ClCG10G006380 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G006380
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Vps51/Vps67 family (Components of vesicular transport) protein
Location	CG_Chr10 : 8869828 .. 8870900 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGATGATGTTCCAATGGATGAAAAAGCTAAAAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGACGCTTCAATGTCTGGCTCATCCACGGGTTCATCTAATAGATATGCTTCTCCTTTAGAAGCCATAAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTTTGGTACGTCTTAAGCCCTGTCTCTCTCTCCCTTTTTCTTTTTCTGTATATTTTCTTAATTATTTTTTGATCTATTATGTTCAGTATATCGGATATATGCATTTTTTTTACACTTTTTTCTTTTTTTTTTGGGGGGGGGGGGGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAACTGAACTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGTGTGTGTCAGGAAAAGGAGTTTCTTATGGTCTCCTATTAAAGTACTTTTTATTAATAGCAAGAGTAATTTCCCTTCATAAGGTGAAAAAGTACAAAATTCATCCATTTCATTAGATCGATTCGGGATGTGATATGGTTCTGAAGGACAAACTGGATATGAAGAGAAACTGCTGCATTAAAATGTACAGTAGGTTGCATATTGCCCCTGGAGGTTTCCTCTCTTTTGAATATTTCATTACATTGATGAAATATTGA

mRNA sequence

ATGGAGATCGATGATGTTCCAATGGATGAAAAAGCTAAAAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGACGCTTCAATGTCTGGCTCATCCACGGGTTCATCTAATAGATATGCTTCTCCTTTAGAAGCCATAAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTTTGATCGATTCGGGATGTGATATGGTTCTGAAGGACAAACTGGATATGAAGAGAAACTGCTGCATTAAAATGTACAGTAGGTTGCATATTGCCCCTGGAGGTTTCCTCTCTTTTGAATATTTCATTACATTGATGAAATATTGA

Coding sequence (CDS)

ATGGAGATCGATGATGTTCCAATGGATGAAAAAGCTAAAAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGACGCTTCAATGTCTGGCTCATCCACGGGTTCATCTAATAGATATGCTTCTCCTTTAGAAGCCATAAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTTTGATCGATTCGGGATGTGATATGGTTCTGAAGGACAAACTGGATATGAAGAGAAACTGCTGCATTAAAATGTACAGTAGGTTGCATATTGCCCCTGGAGGTTTCCTCTCTTTTGAATATTTCATTACATTGATGAAATATTGA

Protein sequence

MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSILIDSGCDMVLKDKLDMKRNCCIKMYSRLHIAPGGFLSFEYFITLMKY

Homology

[Close]

BLAST of ClCG10G006380 vs. TrEMBL
Match: A0A0A0K869_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G324110 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-24
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. TrEMBL
Match: M5WE90_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001696mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          ME+DDVP+D+KAKRMRDLLSSFYS D SMS   T SS++YA+ L+AINTTSF+PDQYM +
Sbjct: 1  MEVDDVPLDDKAKRMRDLLSSFYSLDHSMSSPDTSSSSKYAT-LDAINTTSFDPDQYMHL 60

Query: 61 LI-DSGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVHKSNLEGLLQKHVEM 76

[Close]

BLAST of ClCG10G006380 vs. TrEMBL
Match: K4AXJ4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          M +DDVPMD+KAKRMRDLLSSFYSPD S    +  +S+R+A+ L+ INTT+F+ DQYM++
Sbjct: 1  MGVDDVPMDDKAKRMRDLLSSFYSPDPSSPSKTPNASSRFAT-LDTINTTTFDADQYMNL 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  +DM
Sbjct: 61 LVQKSNLEGLLQRHVDM 76

[Close]

BLAST of ClCG10G006380 vs. TrEMBL
Match: W9QME9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009752 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-12
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          ME+DDVP+D+KAKRMRDLLSSFY+PD S S  S  +++   + L+AIN+ SF+PDQYM++
Sbjct: 1  MEVDDVPLDDKAKRMRDLLSSFYAPDPSASAPSFPATH---ASLDAINSASFDPDQYMNL 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSSLEGLLQRHVEM 74

[Close]

BLAST of ClCG10G006380 vs. TrEMBL
Match: V4U6E4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018936mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          M +DDVP+D+KAKRMRDLLSSFY+PD SM   S+G   +Y  PL+AI+T SF+ DQYM++
Sbjct: 1  MAVDDVPLDDKAKRMRDLLSSFYAPDPSMPNESSG---KYV-PLDAIDTNSFDADQYMNL 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSSLEGLLQRHVEM 73

[Close]

BLAST of ClCG10G006380 vs. TAIR10
Match: AT4G02030.2 (AT4G02030.2 Vps51/Vps67 family (components of vesicular transport) protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-11
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASM--SGSSTGSSNRYASPLEAINTTSFNPDQYM 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+  SGSS  +S       + IN+TSF+ DQYM
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTSGSSINAS------FDNINSTSFDADQYM 58

Query: 61 SILI 63
           ++I
Sbjct: 61 DLMI 58

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: gi|449443748|ref|XP_004139639.1| (PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: gi|778726675|ref|XP_011659142.1| (PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: gi|700189284|gb|KGN44517.1| (hypothetical protein Csa_7G324110 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: gi|659123131|ref|XP_008461506.1| (PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMS S TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSSSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

[Close]

BLAST of ClCG10G006380 vs. NCBI nr
Match: gi|659123133|ref|XP_008461507.1| (PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLEAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMS S TGSSNRYASPLEAINTTSFNPDQYM+I
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSSSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LID-SGCDMVLKDKLDM 77
          L+  S  + +L+  ++M
Sbjct: 61 LVQKSNLEGLLQRHVEM 77

The following BLAST results are available for this feature:

BLAST of ClCG10G006380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K869_CUCSA	1.6e-24	79.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G324110 PE=4 SV=1	[more]
M5WE90_PRUPE	1.3e-15	61.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001696mg PE=4 SV=1	[more]
K4AXJ4_SOLLC	3.6e-13	54.55	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
W9QME9_9ROSA	6.9e-12	51.95	Uncharacterized protein OS=Morus notabilis GN=L484_009752 PE=4 SV=1	[more]
V4U6E4_9ROSI	8.9e-12	53.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018936mg PE=4 SV=1	[more]

BLAST of ClCG10G006380 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02030.2	3.0e-11	56.25	Vps51/Vps67 family (components of vesicular transport) protein	[more]

BLAST of ClCG10G006380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443748\|ref\|XP_004139639.1\|	2.3e-24	79.22	PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X1 [Cu...	[more]
gi\|778726675\|ref\|XP_011659142.1\|	2.3e-24	79.22	PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X2 [Cu...	[more]
gi\|700189284\|gb\|KGN44517.1\|	2.3e-24	79.22	hypothetical protein Csa_7G324110 [Cucumis sativus]	[more]
gi\|659123131\|ref\|XP_008461506.1\|	3.8e-24	79.22	PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X2 [Cu...	[more]
gi\|659123133\|ref\|XP_008461507.1\|	3.8e-24	79.22	PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X3 [Cu...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006893	Golgi to plasma membrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000145	exocyst
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006380.1	ClCG10G006380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G006380	Cla011739	Watermelon (97103) v1	wcgwmB066
ClCG10G006380	CmoCh16G008690	Cucurbita moschata (Rifu)	cmowcgB278
ClCG10G006380	Lsi05G006730	Bottle gourd (USVL1VR-Ls)	lsiwcgB318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G006380	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G006380	Melon (DHL92) v3.6.1	medwcgB402
ClCG10G006380	Silver-seed gourd	carwcgB0212
ClCG10G006380	Silver-seed gourd	carwcgB0641
ClCG10G006380	Cucumber (Chinese Long) v3	cucwcgB194
ClCG10G006380	Watermelon (97103) v2	wcgwmbB038
ClCG10G006380	Wax gourd	wcgwgoB080
ClCG10G006380	Wax gourd	wcgwgoB105
ClCG10G006380	Cucumber (Gy14) v1	cgywcgB074
ClCG10G006380	Cucurbita maxima (Rimu)	cmawcgB283
ClCG10G006380	Cucurbita maxima (Rimu)	cmawcgB614
ClCG10G006380	Cucurbita moschata (Rifu)	cmowcgB615
ClCG10G006380	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G006380	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G006380	Melon (DHL92) v3.5.1	mewcgB416
ClCG10G006380	Cucurbita pepo (Zucchini)	cpewcgB195
ClCG10G006380	Cucurbita pepo (Zucchini)	cpewcgB349