ClCG10G009400 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGGTATTTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTACAACCTCGAATCGTTGGTGAAAAACATTATGAAACTGTGCAAAGAGTTATACAAACCTTACAACGTTACAAAAAACTGCAAGACATTATAGCTATCCTTGGGTTGGACAAATTATCCGAAGAGGATCACTTAATCGTAGCACGAGCATGAAAAATTGAGCGTTTCTTATCCCAACCTTTTTTCGTAGCAGAAGTATTTACTAGTTCCCCTGGGAAATACGTTGGCCTAGTAAAAACAATTAGAGGGTTTAAATTAATCCTTTCTGGAGAATTAGATGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAACATCGATGAAGCTATTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAATTGATGAAATGACCTTAAATCTTAGTGTTCTGACTCCGAATCGAATTATTTAGGATTCAAAAGTGAAAGAAATCATTTTAGTTGCAAATAGTGGCCAAATTGGTGTATTACCAGATCATGCACCTATTGCCACAACTGTAGATATAGGTATTTTGAAAATACACCTTACTCCTAATGACGGATGGTTAAGAGGATAGGCTCATTACATTCAAAAAGATATATGGGAATTTCCCAGAAATAATTGCAATAATTGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGGGATCGTCGAAGTTTTGAAATGAATGGAAAGACAATCTACTTTCATTAAGTGATTTATTAGATAATCAAAACAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTIQNSEVLRGGFIEQLEKSLGPLTKSRNGSGSVSSEWIL
BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_HUPLU (ATP synthase subunit beta, chloroplastic OS=Huperzia lucidula GN=atpB PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09 Identity = 31/43 (72.09%), Postives = 32/43 (74.42%), Query Frame = 1
BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_CONMJ (ATP synthase subunit beta, chloroplastic OS=Convallaria majalis GN=atpB PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09 Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1
BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_LEMMI (ATP synthase subunit beta, chloroplastic OS=Lemna minor GN=atpB PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09 Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1
BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_DIOEL (ATP synthase subunit beta, chloroplastic OS=Dioscorea elephantipes GN=atpB PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09 Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1
BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_PHATC (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=atpB PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09 Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1
BLAST of ClCG10G009400 vs. TrEMBL
Match: Q4VMZ5_9ROSI (ATP synthase subunit beta (Fragment) OS=Phyllanthus lokohensis GN=atpB PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08 Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
BLAST of ClCG10G009400 vs. TrEMBL
Match: A0A0F6YSU4_9STRA (ATP synthase beta subunit (Fragment) OS=Biddulphia alternans GN=atpB PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. TrEMBL
Match: A0A0F6YSV0_9STRA (ATP synthase subunit beta (Fragment) OS=Synedra fulgens GN=atpB PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 9.5e-08 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. TrEMBL
Match: A0A0F6YSW1_9STRA (ATP synthase subunit beta (Fragment) OS=Rhizosolenia formosa GN=atpB PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 9.5e-08 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. TrEMBL
Match: K9SG60_9CYAN (ATP synthase subunit beta OS=Pseudanabaena sp. PCC 7367 GN=atpD PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07 Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. TAIR10
Match: ATCG00480.1 (ATCG00480.1 ATP synthase subunit beta) HSP 1 Score: 61.6 bits (148), Expect = 2.4e-10 Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = 1
BLAST of ClCG10G009400 vs. TAIR10
Match: AT5G08670.1 (AT5G08670.1 ATP synthase alpha/beta family protein) HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08 Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1
BLAST of ClCG10G009400 vs. TAIR10
Match: AT5G08680.1 (AT5G08680.1 ATP synthase alpha/beta family protein) HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08 Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1
BLAST of ClCG10G009400 vs. TAIR10
Match: AT5G08690.1 (AT5G08690.1 ATP synthase alpha/beta family protein) HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08 Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1
BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|817091420|gb|AKF18314.1| (ATP synthase beta subunit, partial (chloroplast) [Biddulphia alternans]) HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|61968291|gb|AAX57072.1| (ATP synthase beta subunit, partial (chloroplast) [Phyllanthus lokohensis]) HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07 Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|817091440|gb|AKF18324.1| (ATP synthase beta subunit, partial (chloroplast) [Synedra fulgens]) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|817091482|gb|AKF18345.1| (ATP synthase beta subunit, partial (chloroplast) [Rhizosolenia formosa]) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|504977055|ref|WP_015164157.1| (ATP synthase subunit beta [Pseudanabaena sp. PCC 7367]) HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07 Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |