ClCG09G017420 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G017420
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr09 : 34177652 .. 34178077 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCATGAGACTGCGAAAGGCCTATGGGATGCCATTCAAGAGTTGTTTAGTGTTCAGTCTCGTGCTGAGGAAGACTATCTGAGACAGGTTTTTGAGTCTACCTGAAAAGGATATAAAAAAATGAGTGATTATCTCCATATTATGAAAACACATTCTGATAATCTGGAGCAAGCAGGCAGTCCGGTTTCTCAACGAGCTCTTGTCTCACAAGTCATTTTAGGGCTTGATGAGGAGTATAACCTGATTGTGGCCACGATTCAAAGCAGAATGGATGTTAAATGGACCGATCTTCAATCCAAATTGCTGATCTATGAAAAAACGCTTGAGCATCATAACATTAGCAAGACAACTTCATTTGGAGGATCCACCTTAGTGAACATGACTAGGAGTAAAAACTTCAACCCAAGTGGCCGACAGAAATAG

mRNA sequence

ATGGGTCATGAGACTGCGAAAGGCCTATGGGATGCCATTCAAGAGTTGTTTAGTGTTCAGTCTCGTGCTGAGGAAGACTATCTGAGACAGCAAGCAGGCAGTCCGGTTTCTCAACGAGCTCTTGTCTCACAAGTCATTTTAGGGCTTGATGAGGAGTATAACCTGATTGTGGCCACGATTCAAAGCAGAATGGATGTTAAATGGACCGATCTTCAATCCAAATTGCTGATCTATGAAAAAACGCTTGAGCATCATAACATTAGCAAGACAACTTCATTTGGAGGATCCACCTTAGTGAACATGACTAGGAGTAAAAACTTCAACCCAAGTGGCCGACAGAAATAG

Coding sequence (CDS)

ATGGGTCATGAGACTGCGAAAGGCCTATGGGATGCCATTCAAGAGTTGTTTAGTGTTCAGTCTCGTGCTGAGGAAGACTATCTGAGACAGCAAGCAGGCAGTCCGGTTTCTCAACGAGCTCTTGTCTCACAAGTCATTTTAGGGCTTGATGAGGAGTATAACCTGATTGTGGCCACGATTCAAAGCAGAATGGATGTTAAATGGACCGATCTTCAATCCAAATTGCTGATCTATGAAAAAACGCTTGAGCATCATAACATTAGCAAGACAACTTCATTTGGAGGATCCACCTTAGTGAACATGACTAGGAGTAAAAACTTCAACCCAAGTGGCCGACAGAAATAG

Protein sequence

MGHETAKGLWDAIQELFSVQSRAEEDYLRQQAGSPVSQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEHHNISKTTSFGGSTLVNMTRSKNFNPSGRQK

Homology

[Close]

BLAST of ClCG09G017420 vs. TrEMBL
Match: A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 1


Query: 1   MGHETAKGLWDAIQELFSVQSRAEEDYLRQ---------------------------QAG 60
           +G   AK +W+A  + F V+SRAEED+LRQ                           QA 
Sbjct: 35  IGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAE 94

Query: 61  SPVSQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEHHNISKTT-S 114
           SP+ +RAL+SQV+LGLDE YN ++  IQ + ++ W D+QSKLLI+EK L+H N  K   +
Sbjct: 95  SPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGN 154

[Close]

BLAST of ClCG09G017420 vs. TrEMBL
Match: A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 40/87 (45.98%), Postives = 46/87 (52.87%), Query Frame = 1


Query: 1  MGHETAKGLWDAIQELFSVQSRAEEDYLR---------------------------QQAG 60
          MG  TAK LW+AIQ+LF VQ RAEED+LR                            QAG
Sbjct: 10 MGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKTNVDNLDQAG 69

[Close]

BLAST of ClCG09G017420 vs. TrEMBL
Match: A0A151U7R7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008029 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 1


Query: 4   ETAKGLWDAIQELFSVQSRAE------------------EDYLRQQ---------AGSPV 63
           ET+K LW+  Q L    +R+                   E+YL +          AGSP+
Sbjct: 13  ETSKELWEGAQSLVGAHTRSRVTLLKTEFHSSRKGSMKMEEYLIKMKLLADSLKLAGSPI 72

Query: 64  SQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEHHN 87
           S   L++Q + GLD  YN I+  +  + D+ W D+Q++LL +E  LE  N
Sbjct: 73  SNTDLITQTLAGLDINYNAIIVQLSDKNDLTWIDMQAQLLTFENRLEQLN 122

[Close]

BLAST of ClCG09G017420 vs. NCBI nr
Match: gi|700210588|gb|KGN65684.1| (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 1


Query: 1   MGHETAKGLWDAIQELFSVQSRAEEDYLRQ---------------------------QAG 60
           +G   AK +W+A  + F V+SRAEED+LRQ                           QA 
Sbjct: 35  IGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKTNADNLGQAE 94

Query: 61  SPVSQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEHHNISKTT-S 114
           SP+ +RAL+SQV+LGLDE YN ++  IQ + ++ W D+QSKLLI+EK L+H N  K   +
Sbjct: 95  SPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQKNIGN 154

[Close]

BLAST of ClCG09G017420 vs. NCBI nr
Match: gi|700188770|gb|KGN44003.1| (hypothetical protein Csa_7G091720 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 9.2e-08
Identity = 40/87 (45.98%), Postives = 46/87 (52.87%), Query Frame = 1


Query: 1  MGHETAKGLWDAIQELFSVQSRAEEDYLR---------------------------QQAG 60
          MG  TAK LW+AIQ+LF VQ RAEED+LR                            QAG
Sbjct: 10 MGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKTNVDNLDQAG 69

[Close]

BLAST of ClCG09G017420 vs. NCBI nr
Match: gi|828335907|ref|XP_012575528.1| (PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 39/135 (28.89%), Postives = 59/135 (43.70%), Query Frame = 1


Query: 4   ETAKGLWDAIQELFSVQSRAEEDYLRQQ---------------------------AGSPV 63
           ET+K LWD  Q L    +R+   YL+ +                           AGSP+
Sbjct: 100 ETSKQLWDEAQSLAGAHTRSRVTYLKSEFHSIIKGEMKMEEYPIKMKNLADKLKLAGSPI 159

Query: 64  SQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEHHN-ISKTTSFGG 109
           S   L+ Q + GLD EYN +V  +  +  + W DLQ+K L ++  L+  N ++  T    
Sbjct: 160 SNSDLIIQTLNGLDSEYNPMVVKLSDQTSLTWVDLQAKFLTFDSRLDQLNSLTNLTLNAS 219

[Close]

BLAST of ClCG09G017420 vs. NCBI nr
Match: gi|828332633|ref|XP_004513130.2| (PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 37/136 (27.21%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 4   ETAKGLWDAIQELFSVQSRAEEDYLRQQ---------------------------AGSPV 63
           ET+K LW+  Q L    +++   YL+ +                           AGSP+
Sbjct: 104 ETSKELWNEAQSLTGAHTKSRTIYLKSEFHNTRKGQMKMDQYLLKMKNLSDKLKLAGSPI 163

Query: 64  SQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEH-HNISKTTSFGG 112
           S   L+ Q + GLD +YN +V  +  ++++ W DLQ++LL +E  +E  +N S  +    
Sbjct: 164 SSSDLIIQTLNGLDADYNPVVVKLSDQINLNWVDLQAQLLAFENRMEQLNNFSNLSMNAS 223

[Close]

BLAST of ClCG09G017420 vs. NCBI nr
Match: gi|828334685|ref|XP_012575223.1| (PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum])

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 41/135 (30.37%), Postives = 61/135 (45.19%), Query Frame = 1


Query: 4   ETAKGLWDAIQELFSVQSRAE------------------EDYLRQQ---------AGSPV 63
           ET+K LWD  Q L    +R+                   E+YL +          AGSP+
Sbjct: 100 ETSKQLWDEAQSLVGAHTRSRVTDLKSEFHNIRKGEMKMEEYLVKMKNLADKLKLAGSPI 159

Query: 64  SQRALVSQVILGLDEEYNLIVATIQSRMDVKWTDLQSKLLIYEKTLEHHN-ISKTTSFGG 109
           S   L+ Q + GLD EYN +V  +  +  + W DLQ++LL +E  L+  N ++  T    
Sbjct: 160 SNSDLIIQTLNGLDSEYNPMVVKLSDQTSLTWVDLQAQLLTFESRLDQLNSLTNLTLNAS 219

The following BLAST results are available for this feature:

BLAST of ClCG09G017420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB7_CUCSA	1.4e-18	39.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1	[more]
A0A0A0K3F9_CUCSA	6.4e-08	45.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1	[more]
A0A151U7R7_CAJCA	4.6e-06	30.91	Uncharacterized protein OS=Cajanus cajan GN=KK1_008029 PE=4 SV=1	[more]

BLAST of ClCG09G017420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210588\|gb\|KGN65684.1\|	2.0e-18	39.44	hypothetical protein Csa_1G496800 [Cucumis sativus]	[more]
gi\|700188770\|gb\|KGN44003.1\|	9.2e-08	45.98	hypothetical protein Csa_7G091720 [Cucumis sativus]	[more]
gi\|828335907\|ref\|XP_012575528.1\|	1.7e-06	28.89	PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum]	[more]
gi\|828332633\|ref\|XP_004513130.2\|	3.0e-06	27.21	PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum]	[more]
gi\|828334685\|ref\|XP_012575223.1\|	3.9e-06	30.37	PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G017420.1	ClCG09G017420.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G017420	Silver-seed gourd	carwcgB0769
ClCG09G017420	Silver-seed gourd	carwcgB1025
ClCG09G017420	Cucumber (Chinese Long) v3	cucwcgB105
ClCG09G017420	Watermelon (97103) v2	wcgwmbB035
ClCG09G017420	Wax gourd	wcgwgoB052
ClCG09G017420	Cucumber (Gy14) v1	cgywcgB093
ClCG09G017420	Cucurbita maxima (Rimu)	cmawcgB474
ClCG09G017420	Cucurbita maxima (Rimu)	cmawcgB510
ClCG09G017420	Cucurbita moschata (Rifu)	cmowcgB472
ClCG09G017420	Cucurbita moschata (Rifu)	cmowcgB507
ClCG09G017420	Wild cucumber (PI 183967)	cpiwcgB097
ClCG09G017420	Cucumber (Chinese Long) v2	cuwcgB091
ClCG09G017420	Melon (DHL92) v3.5.1	mewcgB076
ClCG09G017420	Watermelon (97103) v1	wcgwmB008
ClCG09G017420	Cucurbita pepo (Zucchini)	cpewcgB246
ClCG09G017420	Cucurbita pepo (Zucchini)	cpewcgB626
ClCG09G017420	Bottle gourd (USVL1VR-Ls)	lsiwcgB034
ClCG09G017420	Cucumber (Gy14) v2	cgybwcgB089
ClCG09G017420	Melon (DHL92) v3.6.1	medwcgB074