ClCG10G009400 (gene) Watermelon (Charleston Gray)

NameClCG10G009400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionATP synthase beta-subunit
LocationCG_Chr10 : 21180963 .. 21181971 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGGTATTTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTACAACCTCGAATCGTTGGTGAAAAACATTATGAAACTGTGCAAAGAGTTATACAAACCTTACAACGTTACAAAAAACTGCAAGACATTATAGCTATCCTTGGGTTGGACAAATTATCCGAAGAGGATCACTTAATCGTAGCACGAGCATGAAAAATTGAGCGTTTCTTATCCCAACCTTTTTTCGTAGCAGAAGTATTTACTAGTTCCCCTGGGAAATACGTTGGCCTAGTAAAAACAATTAGAGGGTTTAAATTAATCCTTTCTGGAGAATTAGATGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAACATCGATGAAGCTATTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAATTGATGAAATGACCTTAAATCTTAGTGTTCTGACTCCGAATCGAATTATTTAGGATTCAAAAGTGAAAGAAATCATTTTAGTTGCAAATAGTGGCCAAATTGGTGTATTACCAGATCATGCACCTATTGCCACAACTGTAGATATAGGTATTTTGAAAATACACCTTACTCCTAATGACGGATGGTTAAGAGGATAGGCTCATTACATTCAAAAAGATATATGGGAATTTCCCAGAAATAATTGCAATAATTGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGGGATCGTCGAAGTTTTGAAATGAATGGAAAGACAATCTACTTTCATTAAGTGATTTATTAGATAATCAAAACAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC

mRNA sequence

ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC

Coding sequence (CDS)

ATTTATGTACCTGCGGACGATTTGACCGATCTTGCTCCTGCCACCACATTTGCACATTTGGATGCTATTACCGTACTATCAAGAGGATTAGCTCCAAAGAGGATCTTGAAAACAATTCAAAATTCAGAAGTACTCCGTGGGGGGTTCATTGAACAGCTGGAAAAAAGCCTGGGCCCGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTCGAGTGAATGGATACTC

Protein sequence

IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTIQNSEVLRGGFIEQLEKSLGPLTKSRNGSGSVSSEWIL
BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_HUPLU (ATP synthase subunit beta, chloroplastic OS=Huperzia lucidula GN=atpB PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 31/43 (72.09%), Postives = 32/43 (74.42%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTIQNSE 44
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +  S+
Sbjct: 325 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPSD 367

BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_CONMJ (ATP synthase subunit beta, chloroplastic OS=Convallaria majalis GN=atpB PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 380

BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_LEMMI (ATP synthase subunit beta, chloroplastic OS=Lemna minor GN=atpB PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 380

BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_DIOEL (ATP synthase subunit beta, chloroplastic OS=Dioscorea elephantipes GN=atpB PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFI 51
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G +
Sbjct: 325 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIV 378

BLAST of ClCG10G009400 vs. Swiss-Prot
Match: ATPB_PHATC (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=atpB PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQ 53
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + +
Sbjct: 311 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQVGIVTE 366

BLAST of ClCG10G009400 vs. TrEMBL
Match: Q4VMZ5_9ROSI (ATP synthase subunit beta (Fragment) OS=Phyllanthus lokohensis GN=atpB PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI 40
           +YVPADDLTDLAPATTFAHLDA TVLSRGLA K I   +
Sbjct: 315 VYVPADDLTDLAPATTFAHLDATTVLSRGLAAKGIYPAV 353

BLAST of ClCG10G009400 vs. TrEMBL
Match: A0A0F6YSU4_9STRA (ATP synthase beta subunit (Fragment) OS=Biddulphia alternans GN=atpB PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 41  VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 100

Query: 61  LGPLTK 63
           +    K
Sbjct: 101 IAETVK 106

BLAST of ClCG10G009400 vs. TrEMBL
Match: A0A0F6YSV0_9STRA (ATP synthase subunit beta (Fragment) OS=Synedra fulgens GN=atpB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-08
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + +    
Sbjct: 281 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGIVSEEHYE 340

Query: 61  LGPLTK 63
           +  + K
Sbjct: 341 IAEMVK 346

BLAST of ClCG10G009400 vs. TrEMBL
Match: A0A0F6YSW1_9STRA (ATP synthase subunit beta (Fragment) OS=Rhizosolenia formosa GN=atpB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-08
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 278 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 337

Query: 61  LGPLTK 63
           +    K
Sbjct: 338 IAESVK 343

BLAST of ClCG10G009400 vs. TrEMBL
Match: K9SG60_9CYAN (ATP synthase subunit beta OS=Pseudanabaena sp. PCC 7367 GN=atpD PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQ 53
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + Q
Sbjct: 310 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGVVSQ 365

BLAST of ClCG10G009400 vs. TAIR10
Match: ATCG00480.1 (ATCG00480.1 ATP synthase subunit beta)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-10
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI 40
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +
Sbjct: 327 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 365

BLAST of ClCG10G009400 vs. TAIR10
Match: AT5G08670.1 (AT5G08670.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLA 32
           IYVPADDLTD APATTFAHLDA TVLSR ++
Sbjct: 387 IYVPADDLTDPAPATTFAHLDATTVLSRQIS 417

BLAST of ClCG10G009400 vs. TAIR10
Match: AT5G08680.1 (AT5G08680.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLA 32
           IYVPADDLTD APATTFAHLDA TVLSR ++
Sbjct: 390 IYVPADDLTDPAPATTFAHLDATTVLSRQIS 420

BLAST of ClCG10G009400 vs. TAIR10
Match: AT5G08690.1 (AT5G08690.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-08
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLA 32
           IYVPADDLTD APATTFAHLDA TVLSR ++
Sbjct: 387 IYVPADDLTDPAPATTFAHLDATTVLSRQIS 417

BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|817091420|gb|AKF18314.1| (ATP synthase beta subunit, partial (chloroplast) [Biddulphia alternans])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 41  VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 100

Query: 61  LGPLTK 63
           +    K
Sbjct: 101 IAETVK 106

BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|61968291|gb|AAX57072.1| (ATP synthase beta subunit, partial (chloroplast) [Phyllanthus lokohensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI 40
           +YVPADDLTDLAPATTFAHLDA TVLSRGLA K I   +
Sbjct: 315 VYVPADDLTDLAPATTFAHLDATTVLSRGLAAKGIYPAV 353

BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|817091440|gb|AKF18324.1| (ATP synthase beta subunit, partial (chloroplast) [Synedra fulgens])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + +    
Sbjct: 281 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGIVSEEHYE 340

Query: 61  LGPLTK 63
           +  + K
Sbjct: 341 IAEMVK 346

BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|817091482|gb|AKF18345.1| (ATP synthase beta subunit, partial (chloroplast) [Rhizosolenia formosa])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQLEKS 60
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + ++   
Sbjct: 278 VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPGIVSEVHYE 337

Query: 61  LGPLTK 63
           +    K
Sbjct: 338 IAESVK 343

BLAST of ClCG10G009400 vs. NCBI nr
Match: gi|504977055|ref|WP_015164157.1| (ATP synthase subunit beta [Pseudanabaena sp. PCC 7367])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 1   IYVPADDLTDLAPATTFAHLDAITVLSRGLAPKRILKTI----QNSEVLRGGFIEQ 53
           +YVPADDLTD APATTFAHLDA TVLSRGLA K I   +      S +L+ G + Q
Sbjct: 310 VYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPGVVSQ 365

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATPB_HUPLU1.5e-0972.09ATP synthase subunit beta, chloroplastic OS=Huperzia lucidula GN=atpB PE=3 SV=1[more]
ATPB_CONMJ3.2e-0961.11ATP synthase subunit beta, chloroplastic OS=Convallaria majalis GN=atpB PE=3 SV=... [more]
ATPB_LEMMI3.2e-0961.11ATP synthase subunit beta, chloroplastic OS=Lemna minor GN=atpB PE=3 SV=1[more]
ATPB_DIOEL3.2e-0961.11ATP synthase subunit beta, chloroplastic OS=Dioscorea elephantipes GN=atpB PE=3 ... [more]
ATPB_PHATC3.2e-0958.93ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum (strain CC... [more]
Match NameE-valueIdentityDescription
Q4VMZ5_9ROSI7.3e-0879.49ATP synthase subunit beta (Fragment) OS=Phyllanthus lokohensis GN=atpB PE=3 SV=1[more]
A0A0F6YSU4_9STRA7.3e-0851.52ATP synthase beta subunit (Fragment) OS=Biddulphia alternans GN=atpB PE=4 SV=1[more]
A0A0F6YSV0_9STRA9.5e-0851.52ATP synthase subunit beta (Fragment) OS=Synedra fulgens GN=atpB PE=3 SV=1[more]
A0A0F6YSW1_9STRA9.5e-0851.52ATP synthase subunit beta (Fragment) OS=Rhizosolenia formosa GN=atpB PE=3 SV=1[more]
K9SG60_9CYAN1.2e-0760.71ATP synthase subunit beta OS=Pseudanabaena sp. PCC 7367 GN=atpD PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00480.12.4e-1076.92ATCG00480.1 ATP synthase subunit beta[more]
AT5G08670.13.8e-0883.87 ATP synthase alpha/beta family protein[more]
AT5G08680.13.8e-0883.87 ATP synthase alpha/beta family protein[more]
AT5G08690.13.8e-0883.87 ATP synthase alpha/beta family protein[more]
Match NameE-valueIdentityDescription
gi|817091420|gb|AKF18314.1|1.0e-0751.52ATP synthase beta subunit, partial (chloroplast) [Biddulphia alternans][more]
gi|61968291|gb|AAX57072.1|1.0e-0779.49ATP synthase beta subunit, partial (chloroplast) [Phyllanthus lokohensis][more]
gi|817091440|gb|AKF18324.1|1.4e-0751.52ATP synthase beta subunit, partial (chloroplast) [Synedra fulgens][more]
gi|817091482|gb|AKF18345.1|1.4e-0751.52ATP synthase beta subunit, partial (chloroplast) [Rhizosolenia formosa][more]
gi|504977055|ref|WP_015164157.1|1.8e-0760.71ATP synthase subunit beta [Pseudanabaena sp. PCC 7367][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G009400.1ClCG10G009400.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 1..36
score: 7.
NoneNo IPR availablePANTHERPTHR15184ATP SYNTHASEcoord: 1..35
score: 2.4
NoneNo IPR availablePANTHERPTHR15184:SF50SUBFAMILY NOT NAMEDcoord: 1..35
score: 2.4