ClCG10G013810 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G013810
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr10 : 28087604 .. 28087820 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAAGTCAATGGGAACCTTCAATACCATGATGTTGAACAACATAAATCCTGATGTTGCCATTGTGAAAATTCTTACCTCTTGTTCAGCTTTGGGCATTCTCCAACAAGCACTTTGCCTCCATGACTATTTTGTTAAAACTGGCTTCACTGTAATGTTTCTGTAGGAGCTTCGATCATAGAGCTGTGTTCGAAATGCGACAGCATAATTAA

mRNA sequence

ATGACATCCAAGTCAATGGGAACCTTCAATACCATGATGTTGAACAACATAAATCCTGATGTTGCCATTGTGAAAATTCTTACCTCTTGTTCAGCTTTGGGCATTCTCCAACAAGCACTTTGCCTCCATGACTATTTTGTTAAAACTGGCTTCACTGTAATGAGCTTCGATCATAGAGCTGTGTTCGAAATGCGACAGCATAATTAA

Coding sequence (CDS)

ATGACATCCAAGTCAATGGGAACCTTCAATACCATGATGTTGAACAACATAAATCCTGATGTTGCCATTGTGAAAATTCTTACCTCTTGTTCAGCTTTGGGCATTCTCCAACAAGCACTTTGCCTCCATGACTATTTTGTTAAAACTGGCTTCACTGTAATGAGCTTCGATCATAGAGCTGTGTTCGAAATGCGACAGCATAATTAA

Protein sequence

MTSKSMGTFNTMMLNNINPDVAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEMRQHN
Homology
[Close]
BLAST of ClCG10G013810 vs. Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMML-NNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDH 60
           M  +S+  F+ M+L NN  PD + +VK+L SCS LG L+QA C H Y +K GF    F  
Sbjct: 345 MAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIG 404

Query: 61  RAVFEM 65
            ++ E+
Sbjct: 405 ASLVEL 410

[Close]
BLAST of ClCG10G013810 vs. TrEMBL
Match: A0A0A0LFK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M+ KSMGTFNTM LNNI PD VA+VKIL SCS LGILQQALCLHDY +KTGFT   F   
Sbjct: 298 MSFKSMGTFNTMRLNNIKPDAVAMVKILVSCSDLGILQQALCLHDYVIKTGFTNNIFVGA 357

Query: 61  AVFEM 65
           ++ E+
Sbjct: 358 SLIEL 362

[Close]
BLAST of ClCG10G013810 vs. TrEMBL
Match: M5WYF2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015626mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M  KSMG F  M+ +   PD VA+VK+LT+CS LGILQQALCLH Y +K  F    F   
Sbjct: 375 MAYKSMGVFRNMLSDETQPDAVAMVKLLTACSGLGILQQALCLHAYVIKRAFKNNIFVGA 434

Query: 61  AVFEM 65
           ++ E+
Sbjct: 435 SLIEL 439

[Close]
BLAST of ClCG10G013810 vs. TrEMBL
Match: F6HUU4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00420 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M  KSMG F  M+ + I PD VA+VKIL + S LGI QQALCLH Y V++GF    F   
Sbjct: 388 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 447

Query: 61  AVFEM 65
           ++ E+
Sbjct: 448 SLIEL 452

[Close]
BLAST of ClCG10G013810 vs. TrEMBL
Match: A0A118K5K9_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012361 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPDVAI-VKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M  KS+  F  M+ N I PDV + VKILT+CS LG+LQQALCLH Y +K GF    F   
Sbjct: 386 MAFKSIELFVNMLSNEIQPDVILMVKILTACSNLGVLQQALCLHSYVIKCGFEYNPFVGA 445

Query: 61  AVFE 64
           ++ E
Sbjct: 446 SLIE 449

[Close]
BLAST of ClCG10G013810 vs. TrEMBL
Match: A0A059AH32_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02252 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-07
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFT 53
           M  KSM  F  M+ + I PD VAIVKIL +CS LGILQQA+CLH + +++GF+
Sbjct: 382 MAYKSMDVFRNMLASEIVPDAVAIVKILAACSELGILQQAICLHGHLIRSGFS 434

[Close]
BLAST of ClCG10G013810 vs. TAIR10
Match: AT3G01580.1 (AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.3e-07
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMML-NNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDH 60
           M  +S+  F+ M+L NN  PD + +VK+L SCS LG L+QA C H Y +K GF    F  
Sbjct: 345 MAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIG 404

Query: 61  RAVFEM 65
            ++ E+
Sbjct: 405 ASLVEL 410

[Close]
BLAST of ClCG10G013810 vs. NCBI nr
Match: gi|778685923|ref|XP_011652303.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M+ KSMGTFNTM LNNI PD VA+VKIL SCS LGILQQALCLHDY +KTGFT   F   
Sbjct: 392 MSFKSMGTFNTMRLNNIKPDAVAMVKILVSCSDLGILQQALCLHDYVIKTGFTNNIFVGA 451

Query: 61  AVFEM 65
           ++ E+
Sbjct: 452 SLIEL 456

[Close]
BLAST of ClCG10G013810 vs. NCBI nr
Match: gi|700204576|gb|KGN59709.1| (hypothetical protein Csa_3G840360 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M+ KSMGTFNTM LNNI PD VA+VKIL SCS LGILQQALCLHDY +KTGFT   F   
Sbjct: 298 MSFKSMGTFNTMRLNNIKPDAVAMVKILVSCSDLGILQQALCLHDYVIKTGFTNNIFVGA 357

Query: 61  AVFEM 65
           ++ E+
Sbjct: 358 SLIEL 362

[Close]
BLAST of ClCG10G013810 vs. NCBI nr
Match: gi|659129955|ref|XP_008464928.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M+ KSMGTFNTM LNNI PD VA+VKIL SCS LGILQQALCLHDY +KTGFT   F   
Sbjct: 392 MSFKSMGTFNTMRLNNIKPDAVAMVKILVSCSDLGILQQALCLHDYVIKTGFTNNIFVGA 451

Query: 61  AVFEM 65
           ++ E+
Sbjct: 452 SLIEL 456

[Close]
BLAST of ClCG10G013810 vs. NCBI nr
Match: gi|645248952|ref|XP_008230528.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Prunus mume])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M  KSMG F  M+ +   PD VA+VK+LT+CS LGILQQALCLH Y +K  F    F   
Sbjct: 391 MAYKSMGVFRNMLSDETQPDAVAMVKLLTACSGLGILQQALCLHAYVIKRAFKNSIFVGA 450

Query: 61  AVFEM 65
           ++ E+
Sbjct: 451 SLIEL 455

[Close]
BLAST of ClCG10G013810 vs. NCBI nr
Match: gi|595972200|ref|XP_007217623.1| (hypothetical protein PRUPE_ppa015626mg, partial [Prunus persica])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1   MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHR 60
           M  KSMG F  M+ +   PD VA+VK+LT+CS LGILQQALCLH Y +K  F    F   
Sbjct: 375 MAYKSMGVFRNMLSDETQPDAVAMVKLLTACSGLGILQQALCLHAYVIKRAFKNNIFVGA 434

Query: 61  AVFEM 65
           ++ E+
Sbjct: 435 SLIEL 439

The following BLAST results are available for this feature:
BLAST of ClCG10G013810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP205_ARATH2.3e-0642.42Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis th... [more]
BLAST of ClCG10G013810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFK2_CUCSA1.2e-1469.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G840360 PE=4 SV=1[more]
M5WYF2_PRUPE1.1e-0750.77Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015626mg PE=4 S... [more]
F6HUU4_VITVI1.9e-0750.77Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00420 PE=4 SV=... [more]
A0A118K5K9_CYNCS1.9e-0751.56Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ... [more]
A0A059AH32_EUCGR4.2e-0756.60Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02252 PE=4 SV=1[more]
BLAST of ClCG10G013810 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01580.11.3e-0742.42 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of ClCG10G013810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778685923|ref|XP_011652303.1|1.8e-1469.23PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum... [more]
gi|700204576|gb|KGN59709.1|1.8e-1469.23hypothetical protein Csa_3G840360 [Cucumis sativus][more]
gi|659129955|ref|XP_008464928.1|1.8e-1469.23PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum... [more]
gi|645248952|ref|XP_008230528.1|1.2e-0750.77PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Prunu... [more]
gi|595972200|ref|XP_007217623.1|1.6e-0750.77hypothetical protein PRUPE_ppa015626mg, partial [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G013810.1ClCG10G013810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG10G013810Cla97C10G196590Watermelon (97103) v2wcgwmbB038
ClCG10G013810Bhi11G001352Wax gourdwcgwgoB078
ClCG10G013810CmaCh14G006740Cucurbita maxima (Rimu)cmawcgB222
ClCG10G013810CmoCh14G006910Cucurbita moschata (Rifu)cmowcgB207
ClCG10G013810Lsi03G013480Bottle gourd (USVL1VR-Ls)lsiwcgB219
ClCG10G013810CsGy3G037820Cucumber (Gy14) v2cgybwcgB179
ClCG10G013810MELO3C030952.2Melon (DHL92) v3.6.1medwcgB309
ClCG10G013810Carg09705Silver-seed gourdcarwcgB0426
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G013810Watermelon (97103) v2wcgwmbB057
ClCG10G013810Wax gourdwcgwgoB111
ClCG10G013810Watermelon (Charleston Gray)wcgwcgB005
ClCG10G013810Watermelon (Charleston Gray)wcgwcgB057
ClCG10G013810Cucumber (Gy14) v1cgywcgB339
ClCG10G013810Cucumber (Gy14) v1cgywcgB579
ClCG10G013810Cucurbita maxima (Rimu)cmawcgB087
ClCG10G013810Cucurbita maxima (Rimu)cmawcgB221
ClCG10G013810Cucurbita maxima (Rimu)cmawcgB248
ClCG10G013810Cucurbita maxima (Rimu)cmawcgB610
ClCG10G013810Cucurbita moschata (Rifu)cmowcgB078
ClCG10G013810Cucurbita moschata (Rifu)cmowcgB237
ClCG10G013810Cucurbita moschata (Rifu)cmowcgB611
ClCG10G013810Wild cucumber (PI 183967)cpiwcgB195
ClCG10G013810Wild cucumber (PI 183967)cpiwcgB362
ClCG10G013810Cucumber (Chinese Long) v2cuwcgB005
ClCG10G013810Cucumber (Chinese Long) v2cuwcgB194
ClCG10G013810Cucumber (Chinese Long) v2cuwcgB344
ClCG10G013810Melon (DHL92) v3.5.1mewcgB006
ClCG10G013810Melon (DHL92) v3.5.1mewcgB315
ClCG10G013810Melon (DHL92) v3.5.1mewcgB230
ClCG10G013810Watermelon (97103) v1wcgwmB048
ClCG10G013810Watermelon (97103) v1wcgwmB051
ClCG10G013810Cucurbita pepo (Zucchini)cpewcgB346
ClCG10G013810Cucurbita pepo (Zucchini)cpewcgB546
ClCG10G013810Cucurbita pepo (Zucchini)cpewcgB583
ClCG10G013810Bottle gourd (USVL1VR-Ls)lsiwcgB164
ClCG10G013810Cucumber (Gy14) v2cgybwcgB321
ClCG10G013810Melon (DHL92) v3.6.1medwcgB219
ClCG10G013810Silver-seed gourdcarwcgB0251
ClCG10G013810Silver-seed gourdcarwcgB0359
ClCG10G013810Silver-seed gourdcarwcgB0659
ClCG10G013810Cucumber (Chinese Long) v3cucwcgB006
ClCG10G013810Cucumber (Chinese Long) v3cucwcgB199
ClCG10G013810Cucumber (Chinese Long) v3cucwcgB370