ClCG10G006000 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G006000
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNAD(P)H-quinone oxidoreductase subunit H, chloroplastic
LocationCG_Chr10 : 7994874 .. 7995913 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGACAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTTGACTTATCCTTACTTTGGATGATGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGTAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAGCCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATATGTTATGGCTTGGCCCTTTTATGGCGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGTAGCCACTGGTATGCGAATGATGCATATTTTTTTCGTATCAGGGGAGTCGCAGCTGATCTACCTCATGGATGGATAGATAAATGTTTGGATTTCTGCGATTATTTTTTGATAGCGGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTCATAAATTGGGGGTTATCAAGACCAATGTTGCGAGCTTCCAGAATGCCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAGTGGCAAAAATAAGGAGATTCATTAGCTCGTTATTTAGTCAGACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTCCTCTTTTGCCACAGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTAAGAGTTTTTTCCTTCGCTGA

mRNA sequence

ATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGACAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGTAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAGCCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATATGTTATGGCTTGGCCCTTTTATGGCGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGTAGCCACTGAACGAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTCATAAATTGGGGGTTATCAAGACCAATGTTGCGAGCTTCCAGAATGCCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTCCTCTTTTGCCACAGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTAAGAGTTTTTTCCTTCGCTGA

Coding sequence (CDS)

ATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGACAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGTAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAGCCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATATGTTATGGCTTGGCCCTTTTATGGCGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGTAGCCACTGAACGAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTCATAAATTGGGGGTTATCAAGACCAATGTTGCGAGCTTCCAGAATGCCATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTCAACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTCCTCTTTTGCCACAGATTCCTTTTCTCCTTTATTTCCATTTTCTAATTAAGAGTTTTTTCCTTCGCTGA

Protein sequence

MERLIEEKLMNGPATRQDLMIVNMGPHHPSMHDVIDCEPILGYLHRGMEKIVENRTIIQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGPFMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYECYDEFDWEVQLAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKPPLLPQIPFLLYFHFLIKSFFLR
Homology
[Close]
BLAST of ClCG10G006000 vs. Swiss-Prot
Match: NDHH_IPOPU (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Ipomoea purpurea GN=ndhH PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 8.8e-102
Identity = 197/314 (62.74%), Postives = 213/314 (67.83%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           M  PATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MTAPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPE+L NIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPERLSNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATE--------RVEGV----------------- 189
           FMADIGAQTPFFYIFREREL+YDLFE AT         R+ GV                 
Sbjct: 121 FMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCN 180

Query: 190 ----GIISGEEVIN----------------------WGLSRPMLRASRMPWDLRKVDHYE 247
               G+   +++I                       WGLS PMLRAS + WDLRK+D YE
Sbjct: 181 YFLTGVAEYQKLITQNPIFLERVEGIGTIRAEEALNWGLSGPMLRASGIEWDLRKIDQYE 240

[Close]
BLAST of ClCG10G006000 vs. Swiss-Prot
Match: NDHH_PELHO (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Pelargonium hortorum GN=ndhH PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 5.9e-98
Identity = 195/322 (60.56%), Postives = 210/322 (65.22%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           M  PATR+DLMIVNMGPHHPSMH            DVIDCEP+LGYLHRGMEKI ENRTI
Sbjct: 1   MTIPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPVLGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTE I VN PEQLGNIQVPKRA YIR IMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEVITVNAPEQLGNIQVPKRAGYIRTIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATE--------RVEGV----------------- 189
           FMADIGAQTPFFYIFREREL+YDLFE AT         R+ GV                 
Sbjct: 121 FMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCN 180

Query: 190 ----GIISGEEVINWG----------------------LSRPMLRASRMPWDLRKVDHYE 249
               G+   E++I                         LS PMLRAS M WDLRK+D+ E
Sbjct: 181 YFLTGLAEYEKLITRNPIFLERVEGIGIIGKEEAISWGLSGPMLRASGMQWDLRKIDNSE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CY +FDWEVQ              + EM ES+K+IQQALEGIPGGPYENLEIR FDR R 
Sbjct: 241 CYKKFDWEVQWQKEGDSLARYLVRIGEMRESIKMIQQALEGIPGGPYENLEIRCFDRERY 300

[Close]
BLAST of ClCG10G006000 vs. Swiss-Prot
Match: NDHH_CUCSA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus GN=ndhH PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.8e-94
Identity = 195/315 (61.90%), Postives = 205/315 (65.08%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MNGPATR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNGPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRV----------------- 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRV                 
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 -------------------IMLELSRIASHMLWLGPF--MADIGAQTPFFYIFRERELV- 189
                              ++ +L   A+ M  +  F  +  + A  P  +I +  +   
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNFFRIGGVAADLPHGWIDKCLDFCD 180

Query: 190 YDLFEVAT------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
           Y L  VA             ERVEGVGIISGEEVINWGLS PMLRAS +PWDLRKVD YE
Sbjct: 181 YFLTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPMLRASGIPWDLRKVDRYE 240

[Close]
BLAST of ClCG10G006000 vs. Swiss-Prot
Match: NDHH_CARPA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya GN=ndhH PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 3.3e-88
Identity = 182/322 (56.52%), Postives = 200/322 (62.11%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PAT +D MIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPATGKDFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRV----------------- 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRV                 
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 -------------------IMLELSRIASHMLWLGPF--MADIGAQTPFFYIFR------ 189
                              ++ +L   A+ M  +  +  +  I A  P  +I +      
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGIAADLPHGWIDKCLDFCD 180

Query: 190 -------ERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 249
                  E + +     +  ERVEGVGII GEE INWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWEVQ              ++EMTES+KIIQQALEGIPGGPYENLEIR FDR + 
Sbjct: 241 CYDEFDWEVQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRKKD 300

[Close]
BLAST of ClCG10G006000 vs. Swiss-Prot
Match: NDHH_GOSHI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium hirsutum GN=ndhH PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-87
Identity = 176/322 (54.66%), Postives = 201/322 (62.42%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN  AT +DLMIVNMGPHHPSMH            DV+DCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNLSATEKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRV----------------- 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRV                 
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 -------------------IMLELSRIASHMLWLGPF--MADIGAQTPFFYIFR------ 189
                              ++ +L   A+ M  +  +  +  + A  P+ ++ +      
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWLDKCLDFCD 180

Query: 190 -------ERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 249
                  E + +     +  ERVEG+G+I GEE INWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGIVEYQKLITRNPIFLERVEGIGVIGGEEAINWGLSGPMLRASGIKWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWE+Q              ++EMTES+KIIQQALEGIPGGPYENLEIR FDR R 
Sbjct: 241 CYDEFDWEIQWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERD 300

[Close]
BLAST of ClCG10G006000 vs. TrEMBL
Match: W1NR53_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00456p00012010 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 6.1e-118
Identity = 216/271 (79.70%), Postives = 224/271 (82.66%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PATR+DLMIVNMGP HPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPATRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPE LGNIQVPKRASYIR IMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPW 189
           FMADIGAQTPFFYIFRERELVYDLFE ATERVEGVGII  E+VINWGLS PMLRAS + W
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATERVEGVGIIGREDVINWGLSGPMLRASGIQW 180

Query: 190 DLRKVDHYECYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLE 249
           DLRKVDHYECYDEFDWEVQ              + EMTES+KIIQQALEGIPGGPYENLE
Sbjct: 181 DLRKVDHYECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE 240

Query: 250 IRSFDRGRSPEWNDFDYRFISKKPPLLPQIP 255
           IR  DR R PEWNDFDYRFISKKP    ++P
Sbjct: 241 IRDVDRERKPEWNDFDYRFISKKPSPTFELP 271

[Close]
BLAST of ClCG10G006000 vs. TrEMBL
Match: M7ZI22_TRIUA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Triticum urartu GN=TRIUR3_02235 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.9e-107
Identity = 195/272 (71.69%), Postives = 218/272 (80.15%), Query Frame = 1 

Query: 2   ERLIEEKLMNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGME 61
           ++LI  K M+ P TR+DLMIVNMGP HPSMH            DVIDCEPILGYLHRGME
Sbjct: 120 KKLIGRKDMSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGME 179

Query: 62  KIVENRTIIQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIA 121
           KI ENRTIIQYLPYVTRWDYLATMFTEAI VN PE L NIQ+P+RASYIRVIMLELSRIA
Sbjct: 180 KIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIA 239

Query: 122 SHMLWLGPFMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPM 181
           SH+LWLGPFMAD+GAQTPFFYIFREREL+YDLFE ATERVEGVG ISGEE +NWGLS PM
Sbjct: 240 SHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATERVEGVGFISGEEAVNWGLSGPM 299

Query: 182 LRASRMPWDLRKVDHYECYDEFDWEVQ--------------LAEMTESVKIIQQALEGIP 241
           LRAS + WDLRKVD YE Y++FDW+VQ              + EM ES+KIIQQA+E IP
Sbjct: 300 LRASGIQWDLRKVDPYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIP 359

Query: 242 GGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 248
           GGPYENLE+R F +  + EWNDF+Y+F+ KKP
Sbjct: 360 GGPYENLEVRRFKKENNSEWNDFEYKFLGKKP 391

[Close]
BLAST of ClCG10G006000 vs. TrEMBL
Match: E3W0Y2_9ROSI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Castanea mollissima GN=ndhH PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.0e-104
Identity = 207/322 (64.29%), Postives = 223/322 (69.25%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN P TR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPVTRKDLMIVNMGPHHPSMHGVLRLVVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPE+LGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPERLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATE--------RVEGV----------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT         R+ GV                 
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKGLDFCD 180

Query: 190 ----GIISGEEVI----------------------NWGLSRPMLRASRMPWDLRKVDHYE 249
               G+   +++I                      NWGLS PMLRAS + WDLRK+DHYE
Sbjct: 181 YFLTGVTEYQKLITRNPIFLERVEGVGIIGRDEVINWGLSGPMLRASGIQWDLRKIDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWEVQ              + EM ES+KIIQQALEGIPGGPYENLEIR FDR R 
Sbjct: 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMAESIKIIQQALEGIPGGPYENLEIRYFDRKRY 300

[Close]
BLAST of ClCG10G006000 vs. TrEMBL
Match: W9R030_9ROSA (NAD(P)H-quinone oxidoreductase subunit H OS=Morus notabilis GN=L484_016847 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.0e-104
Identity = 198/271 (73.06%), Postives = 208/271 (76.75%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PA R+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPAPRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI +NGPE LGNIQVPKRASYIR IMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITINGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPW 189
           F+ADIGAQTPFFYIFRERELVYDLFE AT                     PMLRAS + W
Sbjct: 121 FLADIGAQTPFFYIFRERELVYDLFEAAT--------------------GPMLRASGIQW 180

Query: 190 DLRKVDHYECYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLE 249
           DLRKVDHYECYDEFDWEVQ              + EMTES+KIIQQALEGIPGGPYENLE
Sbjct: 181 DLRKVDHYECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE 240

Query: 250 IRSFDRGRSPEWNDFDYRFISKKPPLLPQIP 255
           IR FDR R+PEWNDFDYRFISKKP    ++P
Sbjct: 241 IRYFDRERNPEWNDFDYRFISKKPSPTFELP 251

[Close]
BLAST of ClCG10G006000 vs. TrEMBL
Match: A0A0S2MA55_9ROSI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Juglans regia GN=ndhH PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.7e-104
Identity = 205/322 (63.66%), Postives = 224/322 (69.57%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PATR+DLMIVNMGPHHPSMH            +VIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPATRKDLMIVNMGPHHPSMHGVLRLIVTLDSENVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQ+PKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQIPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATE--------RVEGV----------------- 189
           FMADIGAQTPFFYIFRERE +YDLFE AT         R+ GV                 
Sbjct: 121 FMADIGAQTPFFYIFREREFIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCN 180

Query: 190 ----GIISGEEVI----------------------NWGLSRPMLRASRMPWDLRKVDHYE 249
               G+   +++I                      NWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGVTEYQKLITRNPIFLERVEGVGIIGRDEVINWGLSGPMLRASGIQWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDE DWEVQ              + EMTES+KIIQQALEGIPGGPYENLE+R FDR R 
Sbjct: 241 CYDELDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLELRYFDRERY 300

[Close]
BLAST of ClCG10G006000 vs. TAIR10
Match: ATCG01110.1 (ATCG01110.1 NAD(P)H dehydrogenase subunit H)

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-86
Identity = 177/315 (56.19%), Postives = 195/315 (61.90%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           M  P T +DLMIVNMGPHHPSMH            DV+DCEPILGYLHRGMEKI ENR I
Sbjct: 1   MKRPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRV----------------- 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQVPKRASYIRV                 
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 -------------------IMLELSRIASHMLWLGPF--MADIGAQTPFFYIFRERELV- 189
                               + +L   A+ M  +  F  +  I A  P+ +I +  +   
Sbjct: 121 FMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCD 180

Query: 190 YDLFEVAT------------ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYE 248
           Y L EV              ERVEGVGII GEE INWGLS PMLRAS +PWDLRK+D YE
Sbjct: 181 YFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYE 240

[Close]
BLAST of ClCG10G006000 vs. TAIR10
Match: ATMG00510.1 (ATMG00510.1 NADH dehydrogenase subunit 7)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-21
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 23  NMGPHHPSM-----------HDVID-CEPILGYLHRGMEKIVENRTIIQYLPYVTRWDYL 82
           N GP HP+             +V++  EP +G LHRG EK++E +T +Q LPY  R DY+
Sbjct: 14  NFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYV 73

Query: 83  ATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGPFMADIGAQTPFFY 142
           + M  E    +  E+L N +VP RA YIRV+  E++RI++H L L     D+GA TPF +
Sbjct: 74  SMMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLW 133

Query: 143 IFRERELVYDLFE 144
            F ERE + + +E
Sbjct: 134 AFEEREKLLEFYE 146


HSP 2 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 24/85 (28.24%), Postives = 42/85 (49.41%), Query Frame = 1 

Query: 147 ERVEGVGIISGEEVINWGLSRPMLRASRMPWDLRKVDHYECYDEFDWEV----------- 206
           +R+  +G ++ ++  +WG S  MLR   + WD R+   Y+ +D+ D +V           
Sbjct: 201 QRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDR 260

Query: 207 ---QLAEMTESVKIIQQALEGIPGG 218
              ++ EM +S++II Q L  +P G
Sbjct: 261 YCIRIEEMRQSLRIIVQCLNQMPSG 285

[Close]
BLAST of ClCG10G006000 vs. NCBI nr
Match: gi|548835836|gb|ERM97465.1| (hypothetical protein AMTR_s00456p00012010 [Amborella trichopoda])

HSP 1 Score: 431.8 bits (1109), Expect = 8.8e-118
Identity = 216/271 (79.70%), Postives = 224/271 (82.66%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PATR+DLMIVNMGP HPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPATRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPE LGNIQVPKRASYIR IMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPW 189
           FMADIGAQTPFFYIFRERELVYDLFE ATERVEGVGII  E+VINWGLS PMLRAS + W
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATERVEGVGIIGREDVINWGLSGPMLRASGIQW 180

Query: 190 DLRKVDHYECYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLE 249
           DLRKVDHYECYDEFDWEVQ              + EMTES+KIIQQALEGIPGGPYENLE
Sbjct: 181 DLRKVDHYECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE 240

Query: 250 IRSFDRGRSPEWNDFDYRFISKKPPLLPQIP 255
           IR  DR R PEWNDFDYRFISKKP    ++P
Sbjct: 241 IRDVDRERKPEWNDFDYRFISKKPSPTFELP 271

[Close]
BLAST of ClCG10G006000 vs. NCBI nr
Match: gi|474239245|gb|EMS59732.1| (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Triticum urartu])

HSP 1 Score: 395.6 bits (1015), Expect = 7.0e-107
Identity = 195/272 (71.69%), Postives = 218/272 (80.15%), Query Frame = 1 

Query: 2   ERLIEEKLMNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGME 61
           ++LI  K M+ P TR+DLMIVNMGP HPSMH            DVIDCEPILGYLHRGME
Sbjct: 120 KKLIGRKDMSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGME 179

Query: 62  KIVENRTIIQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIA 121
           KI ENRTIIQYLPYVTRWDYLATMFTEAI VN PE L NIQ+P+RASYIRVIMLELSRIA
Sbjct: 180 KIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIA 239

Query: 122 SHMLWLGPFMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPM 181
           SH+LWLGPFMAD+GAQTPFFYIFREREL+YDLFE ATERVEGVG ISGEE +NWGLS PM
Sbjct: 240 SHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATERVEGVGFISGEEAVNWGLSGPM 299

Query: 182 LRASRMPWDLRKVDHYECYDEFDWEVQ--------------LAEMTESVKIIQQALEGIP 241
           LRAS + WDLRKVD YE Y++FDW+VQ              + EM ES+KIIQQA+E IP
Sbjct: 300 LRASGIQWDLRKVDPYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIP 359

Query: 242 GGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 248
           GGPYENLE+R F +  + EWNDF+Y+F+ KKP
Sbjct: 360 GGPYENLEVRRFKKENNSEWNDFEYKFLGKKP 391

[Close]
BLAST of ClCG10G006000 vs. NCBI nr
Match: gi|703067472|ref|XP_010087976.1| (NAD(P)H-quinone oxidoreductase subunit H [Morus notabilis])

HSP 1 Score: 387.9 bits (995), Expect = 1.5e-104
Identity = 198/271 (73.06%), Postives = 208/271 (76.75%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PA R+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPAPRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI +NGPE LGNIQVPKRASYIR IMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITINGPELLGNIQVPKRASYIRAIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATERVEGVGIISGEEVINWGLSRPMLRASRMPW 189
           F+ADIGAQTPFFYIFRERELVYDLFE AT                     PMLRAS + W
Sbjct: 121 FLADIGAQTPFFYIFRERELVYDLFEAAT--------------------GPMLRASGIQW 180

Query: 190 DLRKVDHYECYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLE 249
           DLRKVDHYECYDEFDWEVQ              + EMTES+KIIQQALEGIPGGPYENLE
Sbjct: 181 DLRKVDHYECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE 240

Query: 250 IRSFDRGRSPEWNDFDYRFISKKPPLLPQIP 255
           IR FDR R+PEWNDFDYRFISKKP    ++P
Sbjct: 241 IRYFDRERNPEWNDFDYRFISKKPSPTFELP 251

[Close]
BLAST of ClCG10G006000 vs. NCBI nr
Match: gi|313184047|ref|YP_004021204.1| (NADH-plastoquinone oxidoreductase subunit 7 [Castanea mollissima])

HSP 1 Score: 387.9 bits (995), Expect = 1.5e-104
Identity = 207/322 (64.29%), Postives = 223/322 (69.25%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN P TR+DLMIVNMGPHHPSMH            DVIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPVTRKDLMIVNMGPHHPSMHGVLRLVVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPE+LGNIQVPKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPERLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATE--------RVEGV----------------- 189
           FMADIGAQTPFFYIFRERELVYDLFE AT         R+ GV                 
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKGLDFCD 180

Query: 190 ----GIISGEEVI----------------------NWGLSRPMLRASRMPWDLRKVDHYE 249
               G+   +++I                      NWGLS PMLRAS + WDLRK+DHYE
Sbjct: 181 YFLTGVTEYQKLITRNPIFLERVEGVGIIGRDEVINWGLSGPMLRASGIQWDLRKIDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDEFDWEVQ              + EM ES+KIIQQALEGIPGGPYENLEIR FDR R 
Sbjct: 241 CYDEFDWEVQWQKEGDSLARYLVRIGEMAESIKIIQQALEGIPGGPYENLEIRYFDRKRY 300

[Close]
BLAST of ClCG10G006000 vs. NCBI nr
Match: gi|959125645|ref|YP_009186224.1| (NADH dehydrogenase subunit 7 (chloroplast) [Juglans regia])

HSP 1 Score: 387.1 bits (993), Expect = 2.5e-104
Identity = 205/322 (63.66%), Postives = 224/322 (69.57%), Query Frame = 1 

Query: 10  MNGPATRQDLMIVNMGPHHPSMH------------DVIDCEPILGYLHRGMEKIVENRTI 69
           MN PATR+DLMIVNMGPHHPSMH            +VIDCEPILGYLHRGMEKI ENRTI
Sbjct: 1   MNIPATRKDLMIVNMGPHHPSMHGVLRLIVTLDSENVIDCEPILGYLHRGMEKIAENRTI 60

Query: 70  IQYLPYVTRWDYLATMFTEAIAVNGPEQLGNIQVPKRASYIRVIMLELSRIASHMLWLGP 129
           IQYLPYVTRWDYLATMFTEAI VNGPEQLGNIQ+PKRASYIRVIMLELSRIASH+LWLGP
Sbjct: 61  IQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQIPKRASYIRVIMLELSRIASHLLWLGP 120

Query: 130 FMADIGAQTPFFYIFRERELVYDLFEVATE--------RVEGV----------------- 189
           FMADIGAQTPFFYIFRERE +YDLFE AT         R+ GV                 
Sbjct: 121 FMADIGAQTPFFYIFREREFIYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCN 180

Query: 190 ----GIISGEEVI----------------------NWGLSRPMLRASRMPWDLRKVDHYE 249
               G+   +++I                      NWGLS PMLRAS + WDLRKVDHYE
Sbjct: 181 YFLTGVTEYQKLITRNPIFLERVEGVGIIGRDEVINWGLSGPMLRASGIQWDLRKVDHYE 240

Query: 250 CYDEFDWEVQ--------------LAEMTESVKIIQQALEGIPGGPYENLEIRSFDRGRS 255
           CYDE DWEVQ              + EMTES+KIIQQALEGIPGGPYENLE+R FDR R 
Sbjct: 241 CYDELDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLELRYFDRERY 300

The following BLAST results are available for this feature:
BLAST of ClCG10G006000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDHH_IPOPU8.8e-10262.74NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Ipomoea purpurea GN=n... [more]
NDHH_PELHO5.9e-9860.56NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Pelargonium hortorum ... [more]
NDHH_CUCSA6.8e-9461.90NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus GN=nd... [more]
NDHH_CARPA3.3e-8856.52NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya GN=ndhH... [more]
NDHH_GOSHI1.6e-8754.66NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium hirsutum GN... [more]
BLAST of ClCG10G006000 vs. TrEMBL
Match NameE-valueIdentityDescription
W1NR53_AMBTC6.1e-11879.70Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00456p00012010 PE=4 SV=... [more]
M7ZI22_TRIUA4.9e-10771.69NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Triticum urartu GN=TR... [more]
E3W0Y2_9ROSI1.0e-10464.29NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Castanea mollissima G... [more]
W9R030_9ROSA1.0e-10473.06NAD(P)H-quinone oxidoreductase subunit H OS=Morus notabilis GN=L484_016847 PE=3 ... [more]
A0A0S2MA55_9ROSI1.7e-10463.66NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Juglans regia GN=ndhH... [more]
BLAST of ClCG10G006000 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01110.11.9e-8656.19ATCG01110.1 NAD(P)H dehydrogenase subunit H[more]
ATMG00510.13.7e-2140.60ATMG00510.1 NADH dehydrogenase subunit 7[more]
BLAST of ClCG10G006000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548835836|gb|ERM97465.1|8.8e-11879.70hypothetical protein AMTR_s00456p00012010 [Amborella trichopoda][more]
gi|474239245|gb|EMS59732.1|7.0e-10771.69NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Triticum urartu][more]
gi|703067472|ref|XP_010087976.1|1.5e-10473.06NAD(P)H-quinone oxidoreductase subunit H [Morus notabilis][more]
gi|313184047|ref|YP_004021204.1|1.5e-10464.29NADH-plastoquinone oxidoreductase subunit 7 [Castanea mollissima][more]
gi|959125645|ref|YP_009186224.1|2.5e-10463.66NADH dehydrogenase subunit 7 (chloroplast) [Juglans regia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001135NADH_Q_OxRdtase_suD
IPR014029NADH_UbQ_OxRdtase_49kDa_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0048038quinone binding
GO:0051287NAD binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0051287 NAD binding
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function GO:0048038 quinone binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G006000.1ClCG10G006000.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001135NADH-quinone oxidoreductase, subunit DPFAMPF00346Complex1_49kDacoord: 144..221
score: 1.6
IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved sitePROSITEPS00535COMPLEX1_49Kcoord: 44..55
scor
NoneNo IPR availablePANTHERPTHR11993NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNITcoord: 1..247
score: 5.1E
NoneNo IPR availablePANTHERPTHR11993:SF27NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTICcoord: 1..247
score: 5.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG10G006000Cla97C10G190140Watermelon (97103) v2wcgwmbB038
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G006000Cucurbita pepo (Zucchini)cpewcgB001
ClCG10G006000Cucurbita pepo (Zucchini)cpewcgB349
ClCG10G006000Bottle gourd (USVL1VR-Ls)lsiwcgB318
ClCG10G006000Cucumber (Gy14) v2cgybwcgB174
ClCG10G006000Melon (DHL92) v3.6.1medwcgB402
ClCG10G006000Silver-seed gourdcarwcgB0641
ClCG10G006000Silver-seed gourdcarwcgB0766
ClCG10G006000Cucumber (Chinese Long) v3cucwcgB194
ClCG10G006000Wax gourdwcgwgoB080
ClCG10G006000Cucumber (Gy14) v1cgywcgB049
ClCG10G006000Cucurbita maxima (Rimu)cmawcgB283
ClCG10G006000Cucurbita maxima (Rimu)cmawcgB614
ClCG10G006000Cucurbita moschata (Rifu)cmowcgB274
ClCG10G006000Cucurbita moschata (Rifu)cmowcgB615
ClCG10G006000Wild cucumber (PI 183967)cpiwcgB190
ClCG10G006000Cucumber (Chinese Long) v2cuwcgB189
ClCG10G006000Melon (DHL92) v3.5.1mewcgB416
ClCG10G006000Watermelon (97103) v1wcgwmB052