ClCG10G006160 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G006160
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionYGGT family protein
LocationCG_Chr10 : 8416139 .. 8418275 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTTTTGCGTCAACTACTGAAAACTACATCAGATATTTTTCATTCATTGGCTTATGAGAGTCCATTTTTGCATAAATTGCTCTTGTTTCCTTCTGAGTTCCATAGTTTTCGTCACCAAGTAACTAACTGCAATTGTATTTGGATGGTTCTGTGAAATTCTGATTTTTGTTTTTTATGCAATTGTTCTGTTTCTTGCACTTCCATTCGTTTGTACAGTTTTATTTCAGCTAGAATGTAACATGCTTCTTACGGTTGATTTTTCCTAGGGGTTTCGATTTTCTAATCTCTATTGAATTGTATTTCAGATCCGATTTTGCTACAATTTTGCCGGGGGATTTCCAAGCTTTCTCTAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGTAGGACTTGTAGTCGTTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCAATAGGTTAGTTTTGACTTGGTTTTGAAGCACACCAACCGCCATTGTTGGTCCACTAAGGTAACTTTTATTCGTTTTTATATTACTATTAAAAAAGAAGAAAGAGTGTTGAAGTTTTCACATTGGAATAAGATTTCTGAACTAAACATAGTAGCAAGCTTTTATATCCTTAAAGAGGGAAGTATGTTTAGTGGGTGTTTGGCCAGAGTGATTTAGAAGTTGAAAGTTGAAATTGTACATTGTTTAAATTTTTAGCTATGTTATTCCAACTTTTATTCAAATTCACACTACTAATTTAGTCATATGTTATCTTTTGCTTCAGAAACAATTCTTAAAAATTGTTGTTTAACAAATATTATGGACAAGAAAACCCAAGAACTTTTGCTTACATATTAGAAGACAGTTAGTTTAACTTAAAATTACCTTTTAAAATACTTTGCCTAAATTATTTTCCAAACTTTTAGGAGTTGTTTGGGATGTTAAGTTCTTGTAGTTTATTTGATTTTAATATGTATTAATTTAGGGTTATAGTTGGGTTAAGACCTTTGTATTTTATGGCGATGTTTATGTCTAGTAGACCGTAGTGGCAACGAACCAAATATCTTTTCGGGGTATATTAGTGGGCATATTAGTGTAGTGCTAAAAACGTACATAGATTTGACGAACTCAAATATCTAAAAAAAAATATTAAAGGAAATGTGTGTGTTTGAAAAGTGAGAGTAGAAGCCATGTTTTTTTAATTTATCCATTTTGATATTTGTTTCTATTTTTTCTGAGGGAGAGGGGGCCGTTAGTGGATTGGAGAGTATGTGTTGGACCTGTGGATTCATCTTGTAGATATGCACTTAAGATTTTTTAATTTATCATTTTTCTTTTCCTTGAATGACAATATCTATTTTGATAGGTTTTATGGACTCATTGTCGATTTTTTTTGGTGTGTTGTTCAAATGTGTTGTGACTGATCCCATTACTTGTGAGCGAGAGAGGAAATAAACAATGAATGCATCCTTTTTCTTTTTAGAAAATGAATTAAATCTTGTGAATTTGTGTTGTTTTAGGATTTTCAAGCACAACGTGTTCTAGTGCTTTTCTCTGGTTGATCAAGGTGAGAACTTCTTCAACCATTCTGAATCAAACATCTTTATTTACTTTTAGTAATATATTCTAGACTTTTCCTCCAAATTACATGACAAATTCTTCAATTTTTGTTTTATGTATATTTCAAAATTTTCTAGAGTTAAATCAAGCTAGATGAGAAGCCTAGAACATACAACTTGAAGATTGTTTTGCTAGCCTGCTAAGCATGATTAGAAAGGTCTGACTCTCTGATGTACACCATTAAAAACTCTAACTAATATGCTAAAAAACTCAATCTCAAATTTGCTTTCATTCTTTTCTCAATGCTAGTAACTCTCATAAAAATTATTATTAATCTAAGAAATTCGTTCCACCATTAAATTGTTTTCAAAGAATCTTGATGTCAACTTCAAAATAATCTTTGCTTTCCTAGGTCAAATTGGGTAAATACTTGTGTGTTTTATTATTATTTTTTTTTTTTTCTGGTTAGAATCAAATATCTCAACAATCATCCAATTTTTGTTTTTAATAATAGTAGGTTTTCTATTTTCAATGTTTGTTTAACATTTCTATTATAGCAAAGATTATGATACATCTGTTGTA

mRNA sequence

ATGGGTCTTTTGCGTCAACTACTGAAAACTACATCAGATATTTTTCATTCATTGGCTTATGAGAGTCCATTTTTGCATAAATTGCTCTTATCCGATTTTGCTACAATTTTGCCGGGGGATTTCCAAGCTTTCTCTAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGTAGGACTTGTAGTCGTTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCAATAGCACACCAACCGCCATTGTTGGTCCACTAAGAATCAAATATCTCAACAATCATCCAATTTTTGTTTTTAATAATAGTAGCAAAGATTATGATACATCTGTTGTA

Coding sequence (CDS)

ATGGGTCTTTTGCGTCAACTACTGAAAACTACATCAGATATTTTTCATTCATTGGCTTATGAGAGTCCATTTTTGCATAAATTGCTCTTATCCGATTTTGCTACAATTTTGCCGGGGGATTTCCAAGCTTTCTCTAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGTAGGACTTGTAGTCGTTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCAATAGCACACCAACCGCCATTGTTGGTCCACTAAGAATCAAATATCTCAACAATCATCCAATTTTTGTTTTTAATAATAGTAGCAAAGATTATGATACATCTGTTGTA

Protein sequence

MGLLRQLLKTTSDIFHSLAYESPFLHKLLLSDFATILPGDFQAFSSHNFAAVLPGDSMVGLVVVNGIQNFLSLYNTLLVNSTPTAIVGPLRIKYLNNHPIFVFNNSSKDYDTSVV
Homology
[Close]
BLAST of ClCG10G006160 vs. Swiss-Prot
Match: YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-10
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 16  HSLAYESP-FLHKLLLSDFATILPGDFQ---------AFSSHNFAAVLPGDSMVGLVVVN 75
           HSLA ++P F   + LS    IL  + +         A S+H FAAVLPGDS+ GLVV N
Sbjct: 77  HSLASKNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVAN 136

Query: 76  GIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           G+ NFL++YNT+LV         S P AIV PL
Sbjct: 137 GLINFLNIYNTILVVRLVLTWFPSAPPAIVNPL 169

[Close]
BLAST of ClCG10G006160 vs. TrEMBL
Match: A0A0A0KDJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362410 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-17
Identity = 57/94 (60.64%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 14  IFHSLAYESPFLHKLL-----LSDFATILPG----DFQAFSSHNFAAVLPGDSMVGLVVV 73
           +FHSLA E+PFLHKLL        F   + G    +F+A SSHNFAAVLPGDSM GLVV 
Sbjct: 71  LFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLPGDSMAGLVVA 130

Query: 74  NGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           NGIQNFLSLYNTLLV         +TP AIV PL
Sbjct: 131 NGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPL 164

[Close]
BLAST of ClCG10G006160 vs. TrEMBL
Match: M5XIX1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019472mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 14  IFHSLAYESPFLHKLLL--SDFATILPG-------DFQAFSSHNFAAVLPGDSMVGLVVV 73
           + HSLA ++PFL KLL   S+F ++            +  S+HNFAAVLPGDS+ GLVV 
Sbjct: 31  LLHSLASQNPFLSKLLSLRSEFQSLCHQIRCRKHRQVETLSAHNFAAVLPGDSVAGLVVA 90

Query: 74  NGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           NGI NFL+LYNTLLV         ++P AIVGPL
Sbjct: 91  NGISNFLNLYNTLLVVRLVLTWFPNSPPAIVGPL 124

[Close]
BLAST of ClCG10G006160 vs. TrEMBL
Match: V7AXC1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G082300g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-11
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 14  IFHSLAYESPFLHKL--LLSDFATILP-----GDFQAFSSHNFAAVLPGDSMVGLVVVNG 73
           + H+LA ++PFL+K+  L S F T+       G  ++  +HNFAAVLPGDS+ GLVV NG
Sbjct: 65  LLHTLASQNPFLNKIISLQSQFHTLCVQIRKHGSVRSVGNHNFAAVLPGDSVAGLVVANG 124

Query: 74  IQNFLSLYNTLLV--------NSTPTAIVGPL 91
           + NFL++YNTLL+         + P +IV PL
Sbjct: 125 VSNFLNIYNTLLIVRLVLTWFPNAPPSIVSPL 156

[Close]
BLAST of ClCG10G006160 vs. TrEMBL
Match: I1JU15_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G056000 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 49/113 (43.36%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 3   LLRQLLKTTSDIF----HSLAYESPFLHKLLLSDFATILPGDFQAF-------------S 62
           LL     T +D F    HSLA ++PFL+K+L       LP +F                S
Sbjct: 51  LLHTSFTTAADNFFRFVHSLASQNPFLNKVLS------LPAEFHTLCVQIRKQRNVGLVS 110

Query: 63  SHNFAAVLPGDSMVGLVVVNGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           SHNFAAVLPG S+ GLVV NG+ NFL++YNTLL+         +TP +IV PL
Sbjct: 111 SHNFAAVLPGGSVAGLVVANGVLNFLNIYNTLLIVRLVLTWFPNTPPSIVSPL 157

[Close]
BLAST of ClCG10G006160 vs. TrEMBL
Match: A0A0B2RCT0_GLYSO (Putative membrane protein ylmG OS=Glycine soja GN=glysoja_016299 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 49/113 (43.36%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 3   LLRQLLKTTSDIF----HSLAYESPFLHKLLLSDFATILPGDFQAF-------------S 62
           LL     T +D F    HSLA ++PFL+K+L       LP +F                S
Sbjct: 51  LLHTSFTTAADNFFRFVHSLASQNPFLNKVLS------LPAEFHTLCVQIRKQRNVGLVS 110

Query: 63  SHNFAAVLPGDSMVGLVVVNGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           SHNFAAVLPG S+ GLVV NG+ NFL++YNTLL+         +TP +IV PL
Sbjct: 111 SHNFAAVLPGGSVAGLVVANGVLNFLNIYNTLLIVRLVLTWFPNTPPSIVSPL 157

[Close]
BLAST of ClCG10G006160 vs. TAIR10
Match: AT5G21920.1 (AT5G21920.1 YGGT family protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-11
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 16  HSLAYESP-FLHKLLLSDFATILPGDFQ---------AFSSHNFAAVLPGDSMVGLVVVN 75
           HSLA ++P F   + LS    IL  + +         A S+H FAAVLPGDS+ GLVV N
Sbjct: 77  HSLASKNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVAN 136

Query: 76  GIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           G+ NFL++YNT+LV         S P AIV PL
Sbjct: 137 GLINFLNIYNTILVVRLVLTWFPSAPPAIVNPL 169

[Close]
BLAST of ClCG10G006160 vs. NCBI nr
Match: gi|449452935|ref|XP_004144214.1| (PREDICTED: uncharacterized protein LOC101210772 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 57/94 (60.64%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 14  IFHSLAYESPFLHKLL-----LSDFATILPG----DFQAFSSHNFAAVLPGDSMVGLVVV 73
           +FHSLA E+PFLHKLL        F   + G    +F+A SSHNFAAVLPGDSM GLVV 
Sbjct: 71  LFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLPGDSMAGLVVA 130

Query: 74  NGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           NGIQNFLSLYNTLLV         +TP AIV PL
Sbjct: 131 NGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPL 164

[Close]
BLAST of ClCG10G006160 vs. NCBI nr
Match: gi|659089495|ref|XP_008445540.1| (PREDICTED: uncharacterized protein LOC103488523 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-16
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 14  IFHSLAYESPFLHKLLL--SDFATIL-------PGDFQAFSSHNFAAVLPGDSMVGLVVV 73
           +FHS A E+PFLHKLL   S+F +           +F+A SSHNFAAVLPGDSM GLVV 
Sbjct: 71  LFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLPGDSMAGLVVA 130

Query: 74  NGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           NGIQNFLSLYNTLLV         +TP AIV PL
Sbjct: 131 NGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPL 164

[Close]
BLAST of ClCG10G006160 vs. NCBI nr
Match: gi|470135312|ref|XP_004303461.1| (PREDICTED: uncharacterized protein LOC101299599 [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 8   LKTTSDIFHSLAYESPFLHKLLL--SDFATIL-------PGDFQAFSSHNFAAVLPGDSM 67
           + + +++ HSLA  +PFL+KL    ++F T             ++ S+HNFAAVLPGDS+
Sbjct: 60  IASATELLHSLASRNPFLNKLFSFHAEFRTFCHQVQSTRQNKLKSLSTHNFAAVLPGDSV 119

Query: 68  VGLVVVNGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
            GLVV NG+ NFL+LYNTLLV         ++P AIVGPL
Sbjct: 120 AGLVVANGVSNFLNLYNTLLVCRLVLTWFPNSPPAIVGPL 159

[Close]
BLAST of ClCG10G006160 vs. NCBI nr
Match: gi|658050461|ref|XP_008360949.1| (PREDICTED: uncharacterized protein LOC103424631 [Malus domestica])

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-12
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 12  SDIFHSLAYESPFLHKL--LLSDFATILP-------GDFQAFSSHNFAAVLPGDSMVGLV 71
           S + HSLA ++P L KL  L  +F +I            +A S+HNFAAVLPGDS+ GLV
Sbjct: 64  SQLLHSLASQNPLLSKLISLRCEFQSICHQIGCRKNNQVKALSAHNFAAVLPGDSVAGLV 123

Query: 72  VVNGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           V NGI NFL+LYNTLLV         ++P AIVGPL
Sbjct: 124 VANGISNFLNLYNTLLVVRLVLTWFPNSPPAIVGPL 159

[Close]
BLAST of ClCG10G006160 vs. NCBI nr
Match: gi|596230482|ref|XP_007224287.1| (hypothetical protein PRUPE_ppa019472mg, partial [Prunus persica])

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-12
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 14  IFHSLAYESPFLHKLLL--SDFATILPG-------DFQAFSSHNFAAVLPGDSMVGLVVV 73
           + HSLA ++PFL KLL   S+F ++            +  S+HNFAAVLPGDS+ GLVV 
Sbjct: 31  LLHSLASQNPFLSKLLSLRSEFQSLCHQIRCRKHRQVETLSAHNFAAVLPGDSVAGLVVA 90

Query: 74  NGIQNFLSLYNTLLV--------NSTPTAIVGPL 91
           NGI NFL+LYNTLLV         ++P AIVGPL
Sbjct: 91  NGISNFLNLYNTLLVVRLVLTWFPNSPPAIVGPL 124

The following BLAST results are available for this feature:
BLAST of ClCG10G006160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YLMG2_ARATH7.6e-1046.24YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1[more]
BLAST of ClCG10G006160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDJ4_CUCSA9.9e-1760.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362410 PE=4 SV=1[more]
M5XIX1_PRUPE2.5e-1251.06Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019472mg PE=4 S... [more]
V7AXC1_PHAVU4.8e-1145.65Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G082300g PE=4 SV=1[more]
I1JU15_SOYBN1.4e-1043.36Uncharacterized protein OS=Glycine max GN=GLYMA_04G056000 PE=4 SV=1[more]
A0A0B2RCT0_GLYSO1.4e-1043.36Putative membrane protein ylmG OS=Glycine soja GN=glysoja_016299 PE=4 SV=1[more]
BLAST of ClCG10G006160 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G21920.14.3e-1146.24 YGGT family protein[more]
BLAST of ClCG10G006160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452935|ref|XP_004144214.1|1.4e-1660.64PREDICTED: uncharacterized protein LOC101210772 [Cucumis sativus][more]
gi|659089495|ref|XP_008445540.1|2.4e-1659.57PREDICTED: uncharacterized protein LOC103488523 [Cucumis melo][more]
gi|470135312|ref|XP_004303461.1|2.1e-1246.00PREDICTED: uncharacterized protein LOC101299599 [Fragaria vesca subsp. vesca][more]
gi|658050461|ref|XP_008360949.1|3.6e-1251.04PREDICTED: uncharacterized protein LOC103424631 [Malus domestica][more]
gi|596230482|ref|XP_007224287.1|3.6e-1251.06hypothetical protein PRUPE_ppa019472mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G006160.1ClCG10G006160.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33219FAMILY NOT NAMEDcoord: 43..79
score: 2.7
NoneNo IPR availablePANTHERPTHR33219:SF4SUBFAMILY NOT NAMEDcoord: 43..79
score: 2.7