KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEA---------G 63
           K++V+WS ++AGYGI G+GRE LKLF+ M+++S   PN  N T  S++ A         G
Sbjct: 475 KDVVLWSAMIAGYGIHGKGRESLKLFELMVKSSAARPN--NVTFLSILSACSHAGLVLEG 534

Query: 64  TEVHSSVTDD-RLHPESDH 73
            E+ S + +D  L P S+H
Sbjct: 535 IEIFSMMVNDYGLGPTSEH 551

BLAST of ClCG10G013820 vs. TrEMBL
Match: A0A061EEG8_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao GN=TCM_018394 PE=4 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 2.3e+00
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 1

Query: 48  QSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           QS++E   EVHS V DD+ HPE + I+ L G L
Sbjct: 652 QSMVEIRNEVHSFVADDKFHPECERIYELLGKL 684


HSP 2 Score: 57.8 bits (138), Expect = 8.3e-06
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1

Query: 4   KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTE 63
           K++VIWS ++AGYGI GQG+E L+LFD+M   S V PN           +   +IE G E
Sbjct: 466 KDVVIWSSMIAGYGIHGQGKEALRLFDQMTRNSSVKPNNVTFLSLLSACSRSGLIEEGIE 525

Query: 64  VHSSVTDD-RLHPESDH 73
           + + +     L P+S+H
Sbjct: 526 MFNKMVHKYHLKPDSEH 542

BLAST of ClCG10G013820 vs. TrEMBL
Match: A0A059AH32_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02252 PE=4 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 7.6e+01
Identity = 19/43 (44.19%), Postives = 24/43 (55.81%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNLR----DEGY 86
           GQSVIE   + H+ V DDR H +S  I  L  +L     +EGY
Sbjct: 642 GQSVIEVKNKTHTFVVDDRSHQDSSKIFELLRSLEVRMTEEGY 684


HSP 2 Score: 32.3 bits (72), Expect = 3.7e+02
Identity = 22/72 (30.56%), Postives = 32/72 (44.44%), Query Frame = 1

Query: 5   EIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEE-------------NSTGQSVI 64
           +++ WS ++A Y   G   E L LFD+MIE     PNE              N  G+  I
Sbjct: 274 DVISWSSVIACYVCKGATDEALNLFDEMIEKG-YEPNEVSVVGALQACAAGCNLEGEKKI 333

BLAST of ClCG10G013820 vs. TAIR10
Match: AT3G01580.1 (AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.3e-06
Identity = 26/78 (33.33%), Postives = 41/78 (52.56%), Query Frame = 1

Query: 3   VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGT 62
           +K+ V+W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G 
Sbjct: 429 LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGL 488

Query: 63  EVHS-SVTDDRLHPESDH 73
            +    V D RL P  +H
Sbjct: 489 RIFKLMVNDYRLAPNLEH 506


HSP 2 Score: 32.3 bits (72), Expect = 1.9e-01
Identity = 19/61 (31.15%), Postives = 26/61 (42.62%), Query Frame = 1

Query: 16  YGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEAGTEVHSSVTDDRLHPESDHIHR 75
           YG+ G+     KL       S      +    +S+IE   +VH  V DD LHPE + ++ 
Sbjct: 580 YGVKGEWENVEKL-----RNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYG 635

Query: 76  L 77
           L
Sbjct: 640 L 635

BLAST of ClCG10G013820 vs. NCBI nr
Match: gi|700204576|gb|KGN59709.1| (hypothetical protein Csa_3G840360 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 379 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 420

BLAST of ClCG10G013820 vs. NCBI nr
Match: gi|700204576|gb|KGN59709.1| (hypothetical protein Csa_3G840360 [Cucumis sativus])

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-03
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Sbjct: 558 GESVIEAGNEVHSFVANDRLHSESDQIYRLLRNL 591


HSP 2 Score: 30.4 bits (67), Expect = 2.0e+03
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIE 35
           M  K+++ WS ++A Y   G   E L LF++MI+
Sbjct: 177 MPTKDVISWSSLIACYSHNGLAAEALNLFNEMID 210


HSP 3 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 473 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 514

BLAST of ClCG10G013820 vs. NCBI nr
Match: gi|778685923|ref|XP_011652303.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus])

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-03
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL 81
           G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Sbjct: 652 GESVIEAGNEVHSFVANDRLHSESDQIYRLLRNL 685


HSP 2 Score: 30.4 bits (67), Expect = 2.0e+03
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIE 35
           M  K+++ WS ++A Y   G   E L LF++MI+
Sbjct: 271 MPTKDVISWSSLIACYSHNGLAAEALNLFNEMID 304


HSP 3 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE 43
           +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 473 LKVKDIVTWSAIIAGYGIQGQGREALKLFNKMIETSEVMPNE 514

BLAST of ClCG10G013820 vs. NCBI nr
Match: gi|659129955|ref|XP_008464928.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo])

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-03
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY 86
           G+SVIEAG EVHS V +DRLH E D I+RL  NL    RDE Y
Sbjct: 652 GESVIEAGNEVHSFVANDRLHSECDQIYRLLRNLNVNMRDESY 694


HSP 2 Score: 30.8 bits (68), Expect = 1.6e+03
Identity = 20/69 (28.99%), Postives = 33/69 (47.83%), Query Frame = 1

Query: 1   MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSVIEA 60
           M  K+++ WS ++A Y   G   E L LF++MI+  ++  N   + G          +E 
Sbjct: 271 MPTKDVISWSSLIACYSQNGLTAEALNLFNEMID-RKIKFNSVTAVGVLQACAVACNLEE 330

Query: 61  GTEVHSSVT 63
           G  +H  VT
Sbjct: 331 GKRIHELVT 338


HSP 3 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 4   KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEA---------G 63
           K++VIWS ++AGYGI G+GRE L+LFD M++ S + PN  N T  S++ A         G
Sbjct: 470 KDVVIWSSMIAGYGIHGKGREALELFDYMVKISTIKPN--NVTFLSILSACSHAGLIKEG 529

Query: 64  TEVHSSVTDD-RLHPESDH 73
            E+ +++ ++ RL PES+H
Sbjct: 530 VELFNTMLNEYRLTPESNH 546

BLAST of ClCG10G013820 vs. NCBI nr
Match: gi|976925348|gb|KVI09257.1| (Pentatricopeptide repeat-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 38.5 bits (88), Expect = 7.5e+00
Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = 1

Query: 47  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGYFK 88
           GQS IE  +EV+S   +DR+HP+++ IH L  +L    R++GY +
Sbjct: 646 GQSAIEVKSEVNSFKANDRIHPQAEAIHGLLWSLEMVMREDGYVR 690


HSP 2 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 29/77 (37.66%), Postives = 50/77 (64.94%), Query Frame = 1

Query: 4   KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTE 63
           K++VIWS ++AGYG+ GQG E LK+FD+M++ S+V PN+          +  S++E G E
Sbjct: 475 KDVVIWSAMIAGYGVHGQGEEALKVFDRMVKHSDVKPNDVTFLSILSACSHSSLVEEGIE 534

Query: 64  VHSSVTDD-RLHPESDH 73
           + +++  + +L P  +H
Sbjct: 535 IFNTMLPEYQLKPGPEH 551

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LFK2_CUCSA4.3e-1080.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1[more]
A0A0A0LFK2_CUCSA2.3e-0370.59Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1[more]
A0A118K5K9_CYNCS5.2e+0042.22Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ... [more]
A0A061EEG8_THECC2.3e+0051.52Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma c... [more]
A0A059AH32_EUCGR7.6e+0144.19Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02252 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G01580.13.3e-0633.33 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700204576|gb|KGN59709.1|6.1e-1080.95hypothetical protein Csa_3G840360 [Cucumis sativus][more]
gi|700204576|gb|KGN59709.1|3.3e-0370.59hypothetical protein Csa_3G840360 [Cucumis sativus][more]
gi|778685923|ref|XP_011652303.1|3.3e-0370.59PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum... [more]
gi|659129955|ref|XP_008464928.1|1.5e-0362.79PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum... [more]
gi|976925348|gb|KVI09257.1|7.5e+0042.22Pentatricopeptide repeat-containing protein [Cynara cardunculus var. scolymus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G013820.1ClCG10G013820.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G013820Bottle gourd (USVL1VR-Ls)lsiwcgB164
ClCG10G013820Bottle gourd (USVL1VR-Ls)lsiwcgB219
ClCG10G013820Cucumber (Gy14) v2cgybwcgB179
ClCG10G013820Cucumber (Gy14) v2cgybwcgB321
ClCG10G013820Melon (DHL92) v3.6.1medwcgB219
ClCG10G013820Melon (DHL92) v3.6.1medwcgB309
ClCG10G013820Silver-seed gourdcarwcgB0251
ClCG10G013820Silver-seed gourdcarwcgB0359
ClCG10G013820Silver-seed gourdcarwcgB0426
ClCG10G013820Silver-seed gourdcarwcgB0659
ClCG10G013820Cucumber (Chinese Long) v3cucwcgB006
ClCG10G013820Cucumber (Chinese Long) v3cucwcgB199
ClCG10G013820Cucumber (Chinese Long) v3cucwcgB370
ClCG10G013820Watermelon (97103) v2wcgwmbB038
ClCG10G013820Watermelon (97103) v2wcgwmbB057
ClCG10G013820Wax gourdwcgwgoB078
ClCG10G013820Wax gourdwcgwgoB111
ClCG10G013820Watermelon (Charleston Gray)wcgwcgB005
ClCG10G013820Watermelon (Charleston Gray)wcgwcgB057
ClCG10G013820Cucumber (Gy14) v1cgywcgB339
ClCG10G013820Cucumber (Gy14) v1cgywcgB579
ClCG10G013820Cucurbita maxima (Rimu)cmawcgB087
ClCG10G013820Cucurbita maxima (Rimu)cmawcgB221
ClCG10G013820Cucurbita maxima (Rimu)cmawcgB222
ClCG10G013820Cucurbita maxima (Rimu)cmawcgB248
ClCG10G013820Cucurbita maxima (Rimu)cmawcgB610
ClCG10G013820Cucurbita moschata (Rifu)cmowcgB078
ClCG10G013820Cucurbita moschata (Rifu)cmowcgB207
ClCG10G013820Cucurbita moschata (Rifu)cmowcgB237
ClCG10G013820Cucurbita moschata (Rifu)cmowcgB611
ClCG10G013820Wild cucumber (PI 183967)cpiwcgB195
ClCG10G013820Wild cucumber (PI 183967)cpiwcgB362
ClCG10G013820Cucumber (Chinese Long) v2cuwcgB005
ClCG10G013820Cucumber (Chinese Long) v2cuwcgB194
ClCG10G013820Cucumber (Chinese Long) v2cuwcgB344
ClCG10G013820Melon (DHL92) v3.5.1mewcgB006
ClCG10G013820Melon (DHL92) v3.5.1mewcgB315
ClCG10G013820Melon (DHL92) v3.5.1mewcgB230
ClCG10G013820Watermelon (97103) v1wcgwmB048
ClCG10G013820Watermelon (97103) v1wcgwmB051
ClCG10G013820Cucurbita pepo (Zucchini)cpewcgB346
ClCG10G013820Cucurbita pepo (Zucchini)cpewcgB546
ClCG10G013820Cucurbita pepo (Zucchini)cpewcgB583