ClCG10G007980 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G007980
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr10 : 12983803 .. 12986252 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTGACAACTGAGTATGACAAGAATGTTGAAACCATTTTGGCCCACAGAAGGGTAAGTAGCAAGGGTGTCCCAAGTCACTTCGAATATCTTGTGAAATGGACAAGACTCCCAGACTCGGAGGCAAGCTGGGAAAAGGAAGGACACCTATGGCAATTCGCCGACAAGGTCTCAAACTATTGGCAGGAGGTCCGCGACGAGGGCGTCGCTAGCATCAGTGGGGGAGGGTGTCACGGGAAAATTTTGACCCACAAATTTTGTGACACGACAGTGCCCATCCCCTTAGCATGGCCAAGCAAGGATGGGGAAACCGCTTGCCGCAGCCCCTCGGGAGGCCCATGCGTCTGCCGCACCCCACCGGCACGCATGGCCTAAGGCGCACAATAATGGGCTGCGCGCATAAGGGAGGAAAGGCGAGAGGTAGACGCGTCGACCCCAGGCGTTGGCATGGGCGACGCATCGCCAGGCAAGGCTGCCAGGCGCAAAGGAGCTTGACGCTAGGCTGCGCGACACCAGGATGCTCGACGCAGGGCTGCTCGACGCACAGTGCCGCAAGCCATACCCGGGAGACGCATAGACCCGGACACGTCTGGGGAAGACGGGATAGGCGGCGAAGGATCTAGAAAGTTCTAGAGCACGCATAGGCCGGGAAGAGCCTCGATGGCTCTAGAAGGATCCCGATCACCCGGGAAAAGTCAGGGCGCGCCTAGAGAGACCCGGACACGGCTGGAAGCCTCCAGAGTCGGCTGACACGCGCGGCCATGGCCTAGACAGACCCCGATGGCGCTGGAATGGCCTAGATGGTTCTCGAATGTTCCTCCCAATACCTTTGCCGGTTGTACATAATATTTTAATATTAAAACATCTAGAAAGTTCCATGACCGACATTGTAAGTCGGTCATAGAAAGTCGGTGTTGGGGCCCTCTATAAATAGAACGGGCCCCCTCATTTGTAAGGTATCCTCGGAAAACTTTGAAAGCTCAATACACTTTAGACATTCTCCAACCAACGCTCTTGACTTTCCTTGCTCTTTCTAACGCCTCTTTGCGATCTTTCTAGTCCCGACAAACCTCAATAGGCTTACTTGGCTGCCCCTATTGCACCAAGTGCCGCACGAAGGTCATAAGAAAACTGTGACCCCGTGACAGTTTTTACCCGAGATCGAAGTTACACTTCCATTTATCATGAAGTTAAGCTCCTCAGCGTATAACCTTAACAACCAATGGTAGCCACCTTCAACGCATAAGCTCCTCGACACATAGCTAGTAGCCACCCTCAACGCGTAAACTCCTCAACGCATAGCTGATAGCCTTCTTCAACGCATAAACTTCTTTGACACATAGTAAGACTTCTTACCAACACTAAAGTCCTTACTAGCACATAATAATCCTTCAACGCATAACATCTTATAGCAACTTTTAACGCTTAACGACCTCTTTTGCACATGCTATACTATACTTAAGGACTTCCTGATCAGCACAATGATTTTTTATAGCAAACCTTCAGCGCATAGTTGCTGCCCATCGCATGGCTTATCAATACATCGCTAACCTTCAACCTATCGCATACAACTACTCTCCAATTCAAGGTATCCTTATCAACATATGGTAGGTTATGTAATACCCTATCTCCAAAAACCTAGGTATTCAAAATGGCTAGTAAGGATAAAAGGATAAAAGATGTGGATTAACGGAACTTTTAAAATGGAAAAGTTAAGTTTGTGGGATTATTGAATAATGGCCAAGAAATTATGTGCGTTCAAATGAATGATATTAGGAAAAGGGTGAGAATGAAGGACTAAAGGTATAGTTGGAAATTGGTTGAAGTTAGATGTATTTTGGAAATCAGGTTGACGCATAGATGGATAAGTTCTAACGCATGGTATTGAATACTGAGGATTTGAAAAGGGACACAGTACTGAGGGACATGAGAAGGTACTTGGGCACCCGCCATATTCCTATGTGCACATAGAGGTTACATGCTGGTGTGTTGAGTTTTGCTCCGCATCGAGCCTTATTTATTTTCGATGTTGAGAGCGTTGAGTCTTGCTCCGCCTCAACTAAGGGAAAAAGATTGAGAAACCGAATTGATTTTTCGTATTAATAAACTAAAACGATTATATACGTTTTGGAATGGATTTATATGATTTGGGAGAGTTGTTGGAAAATATGTTTCTGATGTATTGTTGCATTAAATCCTTGTTTTATGCGTATAGATTTAACATGTCTGTTTTCGAACAAAAGATAGTTTTACAAAACCAATCACTCACAGGGCTTTAGGTCACGTTTTCTATTTTTCTAACTTTCCAGGTAGCGAGCAAGTTCGGGATGCTTTGCCTACGCAAGAACCTCGTCTGGGCCTTCTTTGGTGAAAATGGTTGGACAGTGAACCTTACAGAGGAGTCAAGGTTGATGTCTTCACATCTCCTCTCGGGTTATGGAGGATAA

mRNA sequence

ATGGGTGTGACAACTGAGTATGACAAGAATGTTGAAACCATTTTGGCCCACAGAAGGGTAAGTAGCAAGGGTGTCCCAAGTCACTTCGAATATCTTGTGAAATGGACAAGACTCCCAGACTCGGAGGCAAGCTGGGAAAAGGAAGGACACCTATGGCAATTCGCCGACAAGGTCTCAAACTATTGGCAGGAGGTCCGCGACGAGGGCGTCGCTAGCATCAGTGGGGGAGGTGCCCATCCCCTTAGCATGGCCAAGCAAGGATGGGGAAACCGCTTGCCGCAGCCCCTCGGGAGGCCCATGCGTCTGCCGCACCCCACCGGCACGCATGGCCTAAGGCGCACAATAATGGGCTGCGCGCATAAGGGAGGAAAGGCGAGAGGTAGACGCGTCGACCCCAGGCGTTGGCATGGGCGACGCATCGCCAGGCAAGGCTGCCAGGCGCAAAGGAGCTTGACGCTAGGCTGCGCGACACCAGGATGCTCGACGCAGGGCTGCTCGACGCACAGTGCCGCAAGCCATACCCGGGAGACGCATAGACCCGGACACAAGGATCCCGATCACCCGGGAAAAGTCAGGGCGCGCCTAGAGAGACCCGGACACGGCTGGAAGCCTCCAGAGTCGGCTGACACGCGCGGCCATGGCCTAGACAGACCCCGATGGCGCTGGAATGGCCTAGATGGTTCTCGAATGTTCCTCCCAATACCTTTGCCGGTTTTTTTACCCGAGATCGAAGTTACACTTCCATTTATCATGAAGTTAAGCTCCTCAGCGTATAACCTTAACAACCAATGGACTAAAGGTATAGTTGGAAATTGGTTGAAGTTAGATGTATTTTGGAAATCAGGATTTGAAAAGGGACACAGTACTGAGGGACATGAGAAGGTACTTGGGCACCCGCCATATTCCTATGTGCACATAGAGGTAGCGAGCAAGTTCGGGATGCTTTGCCTACGCAAGAACCTCGTCTGGGCCTTCTTTGGTGAAAATGGTTGGACAGTGAACCTTACAGAGGAGTCAAGGTTGATGTCTTCACATCTCCTCTCGGGTTATGGAGGATAA

Coding sequence (CDS)

ATGGGTGTGACAACTGAGTATGACAAGAATGTTGAAACCATTTTGGCCCACAGAAGGGTAAGTAGCAAGGGTGTCCCAAGTCACTTCGAATATCTTGTGAAATGGACAAGACTCCCAGACTCGGAGGCAAGCTGGGAAAAGGAAGGACACCTATGGCAATTCGCCGACAAGGTCTCAAACTATTGGCAGGAGGTCCGCGACGAGGGCGTCGCTAGCATCAGTGGGGGAGGTGCCCATCCCCTTAGCATGGCCAAGCAAGGATGGGGAAACCGCTTGCCGCAGCCCCTCGGGAGGCCCATGCGTCTGCCGCACCCCACCGGCACGCATGGCCTAAGGCGCACAATAATGGGCTGCGCGCATAAGGGAGGAAAGGCGAGAGGTAGACGCGTCGACCCCAGGCGTTGGCATGGGCGACGCATCGCCAGGCAAGGCTGCCAGGCGCAAAGGAGCTTGACGCTAGGCTGCGCGACACCAGGATGCTCGACGCAGGGCTGCTCGACGCACAGTGCCGCAAGCCATACCCGGGAGACGCATAGACCCGGACACAAGGATCCCGATCACCCGGGAAAAGTCAGGGCGCGCCTAGAGAGACCCGGACACGGCTGGAAGCCTCCAGAGTCGGCTGACACGCGCGGCCATGGCCTAGACAGACCCCGATGGCGCTGGAATGGCCTAGATGGTTCTCGAATGTTCCTCCCAATACCTTTGCCGGTTTTTTTACCCGAGATCGAAGTTACACTTCCATTTATCATGAAGTTAAGCTCCTCAGCGTATAACCTTAACAACCAATGGACTAAAGGTATAGTTGGAAATTGGTTGAAGTTAGATGTATTTTGGAAATCAGGATTTGAAAAGGGACACAGTACTGAGGGACATGAGAAGGTACTTGGGCACCCGCCATATTCCTATGTGCACATAGAGGTAGCGAGCAAGTTCGGGATGCTTTGCCTACGCAAGAACCTCGTCTGGGCCTTCTTTGGTGAAAATGGTTGGACAGTGAACCTTACAGAGGAGTCAAGGTTGATGTCTTCACATCTCCTCTCGGGTTATGGAGGATAA

Protein sequence

MGVTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYWQEVRDEGVASISGGGAHPLSMAKQGWGNRLPQPLGRPMRLPHPTGTHGLRRTIMGCAHKGGKARGRRVDPRRWHGRRIARQGCQAQRSLTLGCATPGCSTQGCSTHSAASHTRETHRPGHKDPDHPGKVRARLERPGHGWKPPESADTRGHGLDRPRWRWNGLDGSRMFLPIPLPVFLPEIEVTLPFIMKLSSSAYNLNNQWTKGIVGNWLKLDVFWKSGFEKGHSTEGHEKVLGHPPYSYVHIEVASKFGMLCLRKNLVWAFFGENGWTVNLTEESRLMSSHLLSGYGG
Homology
[Close]
BLAST of ClCG10G007980 vs. TrEMBL
Match: A5AHG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019029 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3   VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
           V T YDK VE ILA R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 722 VVTSYDKEVELILADRVIRRRGVPPATEYLVKWKGLPESEASWEPAEALWQFQEQIERFR 781

Query: 63  QE 65
            E
Sbjct: 782 AE 783

[Close]
BLAST of ClCG10G007980 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3    VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
            V T YDK VE I+A R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 1476 VVTSYDKEVEHIIADRIIRRRGVPPATEYLVKWKGLPESEASWEPANALWQFQEQIERFR 1535

Query: 63   QE 65
             E
Sbjct: 1536 AE 1537

[Close]
BLAST of ClCG10G007980 vs. TrEMBL
Match: A5AEL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037851 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3   VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
           V T YDK VE I+A R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 619 VVTSYDKEVEHIIADRIIRRRGVPPTTEYLVKWKGLPESEASWEPANALWQFQEQIERFR 678

Query: 63  QE 65
            E
Sbjct: 679 AE 680

[Close]
BLAST of ClCG10G007980 vs. TrEMBL
Match: A5B4X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-09
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3    VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
            + T YDK VE I+A R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 1385 IVTSYDKEVEHIIADRIIRRRGVPPATEYLVKWKGLPESEASWEPANALWQFQEQIERFR 1444

Query: 63   QE 65
             E
Sbjct: 1445 AE 1446

[Close]
BLAST of ClCG10G007980 vs. TrEMBL
Match: W1P9M9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00144p00067060 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-09
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 1   MGVTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSN 60
           +   T +DK VE +LA R  SS+GV  H E LVKW  LP+SEA WE++  LWQF  +++ 
Sbjct: 59  LNTVTSFDKEVEYVLADRTSSSRGVAKHKEDLVKWKGLPESEAIWERDATLWQFEKQINE 118

Query: 61  YWQEVRDEGVASISGGGAHPLSMAK 86
           Y  E +    ++ SG G   LS AK
Sbjct: 119 YLCE-KSTRASTPSGWGG--LSQAK 140

[Close]
BLAST of ClCG10G007980 vs. NCBI nr
Match: gi|659121350|ref|XP_008460615.1| (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1 

Query: 2    GVTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKV 59
            GV  E+D+ ++ ILA R++  +GVPSH EYL+ W  LP+SEASWE+E  LWQF  ++
Sbjct: 1363 GVIIEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWEREDMLWQFQAEI 1419

[Close]
BLAST of ClCG10G007980 vs. NCBI nr
Match: gi|1009138625|ref|XP_015886686.1| (PREDICTED: probable RNA helicase SDE3 [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-09
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 

Query: 3   VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
           V T +DK++E ILA+  +  +GVP + E+L+KW  LPDSEASWE E  LWQF D +  + 
Sbjct: 73  VVTSFDKDIEAILANWVIRHRGVPIYTEHLMKWKNLPDSEASWEHEEALWQFKDHIRRFK 132

Query: 63  QE 65
           +E
Sbjct: 133 EE 134

[Close]
BLAST of ClCG10G007980 vs. NCBI nr
Match: gi|147844570|emb|CAN80068.1| (hypothetical protein VITISV_019029 [Vitis vinifera])

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3   VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
           V T YDK VE ILA R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 722 VVTSYDKEVELILADRVIRRRGVPPATEYLVKWKGLPESEASWEPAEALWQFQEQIERFR 781

Query: 63  QE 65
            E
Sbjct: 782 AE 783

[Close]
BLAST of ClCG10G007980 vs. NCBI nr
Match: gi|147804663|emb|CAN62382.1| (hypothetical protein VITISV_037851 [Vitis vinifera])

HSP 1 Score: 70.1 bits (170), Expect = 8.8e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3   VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
           V T YDK VE I+A R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 619 VVTSYDKEVEHIIADRIIRRRGVPPTTEYLVKWKGLPESEASWEPANALWQFQEQIERFR 678

Query: 63  QE 65
            E
Sbjct: 679 AE 680

[Close]
BLAST of ClCG10G007980 vs. NCBI nr
Match: gi|147826806|emb|CAN63950.1| (hypothetical protein VITISV_032357 [Vitis vinifera])

HSP 1 Score: 70.1 bits (170), Expect = 8.8e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 3    VTTEYDKNVETILAHRRVSSKGVPSHFEYLVKWTRLPDSEASWEKEGHLWQFADKVSNYW 62
            V T YDK VE I+A R +  +GVP   EYLVKW  LP+SEASWE    LWQF +++  + 
Sbjct: 1476 VVTSYDKEVEHIIADRIIRRRGVPPATEYLVKWKGLPESEASWEPANALWQFQEQIERFR 1535

Query: 63   QE 65
             E
Sbjct: 1536 AE 1537

The following BLAST results are available for this feature:
BLAST of ClCG10G007980 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AHG7_VITVI4.7e-0953.23Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019029 PE=4 SV=1[more]
A5BX03_VITVI6.1e-0951.61Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1[more]
A5AEL8_VITVI6.1e-0951.61Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037851 PE=4 SV=1[more]
A5B4X8_VITVI8.0e-0950.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1[more]
W1P9M9_AMBTC8.0e-0944.71Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00144p00067060 PE=4 SV=... [more]
BLAST of ClCG10G007980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121350|ref|XP_008460615.1|1.0e-0952.63PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo][more]
gi|1009138625|ref|XP_015886686.1|4.0e-0950.00PREDICTED: probable RNA helicase SDE3 [Ziziphus jujuba][more]
gi|147844570|emb|CAN80068.1|6.7e-0953.23hypothetical protein VITISV_019029 [Vitis vinifera][more]
gi|147804663|emb|CAN62382.1|8.8e-0951.61hypothetical protein VITISV_037851 [Vitis vinifera][more]
gi|147826806|emb|CAN63950.1|8.8e-0951.61hypothetical protein VITISV_032357 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G007980.1ClCG10G007980.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 8..66
score: 2.6
IPR000953Chromo/chromo shadow domainPROFILEPS50013CHROMO_2coord: 9..64
score: 11
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 9..64
score: 7.66
IPR023780Chromo domainPFAMPF00385Chromocoord: 10..63
score: 1.2
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 10..66
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G007980Cucumber (Gy14) v1cgywcgB444
ClCG10G007980Cucurbita maxima (Rimu)cmawcgB283
ClCG10G007980Cucurbita maxima (Rimu)cmawcgB614
ClCG10G007980Cucurbita moschata (Rifu)cmowcgB278
ClCG10G007980Wild cucumber (PI 183967)cpiwcgB190
ClCG10G007980Cucumber (Chinese Long) v2cuwcgB189
ClCG10G007980Melon (DHL92) v3.5.1mewcgB416
ClCG10G007980Cucurbita pepo (Zucchini)cpewcgB195
ClCG10G007980Cucurbita pepo (Zucchini)cpewcgB349
ClCG10G007980Bottle gourd (USVL1VR-Ls)lsiwcgB318
ClCG10G007980Cucumber (Gy14) v2cgybwcgB174
ClCG10G007980Melon (DHL92) v3.6.1medwcgB405
ClCG10G007980Silver-seed gourdcarwcgB0914
ClCG10G007980Silver-seed gourdcarwcgB0991
ClCG10G007980Cucumber (Chinese Long) v3cucwcgB194
ClCG10G007980Watermelon (97103) v2wcgwmbB038
ClCG10G007980Wax gourdwcgwgoB098