ClCG10G000970 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G000970
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr10 : 1001618 .. 1002001 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

mRNA sequence

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Coding sequence (CDS)

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Protein sequence

MAEETCPVASRINLLKKLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYCHGECLPPPPPESPSI

Homology

[Close]

BLAST of ClCG10G000970 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MAEETCPVASRIN-LLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 60
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of ClCG10G000970 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-12
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MAEETCPVASRIN-LLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 60
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of ClCG10G000970 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 24  LRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQD 83
           LRLCLL R R  R  S    DD+KV  R   E Q RIA +S V +L+   S+S +G  ++
Sbjct: 16  LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER-ASSSRYGGYEE 75

Query: 84  DVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 76  DVDQRAEIFIENFRRQLRLERQISLQLRY 103

The following BLAST results are available for this feature:

BLAST of ClCG10G000970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	4.8e-12	48.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]

BLAST of ClCG10G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	6.8e-12	48.67	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	1.1e-09	50.56	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G000970.1	ClCG10G000970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 81..113 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G000970	Cla97C10G185570	Watermelon (97103) v2	wcgwmbB038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G000970	Silver-seed gourd	carwcgB0421
ClCG10G000970	Silver-seed gourd	carwcgB0655
ClCG10G000970	Cucumber (Chinese Long) v3	cucwcgB194
ClCG10G000970	Wax gourd	wcgwgoB131
ClCG10G000970	Cucumber (Gy14) v1	cgywcgB556
ClCG10G000970	Cucurbita maxima (Rimu)	cmawcgB284
ClCG10G000970	Cucurbita maxima (Rimu)	cmawcgB721
ClCG10G000970	Cucurbita moschata (Rifu)	cmowcgB276
ClCG10G000970	Cucurbita moschata (Rifu)	cmowcgB724
ClCG10G000970	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G000970	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G000970	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G000970	Watermelon (97103) v1	wcgwmB056
ClCG10G000970	Cucurbita pepo (Zucchini)	cpewcgB193
ClCG10G000970	Cucurbita pepo (Zucchini)	cpewcgB772
ClCG10G000970	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G000970	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G000970	Melon (DHL92) v3.6.1	medwcgB401