ClCG09G016440 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G016440
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Adhesive/proline-rich protein
Location	CG_Chr09 : 32344851 .. 32346148 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCTTCTTCTTCTTCTTCAATACAACTAGAATCTTTCCTTTCATAAAGTCCCATTCACACATCTCTCCTCTTTTTTCTTTTTCCAAAAACATTACCAAATAGTGATAAAAGGAAGAGAGAGGGATCCCACAAAACTAATTAATACACACAGAAAAAACAAACCTGAAAAATAACCATAGTTTCTTCAGCTAATTTCTCATTAAATACCCTGTTCTTCCTCTTCTTGTCTTCCCAATTAAGCTTTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGTTTTTTTTTTTTTTTTTTTGAGTTATGTTCAGGTTGACTTGTTTCTAATTAACTTTAGTTTGATTTAGTATTTTGGGTGCTGTGGAATTTATTTGCAGGAGGGTATTATCAAGGGCCGCCGGTGATGGCACCACCGCAATACGCTGCCCCGCCACCCAAAAGACAGCCGGGGTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTTTCTTTGTTGATAAACTCTGTGTGTTGAATGGTTTTGGTTTCATATATCAAAAGTGAAGGATGATGATTTGAAAAAATTAATATCTGTGTTGTTTTATCCATGTTAAAATACGATAGAAATTAATAGTTCATTATATATATATATATATATATATATATATAAAGAATAACGTGCGAGCATCGAGATGCTTCCAATAGACCATTCTACCGTTCGATTTGGCTTCTTCACGTTCTCCTTTCTCCAGCTTGAATCATATCTAAGTGACAAACATCCTTTCAAGTTTGAACTACACATTTGGTTTGCCTTTTCTGTTTGTTACTCTATGCCTAACAAAGGTTTTAAATTTGTGTTTGCATGCAGCCTTGCAGCTCTATGTTGTTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCAATTATCTTTGTTGCCTGATATCTGAGATATTGTTGCCTTTGTAGCTGTAATTACTTCTTTGTGAGTGGTTTGATTTTGTATAAACTTGGAAACAAGATTGATTGGTGTCTAGAATAAAGCTGTGTTTTCTTGTAAAGTACAGACTTTACTCATTTGATTTCATAGTAACTTTATTTGTCATTACCTAACCAATAAATTTAGTCAGTAAATTTTACCATGCGTGGTTATTTAGGTTTTAAACTTTGAATTCCCTTCTTCGAGAACTTTGGAAGCTAGTGAATGTCTTCTTTACTTCGATAGCGTGACGGTTCCTTGTCATGTCTCGAGGCTAAGGATATGTTGAGGATTCCACATTATAAAGATGAGA

mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCAATACAACTAGAATCTTTCCTTTCATAAAGTCCCATTCACACATCTCTCCTCTTTTTTCTTTTTCCAAAAACATTACCAAATAGTGATAAAAGGAAGAGAGAGGGATCCCACAAAACTAATTAATACACACAGAAAAAACAAACCTGAAAAATAACCATAGTTTCTTCAGCTAATTTCTCATTAAATACCCTGTTCTTCCTCTTCTTGTCTTCCCAATTAAGCTTTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGTATTATCAAGGGCCGCCGGTGATGGCACCACCGCAATACGCTGCCCCGCCACCCAAAAGACAGCCGGGGTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTTTCTTTGTTGATAAACTCTCCTTGCAGCTCTATGTTGTTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCAATTATCTTTGTTGCCTGATATCTGAGATATTGTTGCCTTTGTAGCTGTAATTACTTCTTTGTGAGTGGTTTGATTTTGTATAAACTTGGAAACAAGATTGATTGGTGTCTAGAATAAAGCTGTGTTTTCTTGTAAAGTACAGACTTTACTCATTTGATTTCATAGTAACTTTATTTGTCATTACCTAACCAATAAATTTAGTCAGTAAATTTTACCATGCGTGGTTATTTAGGTTTTAAACTTTGAATTCCCTTCTTCGAGAACTTTGGAAGCTAGTGAATGTCTTCTTTACTTCGATAGCGTGACGGTTCCTTGTCATGTCTCGAGGCTAAGGATATGTTGAGGATTCCACATTATAAAGATGAGA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGTATTATCAAGGGCCGCCGGTGATGGCACCACCGCAATACGCTGCCCCGCCACCCAAAAGACAGCCGGGGTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTTTCTTTGTTGATAAACTCTCCTTGCAGCTCTATGTTGTTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCAATTATCTTTGTTGCCTGATATCTGA

Protein sequence

MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLSLQLYVVAVSLMSVAVTLQLSLLPDI

Homology

[Close]

BLAST of ClCG09G016440 vs. TrEMBL
Match: A0A0A0K7L8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-21
Identity = 54/81 (66.67%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLSLQL 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQP                  +LQL
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP------------------ALQL 60

Query: 61 YVVAVSLMSVAVTLQLSLLPD 82
          Y  AVSLM+ AVTL LS L D
Sbjct: 61 YAAAVSLMNAAVTLPLSFLLD 63

[Close]

BLAST of ClCG09G016440 vs. TrEMBL
Match: A0A096QLU0_MAIZE (Uncharacterized protein OS=Zea mays GN=Zm.81438 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-14
Identity = 42/61 (68.85%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGY---YQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLS 59
          MSDPKYAYPYP  QG Y   YQGPPVMAPPQYAAPPP+R+P FLEGWY        D LS
Sbjct: 1  MSDPKYAYPYPA-QGYYQGPYQGPPVMAPPQYAAPPPRREPSFLEGWYVFPAGQLSDPLS 60

[Close]

BLAST of ClCG09G016440 vs. TrEMBL
Match: A0A0S3T2D4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G082700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-14
Identity = 39/52 (75.00%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQ-YAAPPPKRQPGFLEGWYAKKLVF 52
          MSDPKYAYPYP    GYYQGPPVMAPPQ YAAPPP+RQ GFLEGW     +F
Sbjct: 1  MSDPKYAYPYPAQGQGYYQGPPVMAPPQYYAAPPPRRQTGFLEGWLVPFTLF 52

[Close]

BLAST of ClCG09G016440 vs. TrEMBL
Match: B9SMJ5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230320 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-14
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPGFLEG  A
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLA 44

[Close]

BLAST of ClCG09G016440 vs. TrEMBL
Match: V7CN31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G143000g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.6e-14
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQ-YAAPPPKRQPGFLEGWYA 47
          MSDPKYAYPYPP   GYYQGPPVMAPPQ YAAPPP+RQ GFLEG  A
Sbjct: 1  MSDPKYAYPYPPQGQGYYQGPPVMAPPQYYAAPPPRRQAGFLEGCLA 47

[Close]

BLAST of ClCG09G016440 vs. TAIR10
Match: AT4G33660.1 (AT4G33660.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 33/56 (58.93%), Postives = 32/56 (57.14%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQG--PPVMAPPQY--------AAPPPKRQPGFLEGWYA 47
          MSDPKYAYPYP P G Y QG  PPV  PPQY          PPP R+ GFLEG  A
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLA 55

[Close]

BLAST of ClCG09G016440 vs. NCBI nr
Match: gi|700188578|gb|KGN43811.1| (hypothetical protein Csa_7G069130 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.9e-21
Identity = 54/81 (66.67%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLSLQL 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQP                  +LQL
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP------------------ALQL 60

Query: 61 YVVAVSLMSVAVTLQLSLLPD 82
          Y  AVSLM+ AVTL LS L D
Sbjct: 61 YAAAVSLMNAAVTLPLSFLLD 63

[Close]

BLAST of ClCG09G016440 vs. NCBI nr
Match: gi|965613766|dbj|BAT99398.1| (hypothetical protein VIGAN_10082700 [Vigna angularis var. angularis])

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-14
Identity = 39/52 (75.00%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQ-YAAPPPKRQPGFLEGWYAKKLVF 52
          MSDPKYAYPYP    GYYQGPPVMAPPQ YAAPPP+RQ GFLEGW     +F
Sbjct: 1  MSDPKYAYPYPAQGQGYYQGPPVMAPPQYYAAPPPRRQTGFLEGWLVPFTLF 52

[Close]

BLAST of ClCG09G016440 vs. NCBI nr
Match: gi|223533390|gb|EEF35140.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-14
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPGFLEG  A
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLA 44

[Close]

BLAST of ClCG09G016440 vs. NCBI nr
Match: gi|670368797|ref|XP_008665610.1| (PREDICTED: uncharacterized protein LOC100277083 [Zea mays])

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-14
Identity = 42/61 (68.85%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MSDPKYAYPYPPPQGGY---YQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLS 59
          MSDPKYAYPYP  QG Y   YQGPPVMAPPQYAAPPP+R+P FLEGWY        D LS
Sbjct: 1  MSDPKYAYPYPA-QGYYQGPYQGPPVMAPPQYAAPPPRREPSFLEGWYVFPAGQLSDPLS 60

[Close]

BLAST of ClCG09G016440 vs. NCBI nr
Match: gi|719995883|ref|XP_010254642.1| (PREDICTED: uncharacterized protein LOC104595564 [Nelumbo nucifera])

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
           MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEG  A
Sbjct: 92  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLA 135

The following BLAST results are available for this feature:

BLAST of ClCG09G016440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L8_CUCSA	6.2e-21	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069130 PE=4 SV=1	[more]
A0A096QLU0_MAIZE	2.5e-14	68.85	Uncharacterized protein OS=Zea mays GN=Zm.81438 PE=4 SV=1	[more]
A0A0S3T2D4_PHAAN	2.5e-14	75.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G082700 PE=...	[more]
B9SMJ5_RICCO	2.5e-14	84.78	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230320 PE=4 SV=1	[more]
V7CN31_PHAVU	5.6e-14	82.98	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G143000g PE=4 SV=1	[more]

BLAST of ClCG09G016440 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33660.1	2.2e-09	58.93	unknown protein	[more]

BLAST of ClCG09G016440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188578\|gb\|KGN43811.1\|	8.9e-21	66.67	hypothetical protein Csa_7G069130 [Cucumis sativus]	[more]
gi\|965613766\|dbj\|BAT99398.1\|	3.6e-14	75.00	hypothetical protein VIGAN_10082700 [Vigna angularis var. angularis]	[more]
gi\|223533390\|gb\|EEF35140.1\|	3.6e-14	84.78	conserved hypothetical protein [Ricinus communis]	[more]
gi\|670368797\|ref\|XP_008665610.1\|	3.6e-14	68.85	PREDICTED: uncharacterized protein LOC100277083 [Zea mays]	[more]
gi\|719995883\|ref\|XP_010254642.1\|	8.0e-14	82.61	PREDICTED: uncharacterized protein LOC104595564 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G016440.1	ClCG09G016440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..82 scor
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..43 score: 5.4
None	No IPR available	PANTHER	PTHR31568:SF15	SUBFAMILY NOT NAMED	coord: 1..43 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G016440	Cla012956	Watermelon (97103) v1	wcgwmB009
ClCG09G016440	Cla97C09G178170	Watermelon (97103) v2	wcgwmbB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G016440	Bottle gourd (USVL1VR-Ls)	lsiwcgB212
ClCG09G016440	Bottle gourd (USVL1VR-Ls)	lsiwcgB215
ClCG09G016440	Cucumber (Gy14) v2	cgybwcgB473
ClCG09G016440	Melon (DHL92) v3.6.1	medwcgB171
ClCG09G016440	Silver-seed gourd	carwcgB0278
ClCG09G016440	Silver-seed gourd	carwcgB0709
ClCG09G016440	Cucumber (Chinese Long) v3	cucwcgB535
ClCG09G016440	Watermelon (97103) v2	wcgwmbB007
ClCG09G016440	Wax gourd	wcgwgoB033
ClCG09G016440	Wax gourd	wcgwgoB046
ClCG09G016440	Watermelon (Charleston Gray)	wcgwcgB004
ClCG09G016440	Cucumber (Gy14) v1	cgywcgB391
ClCG09G016440	Cucurbita maxima (Rimu)	cmawcgB447
ClCG09G016440	Cucurbita moschata (Rifu)	cmowcgB071
ClCG09G016440	Cucurbita moschata (Rifu)	cmowcgB448
ClCG09G016440	Wild cucumber (PI 183967)	cpiwcgB541
ClCG09G016440	Cucumber (Chinese Long) v2	cuwcgB514
ClCG09G016440	Melon (DHL92) v3.5.1	mewcgB176
ClCG09G016440	Cucurbita pepo (Zucchini)	cpewcgB223
ClCG09G016440	Cucurbita pepo (Zucchini)	cpewcgB576