ClCG10G007220 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G007220
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ras-related protein Rab-1A
Location	CG_Chr10 : 10436986 .. 10440776 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCGTTTGTGAGATTGTTCGTTGGGAAAGAAGAATAAATCGTTGAGGAAAGAAGAAAAGTCTTCAAAGGTATTTTCTTATTCCCTCTTATTTTATGCTTAATTTACTGTATTTTGATGTATGTTTATTTTCCTGTAAATGTGAATTAAAATCAAAGTAAAAGCGATGTCTCGCTTTTGCCGCAGAATTCAATTCCTTTCAATTAGTATGAGAGCCAAAACCGTTGTTTTGTTTTGAATTTAATGGAGGGAAGAAGAGAAAGAGAAAGAGAAAGAGAAAACTTTAATTAATAATTTAGTTCTCTTTTTAGAAGAAAAAAATAATAATCAAAATTAAAAAATAAAATCATCAAACGGGTCTCTTACTTCACTCCCACTTTCTCTCCTTCGCTTTCGGTCCGAAGACTCCGTGAGAAAACCAAAGGACACAGATTTTCCCATTTTCGATTCAAGCCATGAGCAACGAATAGTATGTTATACTTGAAATTCAGTTCTTCATTTTTCAGTTTCTGAATTTTCCTTCCTCAATCGAACTCCTCAGATATCTTGTTACTTCTTTATGCTTTTTTCCCTTTCCCAGTGATTATTTGTTCAAGCTCTTGCTAATCGGCGACTCTTCCGTTGGAAAATCATGCCTTCTTCTCAGATTTGCGGTTAGTTCATTGTAGAACTTTTGATATCTGCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTAATTTCATCAGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTCTCTTTTTCGTTAATTTCATCAGTTTATGTATTGGATTGTGGAAATGGGTGATGATTTAGGGCTTTATCTCGGGTTTTTTTTAGGGGCTATCTTCATCAGTACAGCAAAAAGCTAATTGCTTTGTTTTTATTTTCCCTGTTTTTTCAGGATGATTCCTATGTGGATAGCTATATAAGTACAATTGGAGTTGATTTTGTGAGTCTCGAAACCGTTGCCATTCTTTTCTTTTTTAAAAAAATTGCAAATAGAGCTGTTATGGGCCATTGCCTGTGTATTTTACTCCTTATGGCTAATCTTCTGTGATTTGTTTTCAGAAAATCAGAACGGTGGAACTGGATGGGAAGACCATTAAGCTCCAGATTGTGAGTGGGCTTGCACAGTTTCTTGTTTTTATAAATTTTCTTTCTTATTCATAGTGGGTATTTATCTTGCGTGATTAAACATTTAATGGCCTTAGTGACTTGTGAGAGCTTATACATCTGGGAAATAAACTTTTTTTTTTGTCCTGGTTTTAGATACTGACTGAAGCTTAGCTTTTCATCTATTCAATTCAGTTGCATGTTCCTATATATATTTATGTATGTATGTATATATGATCTTGTAACCTGCTGTTACTTTCTAGTGCTCTGGCTAAAAGTAAGCCTTTTTGTGATGAAAGGTTAAAACAATTTTCTTTTTTTCAGTTTCTCTATTAATATGAAACTTAAATTTCAGACAACATCCATCATCTTGGTACAAGTCAGATGCTTTACTTCGAAATAGGTTGTGGTGTTGCTATTTTATCCATTTCAGTCATATTTTACATGCCAGATTCCATCTTCTATGCAAGTCTATCTGACATAAAAGCTGTTGTAATTATTAATAGACGAACAGGAAATGCTGGATAATGTTGCTATGCAAACATTGGGGATATGAAAGTGAATGTGCAGTTACCTTTACAATTATTGTTGACTGTCTGTCTTCCCTTTTTTTATGAAAGCTGTTTTCCTCATCATTTCAAGGACTGTTGAAACCTAATTTGATATGCAGAAGACTGGACTGATTCTATTGTTTTATTCTTTTTAGTGGGACACTGCTGGTCAGGAGAGATTCAGGACTATAACGAGCAGCTATTACAGAGGTGCACATGGAATAATTGTAAGAATCTTCCCTGTTAAGTTCAGGGATCAAACTTTAGTATGGTGAATTTATGAGATCTCTCTCATATTTATTCTTAGCATGTAGCTTAGATTAGAACTGTAGTTTCATGGCTCTTGATTGGAAGATTTTGTTCGAATGTCATATTGTTATTAGCACTATCAGCCCTTAAGCTAATATCAGCTTGTATTCGTTGTGCTGTGGAAAAAATGAGCCAATATCTAGTTAACTTGGGAGGATGCATTCTGATTTCTTAAAATAGCTCGCCTAGAAAGTGAATTGGGGATTGTTTTTTGTTTGTTTCTTTTTTGGGTCAGGTTCATTAGTTGACTTTTACGTCAAAGCATTGCATCGTTATTACTATATTTTGTTTGAATTGCAACAGATTGTTTATGATGTCACTGAGATGGAGAGCTTTAACAACGTCAAGCAATGGTTGAATGAGATTGATAGATATGCTAATGATACTGTATGCAAGCTTTTAGTTGGAAATAAGTGCGATTTAGTTGAGAACAAGGTTGTCGACACACAGACAGCAAAGGTATAATTTTTATTTTAGCTGTGCCATAATTCTTAAACTTCAACTTTTCTTTTCGTTTGCTTCCACTTTAAGTTTTTCGGCAGGACCAGCCTATTAATATTTCAGTGTTTTGGCACCACAATTTTCTTGTTCCGTGTATACTCAACGAGTGATTTAAAAGGAATACAAATTTTTAGCAAGTTCATTTAGCCACATTTGATCAAATGTTCCCATTATTTTCAATGACCTTCAATGTAAATCGAGTGTACTTTTGTTTCTTCACTTCAAGTTCTAATATCATTCTGTCAAGTATCATTAGTTTTAGGTCTTGTCCCTGTCTCGCTCATGACCTTGCCTCTTCCACCTGCTTACTTCTCCTTGGCCTGCCCTCGAGAATATAGAAGATAAGTTAACTTAATACTTGATTTATTGTATTTTCCTCTTCATGGATGGATTGCAGGCATTTGCAGATGAGCTCGGAATCCCTTTTCTAGAGACGAGTGCCAAAGACTCTATCAACGTTGAACAAGCTTTCTTAACTATGGCTGCTGAAATAAAGAAAAAGTAATGACCATTCTTCCCGTTACTTTTCCCCCTGGCCCTTTTATAATTTTAATATTGTGGCATGATGTTTTTATTCCCCATTTTTTTTCTTGGCTTTTGCTCATTCAATATCGTTGAAAAATTCAATAGTATAGTTCTATCAAGCTGCTTATCTGGAAAGTGGACTTCTTCCATTATTGGCTTAATGTTGAATCTCTCTCTCGTAATGCTTCGTTTCTGACCTTTGAAAATGTATTTTAGGATGGGGAGCCAGCCAACTTCGTCCAAGTCGTCAGGAAATGTGCAAATGAAGGGACAGCCAATTGAGCAAAAGAGCAGCTGTTGCAGTTGAGCACTTTCTCACGCCTAATTATATAATGGTAAAATCTAAGTTAACAAGTTTCTTAAGATGATGAAATTGTCTTTACTTTGTTGTTGGGTCAAGGATCTCTATGTAATTGTGAATTATTCCCTGTTTGAATCCTTCTGTGTATAAATGCTTTATGACAGTCACCTTTGGATACTCTCTCCCTCTCCCAATCATTTCTAAGTACTAAAGTCTAAAGAGAATTATGTCAGTGTAGTTTGGAGTAAAGAAAATCATTCTGAC

mRNA sequence

CCCCGTTTGTGAGATTGTTCGTTGGGAAAGAAGAATAAATCGTTGAGGAAAGAAGAAAAGTCTTCAAAGACTCCGTGAGAAAACCAAAGGACACAGATTTTCCCATTTTCGATTCAAGCCATGAGCAACGAATACTCTTGCTAATCGGCGACTCTTCCGTTGGAAAATCATGCCTTCTTCTCAGATTTGCGGATGATTCCTATGTGGATAGCTATATAAGTACAATTGGAGTTGATTTTAAAATCAGAACGGTGGAACTGGATGGGAAGACCATTAAGCTCCAGATTTGGGACACTGCTGGTCAGGAGAGATTCAGGACTATAACGAGCAGCTATTACAGAGGTGCACATGGAATAATTATTGTTTATGATGTCACTGAGATGGAGAGCTTTAACAACGTCAAGCAATGGTTGAATGAGATTGATAGATATGCTAATGATACTGTATGCAAGCTTTTAGTTGGAAATAAGTGCGATTTAGTTGAGAACAAGGTTGTCGACACACAGACAGCAAAGGCATTTGCAGATGAGCTCGGAATCCCTTTTCTAGAGACGAGTGCCAAAGACTCTATCAACGTTGAACAAGCTTTCTTAACTATGGCTGCTGAAATAAAGAAAAAGATGGGGAGCCAGCCAACTTCGTCCAAGTCGTCAGGAAATGTGCAAATGAAGGGACAGCCAATTGAGCAAAAGAGCAGCTGTTGCAGTTGAGCACTTTCTCACGCCTAATTATATAATGGTAAAATCTAAGTTAACAAGTTTCTTAAGATGATGAAATTGTCTTTACTTTGTTGTTGGGTCAAGGATCTCTATGTAATTGTGAATTATTCCCTGTTTGAATCCTTCTGTGTATAAATGCTTTATGACAGTCACCTTTGGATACTCTCTCCCTCTCCCAATCATTTCTAAGTACTAAAGTCTAAAGAGAATTATGTCAGTGTAGTTTGGAGTAAAGAAAATCATTCTGAC

Coding sequence (CDS)

ATGGAGAGCTTTAACAACGTCAAGCAATGGTTGAATGAGATTGATAGATATGCTAATGATACTGTATGCAAGCTTTTAGTTGGAAATAAGTGCGATTTAGTTGAGAACAAGGTTGTCGACACACAGACAGCAAAGGCATTTGCAGATGAGCTCGGAATCCCTTTTCTAGAGACGAGTGCCAAAGACTCTATCAACGTTGAACAAGCTTTCTTAACTATGGCTGCTGAAATAAAGAAAAAGATGGGGAGCCAGCCAACTTCGTCCAAGTCGTCAGGAAATGTGCAAATGAAGGGACAGCCAATTGAGCAAAAGAGCAGCTGTTGCAGTTGA

Protein sequence

MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS

Homology

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BLAST of ClCG10G007220 vs. Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-41
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWL+EIDRYAN++VCKLL+GNK D+VE+KVV T+T +A ADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSS--GNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLT+A EIKKKMGSQ  ++K+S  G VQMKGQPI+Q +  C
Sbjct: 153 KDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202

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BLAST of ClCG10G007220 vs. Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-38
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 2   ESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAK 61
           ESFNNVKQWLNEIDRYA++ V KLLVGNKCDL EN+VV  +  KA ADE+GIPFLETSAK
Sbjct: 94  ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAK 153

Query: 62  DSINVEQAFLTMAAEIKKKMGSQP-TSSKSSGNVQMKGQPIEQKSSCCS 110
           D+ NVE+AF+TMA EIK +M SQP T++     VQM+GQP+ Q+SSCCS
Sbjct: 154 DATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS 202

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BLAST of ClCG10G007220 vs. Swiss-Prot
Match: RAD2C_ARATH (Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-37
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           +ESFNNVKQWLNEIDRYA++ V KLLVGNKCDL   KVV T+TAKAFADELGIPFLETSA
Sbjct: 93  LESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKVVSTETAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           K++ NVE+AF+ M A IK +M SQP        VQ++GQP+ Q+S CCS
Sbjct: 153 KNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQIRGQPVNQQSGCCS 201

[Close]

BLAST of ClCG10G007220 vs. Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-37
Identity = 75/109 (68.81%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 2   ESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAK 61
           ESFNNVKQWLNEIDRYA+D V KLLVGNK DL  NKVV T+TAKAFADE+GIPF+ETSAK
Sbjct: 94  ESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAK 153

Query: 62  DSINVEQAFLTMAAEIKKKMGSQPTSSKS-SGNVQMKGQPIEQKSSCCS 110
           ++ NV+QAF+ MAA IK +M SQP ++ +    VQ++GQP+ QK+SCCS
Sbjct: 154 NATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCS 202

[Close]

BLAST of ClCG10G007220 vs. Swiss-Prot
Match: RAD2B_ARATH (Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-36
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           +ESFNNVKQWLNEIDRYA++ V KLLVGNK DL   KVV T+TAKAFADELGIPFLETSA
Sbjct: 93  LESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTSQKVVSTETAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           K++ NVE+AF+ M A IK +M SQP        VQ++GQP+ Q+S CCS
Sbjct: 153 KNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQIRGQPVNQQSGCCS 201

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BLAST of ClCG10G007220 vs. TrEMBL
Match: A0A0A0L6Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110640 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.7e-53
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           KDS NVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPI+QKSSCCS
Sbjct: 153 KDSTNVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIQQKSSCCS 201

[Close]

BLAST of ClCG10G007220 vs. TrEMBL
Match: B9N0F8_POPTR (GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0004s23520g PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-50
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLTMA EIKKKMG+QPT+SKS+G VQMKGQPIEQK++CC
Sbjct: 153 KDSINVEQAFLTMAGEIKKKMGNQPTASKSTGTVQMKGQPIEQKNNCC 200

[Close]

BLAST of ClCG10G007220 vs. TrEMBL
Match: A0A061DW08_THECC (Ras-related small GTP-binding family protein OS=Theobroma cacao GN=TCM_006131 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.2e-50
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLTMA EIKKKMG+QPT++KS+G V+MKGQPIEQKS+CC
Sbjct: 153 KDSINVEQAFLTMAGEIKKKMGNQPTANKSAGTVEMKGQPIEQKSNCC 200

[Close]

BLAST of ClCG10G007220 vs. TrEMBL
Match: A0A067L5E9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00260 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50
Identity = 98/108 (90.74%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLTMA EIKKKMG+QPT++KS+G+VQ+KGQPI+QKS+CC
Sbjct: 153 KDSINVEQAFLTMAGEIKKKMGNQPTANKSTGSVQVKGQPIQQKSNCC 200

[Close]

BLAST of ClCG10G007220 vs. TrEMBL
Match: A0A0D2TU94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G046500 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADE+GIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADEIGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLTMA EIKKKMG+QPT +KS+G VQMKGQPIEQK++CC
Sbjct: 153 KDSINVEQAFLTMAGEIKKKMGNQPTGNKSAGTVQMKGQPIEQKNNCC 200

[Close]

BLAST of ClCG10G007220 vs. TAIR10
Match: AT3G11730.1 (AT3G11730.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 167.9 bits (424), Expect = 3.4e-42
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWL+EIDRYAN++VCKLL+GNK D+VE+KVV T+T +A ADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSS--GNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLT+A EIKKKMGSQ  ++K+S  G VQMKGQPI+Q +  C
Sbjct: 153 KDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202

[Close]

BLAST of ClCG10G007220 vs. TAIR10
Match: AT4G17530.1 (AT4G17530.1 RAB GTPase homolog 1C)

HSP 1 Score: 157.1 bits (396), Expect = 6.0e-39
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           +ESFNNVKQWLNEIDRYA++ V KLLVGNKCDL   KVV T+TAKAFADELGIPFLETSA
Sbjct: 93  LESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKVVSTETAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           K++ NVE+AF+ M A IK +M SQP        VQ++GQP+ Q+S CCS
Sbjct: 153 KNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQIRGQPVNQQSGCCS 201

[Close]

BLAST of ClCG10G007220 vs. TAIR10
Match: AT5G47200.1 (AT5G47200.1 RAB GTPase homolog 1A)

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-37
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           +ESFNNVKQWLNEIDRYA++ V KLLVGNK DL   KVV T+TAKAFADELGIPFLETSA
Sbjct: 93  LESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTSQKVVSTETAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           K++ NVE+AF+ M A IK +M SQP        VQ++GQP+ Q+S CCS
Sbjct: 153 KNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQIRGQPVNQQSGCCS 201

[Close]

BLAST of ClCG10G007220 vs. TAIR10
Match: AT1G02130.1 (AT1G02130.1 RAS 5)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-36
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 2   ESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAK 61
           ESFNNVKQWL+EIDRYA+D V KLLVGNK DL EN+ +  +TAKAFADE+GIPF+ETSAK
Sbjct: 94  ESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAK 153

Query: 62  DSINVEQAFLTMAAEIKKKMGSQPTSSKS-SGNVQMKGQPIEQKSSCCS 110
           D+ NVEQAF+ M+A IK++M SQP  + +    VQ++GQP+ QK+ CCS
Sbjct: 154 DATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCS 202

[Close]

BLAST of ClCG10G007220 vs. TAIR10
Match: AT3G09900.1 (AT3G09900.1 RAB GTPase homolog E1E)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 3   SFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENK-VVDTQTAKAFADELGIPFLETSAK 62
           SFNN++ W+  I+++A+D+V K+LVGNK D+ E+K  V T   +A ADE GI F ETSAK
Sbjct: 102 SFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161

Query: 63  DSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMK-------GQPIEQKSSCCS 110
            + NVEQ FL++A +IK+++    T ++  G    K            +KS+CCS
Sbjct: 162 TNQNVEQVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANKASSSSTNEKSACCS 216

[Close]

BLAST of ClCG10G007220 vs. NCBI nr
Match: gi|449431876|ref|XP_004133726.1| (PREDICTED: ras-related protein RABD1 isoform X1 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.2e-53
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           KDS NVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPI+QKSSCCS
Sbjct: 153 KDSTNVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIQQKSSCCS 201

[Close]

BLAST of ClCG10G007220 vs. NCBI nr
Match: gi|778676381|ref|XP_011650573.1| (PREDICTED: ras-related protein RABD1 isoform X2 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.2e-53
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 77  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 136

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           KDS NVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPI+QKSSCCS
Sbjct: 137 KDSTNVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIQQKSSCCS 185

[Close]

BLAST of ClCG10G007220 vs. NCBI nr
Match: gi|659102642|ref|XP_008452238.1| (PREDICTED: ras-related protein RABD1 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 5.2e-53
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNN+KQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFA+ELGIPFLETSA
Sbjct: 93  MESFNNIKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFAEELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCCS 110
           KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPI+QKSSCCS
Sbjct: 153 KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIQQKSSCCS 201

[Close]

BLAST of ClCG10G007220 vs. NCBI nr
Match: gi|566168268|ref|XP_006385060.1| (GTP-binding family protein [Populus trichocarpa])

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-50
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLTMA EIKKKMG+QPT+SKS+G VQMKGQPIEQK++CC
Sbjct: 153 KDSINVEQAFLTMAGEIKKKMGNQPTASKSTGTVQMKGQPIEQKNNCC 200

[Close]

BLAST of ClCG10G007220 vs. NCBI nr
Match: gi|590681773|ref|XP_007041173.1| (Ras-related small GTP-binding family protein [Theobroma cacao])

HSP 1 Score: 206.1 bits (523), Expect = 3.2e-50
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 60
           MESFNNVKQWLNEIDRYAND+VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA
Sbjct: 93  MESFNNVKQWLNEIDRYANDSVCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSA 152

Query: 61  KDSINVEQAFLTMAAEIKKKMGSQPTSSKSSGNVQMKGQPIEQKSSCC 109
           KDSINVEQAFLTMA EIKKKMG+QPT++KS+G V+MKGQPIEQKS+CC
Sbjct: 153 KDSINVEQAFLTMAGEIKKKMGNQPTANKSAGTVEMKGQPIEQKSNCC 200

The following BLAST results are available for this feature:

BLAST of ClCG10G007220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RABD1_ARATH	6.0e-41	75.45	Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1	[more]
RIC1_ORYSJ	6.2e-38	69.72	Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2	[more]
RAD2C_ARATH	1.1e-37	67.89	Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=2 SV=1	[more]
YPTM2_MAIZE	5.3e-37	68.81	GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1	[more]
RAD2B_ARATH	3.4e-36	66.97	Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1	[more]

BLAST of ClCG10G007220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Q4_CUCSA	3.7e-53	97.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110640 PE=4 SV=1	[more]
B9N0F8_POPTR	1.0e-50	92.59	GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0004s23520g PE=4 SV=1	[more]
A0A061DW08_THECC	2.2e-50	91.67	Ras-related small GTP-binding family protein OS=Theobroma cacao GN=TCM_006131 PE...	[more]
A0A067L5E9_JATCU	4.9e-50	90.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00260 PE=4 SV=1	[more]
A0A0D2TU94_GOSRA	4.9e-50	90.74	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G046500 PE=4 SV=1	[more]

BLAST of ClCG10G007220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11730.1	3.4e-42	75.45	Ras-related small GTP-binding family protein	[more]
AT4G17530.1	6.0e-39	67.89	RAB GTPase homolog 1C	[more]
AT5G47200.1	1.9e-37	66.97	RAB GTPase homolog 1A	[more]
AT1G02130.1	1.2e-36	65.14	RAS 5	[more]
AT3G09900.1	1.4e-19	42.61	RAB GTPase homolog E1E	[more]

BLAST of ClCG10G007220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431876\|ref\|XP_004133726.1\|	5.2e-53	97.25	PREDICTED: ras-related protein RABD1 isoform X1 [Cucumis sativus]	[more]
gi\|778676381\|ref\|XP_011650573.1\|	5.2e-53	97.25	PREDICTED: ras-related protein RABD1 isoform X2 [Cucumis sativus]	[more]
gi\|659102642\|ref\|XP_008452238.1\|	5.2e-53	96.33	PREDICTED: ras-related protein RABD1 [Cucumis melo]	[more]
gi\|566168268\|ref\|XP_006385060.1\|	1.4e-50	92.59	GTP-binding family protein [Populus trichocarpa]	[more]
gi\|590681773\|ref\|XP_007041173.1\|	3.2e-50	91.67	Ras-related small GTP-binding family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0032588	trans-Golgi network membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0030742	GTP-dependent protein binding
molecular_function	GO:0080115	myosin XI tail binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G007220.1	ClCG10G007220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 2..78 score: 5.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..108 score: 2.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..95 score: 1.06
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 55..77 score: 1.1E-12coord: 20..33 score: 1.1
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..109 score: 8.6
None	No IPR available	PANTHER	PTHR24073:SF490	SUBFAMILY NOT NAMED	coord: 1..109 score: 8.6
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 1..80 score: 2.
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..80 score: 4.3
None	No IPR available	PROFILE	PS51419	RAB	coord: 1..108 score: 17

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G007220	MELO3C016486	Melon (DHL92) v3.5.1	mewcgB416
ClCG10G007220	Cla97C10G190970	Watermelon (97103) v2	wcgwmbB038
ClCG10G007220	CSPI03G06410	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G007220	Cucsa.114260	Cucumber (Gy14) v1	cgywcgB168
ClCG10G007220	CmaCh16G007660	Cucurbita maxima (Rimu)	cmawcgB283
ClCG10G007220	CmoCh16G008290	Cucurbita moschata (Rifu)	cmowcgB278
ClCG10G007220	Lsi05G007280	Bottle gourd (USVL1VR-Ls)	lsiwcgB319
ClCG10G007220	Cp4.1LG14g00510	Cucurbita pepo (Zucchini)	cpewcgB195
ClCG10G007220	CsGy3G006510	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G007220	MELO3C016486.2	Melon (DHL92) v3.6.1	medwcgB402
ClCG10G007220	Carg25380	Silver-seed gourd	carwcgB0546
ClCG10G007220	CsaV3_3G006540	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G007220	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G007220	Watermelon (97103) v1	wcgwmB066
ClCG10G007220	Cucurbita pepo (Zucchini)	cpewcgB349
ClCG10G007220	Bottle gourd (USVL1VR-Ls)	lsiwcgB318
ClCG10G007220	Silver-seed gourd	carwcgB0641
ClCG10G007220	Wax gourd	wcgwgoB086
ClCG10G007220	Cucurbita maxima (Rimu)	cmawcgB614
ClCG10G007220	Cucurbita moschata (Rifu)	cmowcgB615