ClCG10G007770 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G007770
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCG_Chr10 : 12060726 .. 12061157 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAATAGTATCCTTCACAACTGCATATTATATGTGGCATTCACTTCGCCAATCATATGAGTCATCATCATACATACAAGTTCTCAGTCTTAAAGTCCAGCTACAGAAAATTTGGAAGGACAGTCTTACTATCACACAATATTTGGTCAAATTTAAAGATATTTCTGATAAGTTGTCTGCGATCAGTGAACCCATATCTCATAAAAACCACATCTCCTATATTTTAGAGGGTCTTGGAGTTGAGTACAATGCTTTTGTCACCTCCATCCAAAACAGGGGGGATATTCCAACGCTTGAGGATGTTCGCACACTTCTTCTCAGTTATGATTATCGTCTTGAACGACAAAACTCAGTGGATCAGTTGAATAATATACAAGCAAATTTGGCCAATCTTCGATTTAATCAGAATTCAAACAATCGGCGATAG

mRNA sequence

ATGGGAGAAATAGTATCCTTCACAACTGCATATTATATGTGGCATTCACTTCGCCAATCATATGAGTCATCATCATACATACAAGTTCTCAGTCTTAAAGTCCAGCTACAGAAAATTTGGAAGGACAGTCTTACTATCACACAATATTTGGTCAAATTTAAAGATATTTCTGATAAGTTGTCTGCGATCAGTGAACCCATATCTCATAAAAACCACATCTCCTATATTTTAGAGGGTCTTGGAGTTGAGTACAATGCTTTTGTCACCTCCATCCAAAACAGGGGGGATATTCCAACGCTTGAGGATGTTCGCACACTTCTTCTCAGTTATGATTATCGTCTTGAACGACAAAACTCAGTGGATCAGTTGAATAATATACAAGCAAATTTGGCCAATCTTCGATTTAATCAGAATTCAAACAATCGGCGATAG

Coding sequence (CDS)

ATGGGAGAAATAGTATCCTTCACAACTGCATATTATATGTGGCATTCACTTCGCCAATCATATGAGTCATCATCATACATACAAGTTCTCAGTCTTAAAGTCCAGCTACAGAAAATTTGGAAGGACAGTCTTACTATCACACAATATTTGGTCAAATTTAAAGATATTTCTGATAAGTTGTCTGCGATCAGTGAACCCATATCTCATAAAAACCACATCTCCTATATTTTAGAGGGTCTTGGAGTTGAGTACAATGCTTTTGTCACCTCCATCCAAAACAGGGGGGATATTCCAACGCTTGAGGATGTTCGCACACTTCTTCTCAGTTATGATTATCGTCTTGAACGACAAAACTCAGTGGATCAGTTGAATAATATACAAGCAAATTTGGCCAATCTTCGATTTAATCAGAATTCAAACAATCGGCGATAG

Protein sequence

MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNSNNRR
Homology
[Close]
BLAST of ClCG10G007770 vs. TrEMBL
Match: A5BWU6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010428 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           M +IV ++TA  +W++  Q Y +SS  +V  L  +LQ   KD L+  +Y+ K K I + L
Sbjct: 1   MAQIVGYSTAVEIWNAFNQIYSASSMTRVTELPTKLQMPKKDGLSAGEYIQKLKSICNSL 60

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           + I E +S KNH+ Y+  GL  EYN FVTSIQNR D PT+E + +LLLSYD+ LE+QNS+
Sbjct: 61  ATIGELVSEKNHLIYLFSGLDXEYNPFVTSIQNRSDQPTIEQIHSLLLSYDFHLEQQNSI 120

Query: 121 DQLNNIQANLANL 134
             L+  Q ++A L
Sbjct: 121 -SLHYAQVHMAYL 132

[Close]
BLAST of ClCG10G007770 vs. TrEMBL
Match: W9R2U2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003563 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-23
Identity = 55/133 (41.35%), Postives = 94/133 (70.68%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           +G+IV + TAY +W +L +SY ++S  +++ L  +LQ +  D +   +Y+ K K I+ KL
Sbjct: 2   VGQIVGYQTAYEIWQALERSYAANSRSRLIELLTELQSLKNDGIYADEYVFKKKTIAYKL 61

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           ++I +PIS+ + + Y+ +GLG +YN FV  ++ R + P++E+V +LLL+YD RL+RQNS 
Sbjct: 62  ASIGDPISNADQLIYLFQGLGPKYNTFVIILEARPEQPSIEEVHSLLLTYDARLQRQNSS 121

Query: 121 DQLNNIQANLANL 134
           +QL+  QA+LA+L
Sbjct: 122 EQLSLPQAHLASL 134

[Close]
BLAST of ClCG10G007770 vs. TrEMBL
Match: A5B570_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027734 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 52/143 (36.36%), Postives = 96/143 (67.13%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           M +I+   ++++ W++L +++ SSS  +++ L+++LQ   K SL++  Y++K K  +D L
Sbjct: 1   MAQIIGHNSSHFAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 60

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           +AI EPI  ++ +  +L+GLG +YNA VT+I  R D  ++E V ++LL++++RLE+Q+S+
Sbjct: 61  AAIGEPILEQDQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQQSSI 120

Query: 121 DQLNNIQANLANLRFNQNSNNRR 144
           +Q + I AN A+   N     RR
Sbjct: 121 EQFSPISANYAS-SXNSRGGGRR 142

[Close]
BLAST of ClCG10G007770 vs. TrEMBL
Match: A5BUG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005638 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-21
Identity = 50/142 (35.21%), Postives = 97/142 (68.31%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           M +I+   +++  W++L +++ SSS  +++ L+++LQ   K SL++  Y++K K  +D L
Sbjct: 1   MAQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 60

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           +AI EP+S ++ +  +L GLG +YNA VT+I  + D  ++E V ++LL++++RLE+Q+S+
Sbjct: 61  AAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIKDDKISIEVVHSMLLAFEHRLEQQSSI 120

Query: 121 DQLNNIQANLANLRFNQNSNNR 143
           +Q ++I AN A+   ++ S  R
Sbjct: 121 EQFSSISANYASSSNSRGSGRR 142

[Close]
BLAST of ClCG10G007770 vs. TrEMBL
Match: A5B195_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037882 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-21
Identity = 53/142 (37.32%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 1    MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
            M +I+   +++  W++L +++ SSS  +++ L+++LQ   K SL++  Y++K K  +D L
Sbjct: 950  MAQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 1009

Query: 61   SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
            +AI EP+S ++ +  +L GLG +YNA VT+I  R D  ++E V ++LL++++RLE+Q+S+
Sbjct: 1010 AAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQQSSI 1069

Query: 121  DQLNNIQANLANLRFNQNSNNR 143
             Q + I AN A+     +SNNR
Sbjct: 1070 KQFSPISANYAS-----SSNNR 1086

[Close]
BLAST of ClCG10G007770 vs. TAIR10
Match: AT5G48050.1 (AT5G48050.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-10
Identity = 32/127 (25.20%), Postives = 64/127 (50.39%), Query Frame = 1 

Query: 9   TAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPIS 68
           TA  +W SL   +  +   + L  + +L+    D L++ +Y  K K +SD L+ +  PIS
Sbjct: 96  TARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPIS 155

Query: 69  HKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSVDQLNNIQA 128
            +  + ++L GL  +Y+  +  I+++   P+  + R++LL  + RL  ++     +    
Sbjct: 156 DRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHP 215

Query: 129 NLANLRF 136
           +L+N+ F
Sbjct: 216 SLSNVLF 222

[Close]
BLAST of ClCG10G007770 vs. NCBI nr
Match: gi|147865501|emb|CAN79393.1| (hypothetical protein VITISV_010428 [Vitis vinifera])

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           M +IV ++TA  +W++  Q Y +SS  +V  L  +LQ   KD L+  +Y+ K K I + L
Sbjct: 1   MAQIVGYSTAVEIWNAFNQIYSASSMTRVTELPTKLQMPKKDGLSAGEYIQKLKSICNSL 60

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           + I E +S KNH+ Y+  GL  EYN FVTSIQNR D PT+E + +LLLSYD+ LE+QNS+
Sbjct: 61  ATIGELVSEKNHLIYLFSGLDXEYNPFVTSIQNRSDQPTIEQIHSLLLSYDFHLEQQNSI 120

Query: 121 DQLNNIQANLANL 134
             L+  Q ++A L
Sbjct: 121 -SLHYAQVHMAYL 132

[Close]
BLAST of ClCG10G007770 vs. NCBI nr
Match: gi|703100176|ref|XP_010096851.1| (hypothetical protein L484_003563 [Morus notabilis])

HSP 1 Score: 115.2 bits (287), Expect = 9.7e-23
Identity = 55/133 (41.35%), Postives = 94/133 (70.68%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           +G+IV + TAY +W +L +SY ++S  +++ L  +LQ +  D +   +Y+ K K I+ KL
Sbjct: 2   VGQIVGYQTAYEIWQALERSYAANSRSRLIELLTELQSLKNDGIYADEYVFKKKTIAYKL 61

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           ++I +PIS+ + + Y+ +GLG +YN FV  ++ R + P++E+V +LLL+YD RL+RQNS 
Sbjct: 62  ASIGDPISNADQLIYLFQGLGPKYNTFVIILEARPEQPSIEEVHSLLLTYDARLQRQNSS 121

Query: 121 DQLNNIQANLANL 134
           +QL+  QA+LA+L
Sbjct: 122 EQLSLPQAHLASL 134

[Close]
BLAST of ClCG10G007770 vs. NCBI nr
Match: gi|147771187|emb|CAN67546.1| (hypothetical protein VITISV_027734 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-21
Identity = 52/143 (36.36%), Postives = 96/143 (67.13%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           M +I+   ++++ W++L +++ SSS  +++ L+++LQ   K SL++  Y++K K  +D L
Sbjct: 1   MAQIIGHNSSHFAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 60

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           +AI EPI  ++ +  +L+GLG +YNA VT+I  R D  ++E V ++LL++++RLE+Q+S+
Sbjct: 61  AAIGEPILEQDQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQQSSI 120

Query: 121 DQLNNIQANLANLRFNQNSNNRR 144
           +Q + I AN A+   N     RR
Sbjct: 121 EQFSPISANYAS-SXNSRGGGRR 142

[Close]
BLAST of ClCG10G007770 vs. NCBI nr
Match: gi|147839743|emb|CAN77295.1| (hypothetical protein VITISV_005638 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-21
Identity = 50/142 (35.21%), Postives = 97/142 (68.31%), Query Frame = 1 

Query: 1   MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
           M +I+   +++  W++L +++ SSS  +++ L+++LQ   K SL++  Y++K K  +D L
Sbjct: 1   MAQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 60

Query: 61  SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
           +AI EP+S ++ +  +L GLG +YNA VT+I  + D  ++E V ++LL++++RLE+Q+S+
Sbjct: 61  AAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIKDDKISIEVVHSMLLAFEHRLEQQSSI 120

Query: 121 DQLNNIQANLANLRFNQNSNNR 143
           +Q ++I AN A+   ++ S  R
Sbjct: 121 EQFSSISANYASSSNSRGSGRR 142

[Close]
BLAST of ClCG10G007770 vs. NCBI nr
Match: gi|147853054|emb|CAN82769.1| (hypothetical protein VITISV_037882 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 53/142 (37.32%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 1    MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKL 60
            M +I+   +++  W++L +++ SSS  +++ L+++LQ   K SL++  Y++K K  +D L
Sbjct: 950  MAQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 1009

Query: 61   SAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSV 120
            +AI EP+S ++ +  +L GLG +YNA VT+I  R D  ++E V ++LL++++RLE+Q+S+
Sbjct: 1010 AAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQQSSI 1069

Query: 121  DQLNNIQANLANLRFNQNSNNR 143
             Q + I AN A+     +SNNR
Sbjct: 1070 KQFSPISANYAS-----SSNNR 1086

The following BLAST results are available for this feature:
BLAST of ClCG10G007770 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BWU6_VITVI1.2e-2445.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010428 PE=4 SV=1[more]
W9R2U2_9ROSA6.8e-2341.35Uncharacterized protein OS=Morus notabilis GN=L484_003563 PE=4 SV=1[more]
A5B570_VITVI2.2e-2136.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027734 PE=4 SV=1[more]
A5BUG6_VITVI3.7e-2135.21Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005638 PE=4 SV=1[more]
A5B195_VITVI4.8e-2137.32Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037882 PE=3 SV=1[more]
BLAST of ClCG10G007770 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48050.14.5e-1025.20 Retrotransposon gag protein (InterPro:IPR005162)[more]
BLAST of ClCG10G007770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147865501|emb|CAN79393.1|1.8e-2445.86hypothetical protein VITISV_010428 [Vitis vinifera][more]
gi|703100176|ref|XP_010096851.1|9.7e-2341.35hypothetical protein L484_003563 [Morus notabilis][more]
gi|147771187|emb|CAN67546.1|3.1e-2136.36hypothetical protein VITISV_027734 [Vitis vinifera][more]
gi|147839743|emb|CAN77295.1|5.3e-2135.21hypothetical protein VITISV_005638 [Vitis vinifera][more]
gi|147853054|emb|CAN82769.1|7.0e-2137.32hypothetical protein VITISV_037882 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043167 ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G007770.1ClCG10G007770.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..143
score: 1.7
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 1..143
score: 1.7
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..115
score: 9.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G007770Melon (DHL92) v3.6.1medwcgB402
ClCG10G007770Silver-seed gourdcarwcgB0914
ClCG10G007770Silver-seed gourdcarwcgB0991
ClCG10G007770Cucumber (Chinese Long) v3cucwcgB194
ClCG10G007770Watermelon (97103) v2wcgwmbB038
ClCG10G007770Wax gourdwcgwgoB098
ClCG10G007770Cucumber (Gy14) v1cgywcgB444
ClCG10G007770Cucurbita maxima (Rimu)cmawcgB283
ClCG10G007770Cucurbita maxima (Rimu)cmawcgB614
ClCG10G007770Cucurbita moschata (Rifu)cmowcgB278
ClCG10G007770Cucurbita moschata (Rifu)cmowcgB615
ClCG10G007770Wild cucumber (PI 183967)cpiwcgB190
ClCG10G007770Cucumber (Chinese Long) v2cuwcgB189
ClCG10G007770Melon (DHL92) v3.5.1mewcgB416
ClCG10G007770Watermelon (97103) v1wcgwmB054
ClCG10G007770Cucurbita pepo (Zucchini)cpewcgB195
ClCG10G007770Cucurbita pepo (Zucchini)cpewcgB349
ClCG10G007770Bottle gourd (USVL1VR-Ls)lsiwcgB318
ClCG10G007770Cucumber (Gy14) v2cgybwcgB174