ClCG10G001490 (gene) Watermelon (Charleston Gray)

NameClCG10G001490
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-binding protein, putative
LocationCG_Chr10 : 1523240 .. 1526087 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGGAATACCTAAAAATAAAATATCCATCGCCTTATCCATATTCTTCGCCCTCGAAATCGAAACTATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCGCGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGGTTCTTCTTCTTCTTTTGTTCTTTCTTGTTTTGTGCTAATAATGTTTATGTATTCTGATGGATTTGTGTTGGAATCTGTGTATGTACTTTTATAGATTATAAAGCAGAAAAATGGAAGGAGCAGAGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATATGACTCTCAAGTAGGTTTTCTTCAACCTATTTCTGCTCATTTTCGTTTGCTTATTTGCCCAAATGAATTCTTATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTCCCAAATTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACTTGTATTCTACCAATAACTTGTTTGGTTTGGTTCTGAAATTGTGCAGTTCAATTTCAATATCACTTTTGGTATATATAATTATCTTTAAAATCTACTTAGAGAATCCTCGAGAGTTTTTTCTTTCTTGATATTTGTAAGTTTTCGGGTTGAGATTGAAGTCACTGAAATTTCAACTCATTCCTTTTATTTTTTCAACATGTTTATGATACTAAACCACCTTACAATGGTTCAAAAGCTCTTTTCATCATATAGTTTAATTAATCAAAACTAACTTGTCCTTTTTTTCTCTAGGTTTAGTGATTAAATTTTTGTATGGATACTCAGACTCAAATTGTAAAAATTATAAAAATTAACTTTTTGTTTATGTTGCAAAGTCCTGGCCAACACTAAAATCCCATTTGCCATCAAGGTTCTCACCTAACATGAATGGATGAGACCCCAAACGTGAGTTCACATCTAAAAAAAAGTTATAAAAATCGCAAAATTTTAATAATGGCGACAGTTATATTTTTACAAAAAAGATCACATTCAAGTCTCTTCAGTTCGCAATGGATGTGAATGCTTAATGGTAGTTGGTGTTTTGTGATGTAAGCAAAAGATTAATTTTCATTGTTTTTAGAATTTTGGTCATTTGACATCACCGCAACTAAATTTGAATCATCCATGAAAAAAACTCTTTAGTGATATACAAATGTTAGGGGGTTAAATAGTTGTCCCATAGAATCAATTCCACTGCATACAAGCGAGCCAAAAGACTCGTATAGTTACGTATGGGCTTATTAGTTAAAGCTCCAATCCTTTTATCAGACATTAAATATTTTAAAAGATATCTCTATTCTAATTGTCATATAGTATCAGATTCCATTCAAATTTTTGCCATTGAGGAAGTTAAGACATTTCCTAATGACTCAAGGTATCAGTCATTTTCTTTTATATTGGTTCTAAACATACATAACTGCTGCCTATTATGACATATCTAGGTCCTGTTCGTGGTAAAATATATCATGTTAATATGTTCCATGCAGGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAGGCTGAAACTGCACTTTCTTCGTTGGAGGGGAAGGTAATTTACTTCCTGAGATCCTGTTAATTGATGAAGTTTTGCATAACCGAGAATTTATTTGGAATCACTTTCCAAATGCTTAAAAACACCATTTTAAGTACTTGAAAAGTTATTCCAAACAGACTTTCAATGTTGTTACTTACGCAAATGGTTCATGTTTGAATCAACACTCACAAATAAGAAAAAACGAAAACCTGAACTAATGCTCCTTCTTGAGTATCATTTGTTCAAAACCTGAAAAATGACCAAGTGCCATGATGCATTTTACTTCTATTCCATTCCTTCCTTGCATATTTGAAATGCTTTACTCTCTCCCTCCACAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAACCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAG

mRNA sequence

AAAAAGGAATACCTAAAAATAAAATATCCATCGCCTTATCCATATTCTTCGCCCTCGAAATCGAAACTATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCGCGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGAGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATATGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAACCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAG

Coding sequence (CDS)

ATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCGCGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGAGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATATGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAACCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAG

Protein sequence

MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFELMGRPLRLKFSERNVNEPETPKEDVSESQSEES
BLAST of ClCG10G001490 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-25
Identity = 78/225 (34.67%), Postives = 120/225 (53.33%), Query Frame = 1

Query: 68  SAVQEVSLEEASEQNEDVN-QKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQK-N 127
           SA +E  +EE  E+ E  + +  +LY+ NLP+S +   + E+F + GTV +VEI+  +  
Sbjct: 92  SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVT 151

Query: 128 GRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAK----RLKKPPPPKPPGPPPG 187
            RSRGFAFVTM S +EA+ AI  +D  ++ GR +KV F +      ++    K      G
Sbjct: 152 DRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQG 211

Query: 188 --ETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF--------- 247
             ++ +KLYV+NL+W + S  LR+ F++    ++A+V++D  SGRS G+GF         
Sbjct: 212 FVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAM 271

Query: 248 ----------ELMGRPLRLKFSERNVNEPETPKEDVS-ESQSEES 265
                     EL GRPLRL  + +       P  + S E+ S+ S
Sbjct: 272 NSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPENDSDNS 316

BLAST of ClCG10G001490 vs. Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-22
Identity = 87/278 (31.29%), Postives = 132/278 (47.48%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIK-LRISFSSP-LLSLNPTTPISPLSLN- 60
           MAT    I +   + ++ S S   F  L + +K + +S S P LLSLN  T   P  ++ 
Sbjct: 1   MATNGCLISLPPFFTTTKSISSYPF--LSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSV 60

Query: 61  ----------PSRNRGGRLCSAVQEVS-LEEASEQNEDVNQKKKLYIFNLPWSFSVVDIK 120
                       + +GG   S V E    EE  E +ED     KL++ NLP+      + 
Sbjct: 61  LSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDA----KLFVGNLPYDIDSEGLA 120

Query: 121 ELFGQCGTVTDVEII-KQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAK 180
           +LF Q G V   E+I  ++  RSRGF FVTM++ +EA  A+  Y   +++GR++ V  A 
Sbjct: 121 QLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA 180

Query: 181 RLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRS 240
                P   P    P     ++YV N+ W +  + L + FSE+   V+ARVVFD  SGRS
Sbjct: 181 PRGSRPERAPRTFQP---TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRS 240

Query: 241 AGYGFELMGRPLRLKFSERNVNEPETPKEDVSESQSEE 264
            G+GF  M     +  +  N++        +  + +EE
Sbjct: 241 RGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269

BLAST of ClCG10G001490 vs. Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-22
Identity = 63/199 (31.66%), Postives = 111/199 (55.78%), Query Frame = 1

Query: 72  EVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRG 131
           EV  +E  E+ ++  +  KL++ NLP+      +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 132 FAFVTMASPDEAQAAIHKYDSQEISGRVIKV-EFAKRLKKPPPPKPPGPPPGETVNKLYV 191
           F FVTM++ +EA+ A+  Y+  +++GR++ V + A+R ++P  P    P   E   ++YV
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYV 238

Query: 192 SNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFELMGRPLRLKFSERNVN-- 251
            N+ W +  + L + FSE+   V+ARVV+D  +GRS G+GF  M     +  +  N++  
Sbjct: 239 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQ 298

Query: 252 --EPETPKEDVSESQSEES 265
             +  T + +V+E +S  +
Sbjct: 299 SLDGRTIRVNVAEDRSRRN 313

BLAST of ClCG10G001490 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 73/226 (32.30%), Postives = 112/226 (49.56%), Query Frame = 1

Query: 16  SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEVSL 75
           +S ++S   F+  PS++ L +S SS   S      ++    +            +++V  
Sbjct: 24  TSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQ-----------IEDVED 83

Query: 76  -EEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQK-NGRSRGFAF 135
            ++  E+  + +   K+++ NLP+S     + ELF + G V  VE+I  K  GRSRGF F
Sbjct: 84  GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 143

Query: 136 VTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPP---------GPPPGETV 195
           VTM+S +E +AA  +++  E+ GR ++V        PPP K           G    ++ 
Sbjct: 144 VTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSS 203

Query: 196 NKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF 231
           N++YV NLAW V    L   FSE    V A+VV+D  SGRS G+GF
Sbjct: 204 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGF 233


HSP 2 Score: 58.9 bits (141), Expect = 9.5e-08
Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 1

Query: 74  SLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFA 133
           S    S      +   ++Y+ NL W      ++ LF + G V D +++  ++ GRSRGF 
Sbjct: 173 SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFG 232

Query: 134 FVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPP 172
           FVT +S +E   AI   D  +++GR I+V  A+   +PP
Sbjct: 233 FVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE--ARPP 269

BLAST of ClCG10G001490 vs. Swiss-Prot
Match: CP29B_ARATH (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-21
Identity = 80/251 (31.87%), Postives = 112/251 (44.62%), Query Frame = 1

Query: 16  SSSSSSKLCFN--KLPSAIK--LRISFSSPLLSLNPTTPISPLSL----NPSRNRGGRLC 75
           S+SS +   FN   LP  +     +S  SP LS    +     S+    N   +R  R  
Sbjct: 4   SASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARNV 63

Query: 76  SAVQEVSLEE------ASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEII 135
           +   E  +EE      A  + +  +   KL++ NLP++     + +LF   G V  VE+I
Sbjct: 64  AITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVI 123

Query: 136 KQK-NGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPP---- 195
             K  GRSRGF FVTM+S  E +AA  +++  E+ GR ++V        PPPPK      
Sbjct: 124 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG-----PPPPKREDGFS 183

Query: 196 -----------------GPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFD 231
                            G     + N++YV NL+W V    L   FSE    V ARV++D
Sbjct: 184 RGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 243


HSP 2 Score: 56.2 bits (134), Expect = 6.2e-07
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1

Query: 90  KLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAAIHK 149
           ++Y+ NL W    + ++ LF + G V +  +I  ++ GRS+GF FVT  S  E Q AI  
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query: 150 YDSQEISGRVIKVEFAKRLKKPP 172
            D  ++ GR I+V  A+   +PP
Sbjct: 265 LDGADLDGRQIRVSEAE--ARPP 285


HSP 3 Score: 42.7 bits (99), Expect = 7.1e-03
Identity = 29/89 (32.58%), Postives = 38/89 (42.70%), Query Frame = 1

Query: 186 KLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF--------------- 245
           KL+V NL + V S+ L + F    N     V++D  +GRS G+GF               
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 246 ----ELMGRPLRLKFSERNVNEPETPKED 256
               EL GRPLR+     N   P   +ED
Sbjct: 152 FNGYELDGRPLRV-----NAGPPPPKRED 175

BLAST of ClCG10G001490 vs. TrEMBL
Match: A0A0A0L1U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.1e-126
Identity = 238/288 (82.64%), Postives = 252/288 (87.50%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLN 60
           M T+ES +PIIS YISSSSSS   KLCFNKLPS IKLRISFSSPLLSLNPTTPISP S N
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  PSRNRGG--RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
            SRNRGG  RLCSA+QEV+LEEASE+N+DVNQK+KLYIFNLPWS SVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF----- 240
           PGPPPGETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGF     
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 --------------ELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 265
                         ELMGRPLRLKFSERNVNE ETPKED+ ESQ EES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

BLAST of ClCG10G001490 vs. TrEMBL
Match: A0A067K0D0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19129 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.5e-72
Identity = 155/290 (53.45%), Postives = 196/290 (67.59%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLS--LNPTTPISPLSLN- 60
           MA  E+  P+   +++ +SSSK   +  PS   L I+F +P  +  +    P+ PL+ + 
Sbjct: 1   MAAAEAVFPL---FLTHASSSKFFSSSKPSTALLSINFHNPCFTPLVCRNFPLFPLTNSH 60

Query: 61  -PSRNRGGRLCSAVQEVSLE-EASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
             +R    + CS  QE++ E E  +  E+  QK+KLY+ NLPWS SV DIK LFGQCGTV
Sbjct: 61  LTTRKLSFKRCSTTQELTAETELQQTQEETVQKRKLYVVNLPWSLSVADIKILFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           TDVE+IKQKNGRSRGFAFVTMAS +EAQA + K+DS EISGR+I+VE+AKR KKP PP P
Sbjct: 121 TDVEVIKQKNGRSRGFAFVTMASGEEAQAVVDKFDSHEISGRIIRVEYAKRFKKPSPPPP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFS-ENFNPVAARVVFDSPSGRSAGYGF---- 240
           PG PP ET +KLYVSN+ WKVR++NLREFFS  NF PV++RVVFDSP+GRS+GYGF    
Sbjct: 181 PGAPPKETRHKLYVSNIGWKVRANNLREFFSANNFTPVSSRVVFDSPTGRSSGYGFVSFV 240

Query: 241 ---------------ELMGRPLRLKFSERNVNEPETPKEDVS--ESQSEE 264
                          ELMGRPLRLKFSE   +E  + K+D    E+Q EE
Sbjct: 241 TREEAEAAISALDGKELMGRPLRLKFSENKPDESGSEKQDEENLEAQPEE 287

BLAST of ClCG10G001490 vs. TrEMBL
Match: A0A059CII5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02207 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 166/303 (54.79%), Postives = 200/303 (66.01%), Query Frame = 1

Query: 1   MATLESAIPIIS-QYISSSSSSKLCFNKLPSAIK-----LRISFSS------PLLSLNPT 60
           MATLE+A+ I S +  SSSSSS    ++ P+  K     L++ FS       P  SL   
Sbjct: 1   MATLETALSIFSGRSPSSSSSSSPLHSRSPARAKPPSGSLKLRFSPATPPPRPSSSLRGR 60

Query: 61  TPISPLSLNPSRNRGGRLCS----AVQEVSLE-EASEQNEDVNQKKKLYIFNLPWSFSVV 120
             +  L   P   R G+ C     AVQE++ E EA E+ ++ N KKKLY+ NLPWS SV 
Sbjct: 61  LLLRLLLRVPRDERAGKPCLGPCFAVQEMAAESEADEETQEQNIKKKLYVVNLPWSLSVQ 120

Query: 121 DIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEF 180
           DIK LFGQCGT  DVEIIKQK+GRSRGFAFVTM+S +EAQA + K+DS E+SGR+I+VEF
Sbjct: 121 DIKNLFGQCGTAKDVEIIKQKDGRSRGFAFVTMSSGEEAQAVVEKFDSFEVSGRIIRVEF 180

Query: 181 AKRLKKPPPPKPPGPPPG-ETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPS 240
           AKR ++PPPP PP  PP  ET +KLYVSNLAWK RS++LRE FSENFNPV++RVVF+SPS
Sbjct: 181 AKRFRRPPPPPPPNVPPAKETRHKLYVSNLAWKARSTHLRELFSENFNPVSSRVVFESPS 240

Query: 241 GRSAGYGF-------------------ELMGRPLRLKFSERNVNEPETPK--EDVSESQS 265
           GRSAGYGF                   ELMGRPLRLKFSERN  E E+    E  SE Q 
Sbjct: 241 GRSAGYGFVSFATREEAEAAISALDGKELMGRPLRLKFSERNPAESESGNEGEGTSEDQP 300

BLAST of ClCG10G001490 vs. TrEMBL
Match: W9QFE1_9ROSA (31 kDa ribonucleoprotein OS=Morus notabilis GN=L484_003209 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 162/300 (54.00%), Postives = 204/300 (68.00%), Query Frame = 1

Query: 1   MATLESAIPI-----ISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLS 60
           MA LE+ + +      S   SSSSSS L   KL S  + R + S  L S N  + +   +
Sbjct: 1   MAALEAVLSLRLCLLYSSSPSSSSSSSLSTTKL-SFPRTR-THSLKLHSANSCSFLQSST 60

Query: 61  LNPSRNRGGRLCSAVQE--VSLEEASEQN---EDVNQKKKLYIFNLPWSFSVVDIKELFG 120
            NP      RLC +VQE  ++++E +E+    ++ NQK+KLY+ NLPWS +VVDIK LFG
Sbjct: 61  RNPW---SFRLCFSVQEQEIAVQEKAEETHLEKENNQKRKLYVVNLPWSLTVVDIKSLFG 120

Query: 121 QCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKP 180
           QCGTVTDVEIIKQK+GR+RGFAFVTMA  +EAQA I +++ Q++SGR+IK+E AK+ KKP
Sbjct: 121 QCGTVTDVEIIKQKDGRNRGFAFVTMACGEEAQAVIDRFNLQDVSGRIIKIELAKQFKKP 180

Query: 181 PPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF 240
            PP+PPGP PGET +KLYVSN+ WKVRS++LR+F SENF PV+ARVVFD P GRSAGYGF
Sbjct: 181 SPPRPPGPQPGETTHKLYVSNIEWKVRSTHLRDFVSENFKPVSARVVFDGPKGRSAGYGF 240

Query: 241 -------------------ELMGRPLRLKFS-----ERNVNEPETPKED--VSESQSEES 265
                              ELMGRPLRLKFS     E+NV+E E  KE+  VSE Q+EES
Sbjct: 241 VSFATREEAEAAISSLDGKELMGRPLRLKFSEKNAGEKNVDETENQKEEETVSEGQTEES 295

BLAST of ClCG10G001490 vs. TrEMBL
Match: A9PK26_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.1e-70
Identity = 149/262 (56.87%), Postives = 186/262 (70.99%), Query Frame = 1

Query: 29  PSAIKLRISFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEVSLEEASEQNE--DVN 88
           P ++ L IS  +PL+S N   P    +   S++   +LCS VQEV++E   E+ E  + N
Sbjct: 32  PLSLNLHISNPTPLISHNFPQPSLTQNHPRSKSLCFQLCSTVQEVTMEITPEEEEIQEAN 91

Query: 89  QKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAI 148
            K+KL++ NLPWSFSVVDIK+LFGQCGTV+DVEIIKQKNGRSRGFAFVTM + +EAQAAI
Sbjct: 92  LKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAI 151

Query: 149 HKYDSQEISGRVIKVEFAKRLKKPPPPKPPGP----PPGETVNKLYVSNLAWKVRSSNLR 208
            K++S E+SGR+I+VEFAKRL++PP P+ PG     P GET +KLY+SNLAWKVR S+LR
Sbjct: 152 DKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAGETRHKLYISNLAWKVRGSHLR 211

Query: 209 EFFSENFNPVAARVVFDSPSGRSAGYGF-------------------ELMGRPLRLKFSE 264
           EFFS N NPV++RVVFD P+GRS+GYGF                   ELMGRP+RLKFSE
Sbjct: 212 EFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISAFSGKELMGRPIRLKFSE 271

BLAST of ClCG10G001490 vs. TAIR10
Match: AT2G35410.1 (AT2G35410.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-65
Identity = 142/292 (48.63%), Postives = 187/292 (64.04%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRI------SFSSPLLSLNPTTPISPL 60
           MA LE+++ I S   SSSSS    F+K  S++KL        S  SP+ SL   +  S  
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRR 60

Query: 61  SLNPSRNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGT 120
            ++   +   +  SA +E S EE +E+ ++ N K+KL++FNLPWS SV DI ELFGQCGT
Sbjct: 61  LVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGT 120

Query: 121 VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPK 180
           V +VEII+QK+G++RGFAFVTMAS +EAQAAI K+D+ ++SGR+I V FA+R KKP P  
Sbjct: 121 VNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKS 180

Query: 181 P---PGPPPGETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGRSAGYGF 240
           P   P P PG+T +KLYVSNLAWK RS++LRE F + +FNPV+ARVVF  P GRS+GYGF
Sbjct: 181 PNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGF 240

Query: 241 -------------------ELMGRPLRLKFSERNVNEPETPKEDVSESQSEE 264
                              E+MGRP+ LKFS R+ +E E      + + SE+
Sbjct: 241 VSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASED 292

BLAST of ClCG10G001490 vs. TAIR10
Match: AT4G09040.1 (AT4G09040.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-27
Identity = 91/288 (31.60%), Postives = 138/288 (47.92%), Query Frame = 1

Query: 8   IPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNP-SRNRGGRL 67
           +P IS  I    S++   N   +     +S S+P L         P S+   SRN     
Sbjct: 6   LPGISLQILGHKSNQKNPNPNVAFTNHSLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYF 65

Query: 68  CSAVQEVSLEEASEQN------EDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEI 127
            +  QE  LE +S  +      E+   K +L   N+PW+ +  DI+ LF + G+V D+E+
Sbjct: 66  STTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEM 125

Query: 128 IKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPP 187
              K  R+RG  F+ MASP+EA  A+   +S E  GR +KV++AK  KK        P P
Sbjct: 126 SMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSP 185

Query: 188 GETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGRSAGYGF--------- 247
             T N L+V+NLA++ R+ +L+EFF ++  N V+  V+F     RS+GYGF         
Sbjct: 186 VPTFN-LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 245

Query: 248 ----------ELMGRPLRL----KFSERNVNEPETPKEDVSESQSEES 265
                     + +GRP+RL    +F +    E   P E+ +E +  +S
Sbjct: 246 EAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQS 292

BLAST of ClCG10G001490 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 77/204 (37.75%), Postives = 103/204 (50.49%), Query Frame = 1

Query: 37  SFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEVSLEEASEQNED---------VNQ 96
           S +  LL  N +TP   L  + S +R  R+ S    V LEE  E+ +D            
Sbjct: 26  SSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEE--EEKDDGASAVLDPPAAV 85

Query: 97  KKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAAI 156
             KLY  NLP++     + ++         VE++  ++ G+SRGFAFVTM++ ++    I
Sbjct: 86  NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 145

Query: 157 HKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFS 216
              D  E  GR +KV FA    KP P K P  P  ET +KL+V NL+W V S +L   F 
Sbjct: 146 DNLDGTEYLGRALKVNFAD---KPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGAFR 205

Query: 217 ENFNPVAARVVFDSPSGRSAGYGF 231
           E  + V ARVVFD  +GRS GYGF
Sbjct: 206 ECGDVVGARVVFDGDTGRSRGYGF 222


HSP 2 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1

Query: 90  KLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAAIHK 149
           KL++ NL W+ +   +   F +CG V    ++   + GRSRG+ FV  +S  E + A+  
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237

Query: 150 YDSQEISGRVIKVEFAKRLK 169
            D  E+ GR I+V  A+  K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257

BLAST of ClCG10G001490 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 80/251 (31.87%), Postives = 112/251 (44.62%), Query Frame = 1

Query: 16  SSSSSSKLCFN--KLPSAIK--LRISFSSPLLSLNPTTPISPLSL----NPSRNRGGRLC 75
           S+SS +   FN   LP  +     +S  SP LS    +     S+    N   +R  R  
Sbjct: 4   SASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARNV 63

Query: 76  SAVQEVSLEE------ASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEII 135
           +   E  +EE      A  + +  +   KL++ NLP++     + +LF   G V  VE+I
Sbjct: 64  AITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVI 123

Query: 136 KQK-NGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPP---- 195
             K  GRSRGF FVTM+S  E +AA  +++  E+ GR ++V        PPPPK      
Sbjct: 124 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG-----PPPPKREDGFS 183

Query: 196 -----------------GPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFD 231
                            G     + N++YV NL+W V    L   FSE    V ARV++D
Sbjct: 184 RGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 243


HSP 2 Score: 56.2 bits (134), Expect = 3.5e-08
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1

Query: 90  KLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAAIHK 149
           ++Y+ NL W    + ++ LF + G V +  +I  ++ GRS+GF FVT  S  E Q AI  
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query: 150 YDSQEISGRVIKVEFAKRLKKPP 172
            D  ++ GR I+V  A+   +PP
Sbjct: 265 LDGADLDGRQIRVSEAE--ARPP 285


HSP 3 Score: 42.7 bits (99), Expect = 4.0e-04
Identity = 29/89 (32.58%), Postives = 38/89 (42.70%), Query Frame = 1

Query: 186 KLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF--------------- 245
           KL+V NL + V S+ L + F    N     V++D  +GRS G+GF               
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 246 ----ELMGRPLRLKFSERNVNEPETPKED 256
               EL GRPLR+     N   P   +ED
Sbjct: 152 FNGYELDGRPLRV-----NAGPPPPKRED 175

BLAST of ClCG10G001490 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 88/270 (32.59%), Postives = 122/270 (45.19%), Query Frame = 1

Query: 9   PIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPI--SPL-----SLNPSRN 68
           P IS  ISSS       + L   I L +SFS   LSL   T +  SP        +    
Sbjct: 27  PSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWAE 86

Query: 69  RGGRLCSAVQEV--SLE--------------------EASEQNEDVNQ------------ 128
            GG    AV+E   SLE                    E  E   DV++            
Sbjct: 87  EGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEP 146

Query: 129 --KKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEII-KQKNGRSRGFAFVTMASPDEAQA 188
             + KL++ NL +  +   +  LF Q GTV   E+I  ++  +SRGF FVTM+S DEA+ 
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206

Query: 189 AIHKYDSQEISGRVIKVEFAKRLKKPPPPKPP-GPPPGETVNKLYVSNLAWKVRSSNLRE 234
           A+ K++  +++GR++ V  A     P   +P   P   E   ++YV NL W V +  L +
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQ 266


HSP 2 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1

Query: 90  KLYIFNLPWSFSVVDIKELFGQCGTVTDVEII-KQKNGRSRGFAFVTMASPDEAQAAIHK 149
           ++Y+ NLPW      +++LF + G V +  ++  ++ GRSRGF FVTM+  DE   AI  
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304

Query: 150 YDSQEISGRVIKVEFAKRLKKPP 172
            D Q + GR I+V  A+  ++PP
Sbjct: 305 LDGQNLEGRAIRVNVAE--ERPP 325

BLAST of ClCG10G001490 vs. NCBI nr
Match: gi|659095603|ref|XP_008448669.1| (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 464.2 bits (1193), Expect = 1.6e-127
Identity = 239/285 (83.86%), Postives = 252/285 (88.42%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSR 60
           MATLESA+PIIS Y+SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNP TPISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NRGG--RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDV 120
           N GG  RLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+DV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKR K+PPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF-------- 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGF        
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 -----------ELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 265
                      ELMGRPLRLKFSER+VNE ETPKED+ ESQ EES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

BLAST of ClCG10G001490 vs. NCBI nr
Match: gi|778675028|ref|XP_011650340.1| (PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus])

HSP 1 Score: 459.9 bits (1182), Expect = 3.0e-126
Identity = 238/288 (82.64%), Postives = 252/288 (87.50%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLN 60
           M T+ES +PIIS YISSSSSS   KLCFNKLPS IKLRISFSSPLLSLNPTTPISP S N
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  PSRNRGG--RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
            SRNRGG  RLCSA+QEV+LEEASE+N+DVNQK+KLYIFNLPWS SVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF----- 240
           PGPPPGETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGF     
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 --------------ELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 265
                         ELMGRPLRLKFSERNVNE ETPKED+ ESQ EES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

BLAST of ClCG10G001490 vs. NCBI nr
Match: gi|1009157668|ref|XP_015896880.1| (PREDICTED: RNA-binding protein CP33, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82
Identity = 170/284 (59.86%), Postives = 202/284 (71.13%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTT-PISPLSLNPS 60
           MA LE+ + +   Y SSSSSS         ++K   S S+P LS N    P  P++ +PS
Sbjct: 1   MAALEATLSLCPVYSSSSSSSAKFPKPFLYSLKFHNSISAPPLSHNLLFHPSLPITNSPS 60

Query: 61  RNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVE 120
           R     LCSAVQE+  EE SE+ ++ NQKKKL++ NLPWS +VVDIK LFG+CGTV DVE
Sbjct: 61  RKLCFELCSAVQEIVTEEKSEKTQESNQKKKLFVVNLPWSLTVVDIKNLFGECGTVVDVE 120

Query: 121 IIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPP 180
           IIKQK GRSRGFAFVTMAS +EAQA I K+ SQE+SGR I++EFAKR KKP PP+PPGP 
Sbjct: 121 IIKQKGGRSRGFAFVTMASGEEAQAVIDKFHSQEVSGRAIRIEFAKRFKKPSPPRPPGPQ 180

Query: 181 PGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF--------- 240
           PGET +KLYVSNL WKVRSS+LREFFS NFNPVAARVVFD+PSG+SAGYGF         
Sbjct: 181 PGETRHKLYVSNLEWKVRSSHLREFFSTNFNPVAARVVFDAPSGKSAGYGFVSFATREEA 240

Query: 241 ----------ELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 265
                     ELMGRPLRLKFSE+N ++ E  KE+  + Q EES
Sbjct: 241 EEAISTLDGKELMGRPLRLKFSEKNTDKSENQKEE--QDQPEES 282

BLAST of ClCG10G001490 vs. NCBI nr
Match: gi|225427185|ref|XP_002279685.1| (PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Vitis vinifera])

HSP 1 Score: 300.8 bits (769), Expect = 2.3e-78
Identity = 165/290 (56.90%), Postives = 202/290 (69.66%), Query Frame = 1

Query: 1   MATLESAIPIISQYISSSSSSKLCFN-KLPSAIKLRISFSSPLLSLN-PTTPISPLSLNP 60
           MA LE+++ I S Y   SSSSKL F+ + P ++ L  S   P + L  P  P+  L  NP
Sbjct: 1   MAALEASLSIFSLY--RSSSSKLLFSHRPPPSMSLHSSAFIPSICLKYPLYPLPLLYTNP 60

Query: 61  SRNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDV 120
           +      LCS+VQE+ +E   EQ ++ NQK+KL++ NLPWS SVVDIK LFG+CGTVTDV
Sbjct: 61  TTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKK---PPPPKP 180
           EIIKQK+GRSRG+AFVTM S +EAQA + K+DS E+SGR+I+VEFAKR KK   PPPP P
Sbjct: 121 EIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGF----- 240
            GPP GET +KLYVSNLAWKVRS++LREFFS NFNPV+ RVVFDSPSGRS GYGF     
Sbjct: 181 AGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFAT 240

Query: 241 --------------ELMGRPLRLKFSERNVNEPETPKE--DVSESQSEES 265
                         ELMGRP+ LKFS + ++E    KE  D+SE Q EE+
Sbjct: 241 KEEAEAAISALDGKELMGRPVHLKFSVKTIDESGDEKEEGDISEGQPEEA 288

BLAST of ClCG10G001490 vs. NCBI nr
Match: gi|297742089|emb|CBI33876.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 283.9 bits (725), Expect = 2.9e-73
Identity = 146/242 (60.33%), Postives = 175/242 (72.31%), Query Frame = 1

Query: 47  PTTPISPLSLNPSRNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIK 106
           P  P+  L  NP+      LCS+VQE+ +E   EQ ++ NQK+KL++ NLPWS SVVDIK
Sbjct: 17  PLYPLPLLYTNPTTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIK 76

Query: 107 ELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKR 166
            LFG+CGTVTDVEIIKQK+GRSRG+AFVTM S +EAQA + K+DS E+SGR+I+VEFAKR
Sbjct: 77  NLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKR 136

Query: 167 LKK---PPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSG 226
            KK   PPPP P GPP GET +KLYVSNLAWKVRS++LREFFS NFNPV+ RVVFDSPSG
Sbjct: 137 FKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSG 196

Query: 227 RSAGYGF-------------------ELMGRPLRLKFSERNVNEPETPKE--DVSESQSE 265
           RS GYGF                   ELMGRP+ LKFS + ++E    KE  D+SE Q E
Sbjct: 197 RSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFSVKTIDESGDEKEEGDISEGQPE 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ROC5_NICSY2.3e-2534.6733 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
ROC3_NICSY1.8e-2231.2928 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
ROC4_NICSY1.8e-2231.6631 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
ROC1_NICSY4.0e-2232.3029 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
CP29B_ARATH2.6e-2131.87RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A0A0L1U2_CUCSA2.1e-12682.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009490 PE=4 SV=1[more]
A0A067K0D0_JATCU8.5e-7253.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19129 PE=4 SV=1[more]
A0A059CII5_EUCGR1.5e-7154.79Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02207 PE=4 SV=1[more]
W9QFE1_9ROSA1.2e-7054.0031 kDa ribonucleoprotein OS=Morus notabilis GN=L484_003209 PE=4 SV=1[more]
A9PK26_9ROSI6.1e-7056.87Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
Match NameE-valueIdentityDescription
AT2G35410.11.4e-6548.63 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G09040.12.6e-2731.60 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G60000.12.2e-2337.75 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37220.11.5e-2231.87 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G24770.13.2e-2232.59 31-kDa RNA binding protein[more]
Match NameE-valueIdentityDescription
gi|659095603|ref|XP_008448669.1|1.6e-12783.86PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo][more]
gi|778675028|ref|XP_011650340.1|3.0e-12682.64PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus][more]
gi|1009157668|ref|XP_015896880.1|2.0e-8259.86PREDICTED: RNA-binding protein CP33, chloroplastic [Ziziphus jujuba][more]
gi|225427185|ref|XP_002279685.1|2.3e-7856.90PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Vitis vinifera][more]
gi|297742089|emb|CBI33876.3|2.9e-7360.33unnamed protein product [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0018130 heterocycle biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901362 organic cyclic compound biosynthetic process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0010467 gene expression
biological_process GO:0015979 photosynthesis
biological_process GO:0044271 cellular nitrogen compound biosynthetic process
biological_process GO:0019438 aromatic compound biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044711 single-organism biosynthetic process
biological_process GO:0016070 RNA metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component GO:0005575 cellular_component
cellular_component GO:0044424 intracellular part
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009579 thylakoid
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0009507 chloroplast
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003729 mRNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G001490.1ClCG10G001490.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 187..230
score: 1.9E-6coord: 91..160
score: 2.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 186..240
score: 0.058coord: 90..162
score: 3.3
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 89..166
score: 18.939coord: 185..230
score: 9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 168..230
score: 1.7E-11coord: 77..167
score: 4.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 81..173
score: 9.27E-29coord: 170..247
score: 2.47
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 57..230
score: 3.7

The following gene(s) are paralogous to this gene:

None