ClCG10G008150 (gene) Watermelon (Charleston Gray)

NameClCG10G008150
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionMADS-box transcription factor
LocationCG_Chr10 : 15064777 .. 15065013 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGAAGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCTACCCAATCGGAGCTGGAATTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGA

mRNA sequence

ATGGGAAGAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGAAGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCTACCCAATCGGAGCTGGAATTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGA

Coding sequence (CDS)

ATGGGAAGAGGAAAATTGAGTCTGAATCTGATTCCAAATCGGAAATCTCGAATCTCAACCTTCAAGAAGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTCTCTACCCTTTGCGATGTTCGGACTTGCGTTCTCATCCATGGCCCTGCTTCTTCGTCGACTGAAGATCCTTCTACCCAATCGGAGCTGGAATTCACTCTTGGCCTTCCAATCGCACCGACCTCGAAGCTATGA

Protein sequence

MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQSELEFTLGLPIAPTSKL
BLAST of ClCG10G008150 vs. Swiss-Prot
Match: AGL92_ARATH (Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1

Query: 3  RGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQS 62
          R K  L LIP+R  R +TF+KR   + KK +EL+TLCD++ C +I+ P  + T  PST+ 
Sbjct: 2  RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFENPTVWPSTEG 61

Query: 63 ELE 66
            E
Sbjct: 62 VQE 64

BLAST of ClCG10G008150 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE 57
          M R K+ L  I N  SR +TFKKRK  LMKK +ELSTLC +  C +I+ P  ++ E
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE 56

BLAST of ClCG10G008150 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 6  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSS 55
          + L  I N K+RI+T+KKRK SL KKA E STLC V TC++++GP  ++
Sbjct: 6  VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKAT 54

BLAST of ClCG10G008150 vs. Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPST 60
          MGRG++ L  I N+ +R  TF KR+N L+KKAYELS LCD    ++I        E  ST
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61 QS 63
          QS
Sbjct: 61 QS 62

BLAST of ClCG10G008150 vs. Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPST 60
          MGRG++ L  I N+ +R  TF KR+N L+KKAYELS LCD    ++I        E  ST
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61 QS 63
          QS
Sbjct: 61 QS 62

BLAST of ClCG10G008150 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.3e-14
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDP 59
          MGRGKLS+ LI N KSR +TF KRK SL++KAYELSTLCDVR CV++HGP  S+ + P
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSP 58

BLAST of ClCG10G008150 vs. TrEMBL
Match: A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPST 60
          MGRG LSL LIPN KSR +TF KRK SL+KKAYELSTLCDV+TC+ I     +S  DPST
Sbjct: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI-----ASDCDPST 58

Query: 61 QSE 64
            E
Sbjct: 61 HFE 58

BLAST of ClCG10G008150 vs. TrEMBL
Match: A0A059AHB6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02348 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-10
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPA-SSSTEDP 59
          MGRGKL+L LIP  K+R  T++KRK  LMKKA E +TLC V TC++I+GPA S++T +P
Sbjct: 1  MGRGKLALELIPKEKARRITYEKRKKGLMKKAQEFTTLCGVDTCMVIYGPAGSTATTEP 59

BLAST of ClCG10G008150 vs. TrEMBL
Match: W9SAQ3_9ROSA (MADS-box protein OS=Morus notabilis GN=L484_010768 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTED 58
          MGRG L L LIP  ++R  TF KRK  L+KKAYELSTLCDV+ CV+I+   +  ++D
Sbjct: 1  MGRGTLPLRLIPKERARRITFAKRKKGLLKKAYELSTLCDVKVCVIIYDTTNQLSDD 57

BLAST of ClCG10G008150 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGP 51
          MGRG+L + LI N +SR +TF+KR   +MKKAYE STLC+V  C++I+GP
Sbjct: 1  MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGP 50

BLAST of ClCG10G008150 vs. TAIR10
Match: AT5G55690.1 (AT5G55690.1 MADS-box transcription factor family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE 57
          MGR  + +  I N K+RI+T+KKRK  L KKA E STLC V TCV+++GP+ +  E
Sbjct: 1  MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDE 56

BLAST of ClCG10G008150 vs. TAIR10
Match: AT5G26580.1 (AT5G26580.1 AGAMOUS-like-34)

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-10
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGP 51
          MG  K+ L+LI N  SR ++F KRKN +MKK YELSTLC V+ C LI+ P
Sbjct: 1  MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSP 50

BLAST of ClCG10G008150 vs. TAIR10
Match: AT1G31640.1 (AT1G31640.1 AGAMOUS-like 92)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1

Query: 3  RGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPSTQS 62
          R K  L LIP+R  R +TF+KR   + KK +EL+TLCD++ C +I+ P  + T  PST+ 
Sbjct: 2  RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFENPTVWPSTEG 61

Query: 63 ELE 66
            E
Sbjct: 62 VQE 64

BLAST of ClCG10G008150 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 6  LSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSS 55
          + L  I N K+RI+T+KKRK SL KKA E STLC V TC++++GP  ++
Sbjct: 6  VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKAT 54

BLAST of ClCG10G008150 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTE 57
          M R K+ L  I N  SR +TFKKRK  LMKK +ELSTLC +  C +I+ P  ++ E
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE 56

BLAST of ClCG10G008150 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-14
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDP 59
          MGRGKLS+ LI N KSR +TF KRK SL++KAYELSTLCDVR CV++HGP  S+ + P
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSP 58

BLAST of ClCG10G008150 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDP 59
          MGRGKLS+ LI N KSR +TF KRK SL++KAYELSTLCDVR CV +HGP  S+ + P
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSP 58

BLAST of ClCG10G008150 vs. NCBI nr
Match: gi|449455824|ref|XP_004145650.1| (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPASSSTEDPST 60
          MGRG LSL LIPN KSR +TF KRK SL+KKAYELSTLCDV+TC+ I     +S  DPST
Sbjct: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI-----ASDCDPST 58

Query: 61 QSE 64
            E
Sbjct: 61 HFE 58

BLAST of ClCG10G008150 vs. NCBI nr
Match: gi|629086694|gb|KCW53051.1| (hypothetical protein EUGRSUZ_J02348 [Eucalyptus grandis])

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-10
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPA-SSSTEDP 59
          MGRGKL+L LIP  K+R  T++KRK  LMKKA E +TLC V TC++I+GPA S++T +P
Sbjct: 1  MGRGKLALELIPKEKARRITYEKRKKGLMKKAQEFTTLCGVDTCMVIYGPAGSTATTEP 59

BLAST of ClCG10G008150 vs. NCBI nr
Match: gi|702486937|ref|XP_010034675.1| (PREDICTED: MADS-box transcription factor 56-like [Eucalyptus grandis])

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-10
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1

Query: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPA-SSSTEDP 59
          MGRGKL+L LIP  K+R  T++KRK  LMKKA E +TLC V TC++I+GPA S++T +P
Sbjct: 1  MGRGKLALELIPKEKARRITYEKRKKGLMKKAQEFTTLCGVDTCMVIYGPAGSTATTEP 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGL92_ARATH3.7e-0844.44Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1[more]
AGL80_ARATH4.8e-0850.00Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1[more]
AGL82_ARATH4.8e-0853.06Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1[more]
MADS7_ORYSI4.8e-0848.39MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2[more]
MADS7_ORYSJ4.8e-0848.39MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A0A0LME6_CUCSA5.3e-1467.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1[more]
A0A0A0LAL9_CUCSA1.9e-1166.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1[more]
A0A059AHB6_EUCGR4.7e-1059.32Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02348 PE=4 SV=1[more]
W9SAQ3_9ROSA2.3e-0956.14MADS-box protein OS=Morus notabilis GN=L484_010768 PE=4 SV=1[more]
M5X3X5_PRUPE4.0e-0958.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G55690.11.4e-1051.79 MADS-box transcription factor family protein[more]
AT5G26580.13.2e-1058.00 AGAMOUS-like-34[more]
AT1G31640.12.1e-0944.44 AGAMOUS-like 92[more]
AT5G58890.12.7e-0953.06 AGAMOUS-like 82[more]
AT5G48670.12.7e-0950.00 AGAMOUS-like 80[more]
Match NameE-valueIdentityDescription
gi|778674258|ref|XP_011650173.1|7.7e-1467.24PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus][more]
gi|659121915|ref|XP_008460878.1|1.0e-1367.24PREDICTED: MADS-box protein SOC1-like [Cucumis melo][more]
gi|449455824|ref|XP_004145650.1|2.7e-1166.67PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus][more]
gi|629086694|gb|KCW53051.1|6.7e-1059.32hypothetical protein EUGRSUZ_J02348 [Eucalyptus grandis][more]
gi|702486937|ref|XP_010034675.1|6.7e-1059.32PREDICTED: MADS-box transcription factor 56-like [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009791 post-embryonic development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048608 reproductive structure development
biological_process GO:0044702 single organism reproductive process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G008150.1ClCG10G008150.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 1.2E-12coord: 3..23
score: 1.2E-12coord: 38..59
score: 1.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..51
score: 5.4
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 4.9
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..47
score: 18
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 1..59
score: 2.62
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..50
score: 1.2
NoneNo IPR availablePANTHERPTHR11945:SF153AGAMOUS-LIKE MADS-BOX PROTEIN AGL36-RELATEDcoord: 2..50
score: 1.2

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG10G008150Cla005712Watermelon (97103) v1wcgwmB055
ClCG10G008150Cla97C10G191660Watermelon (97103) v2wcgwmbB038
The following gene(s) are paralogous to this gene:

None